CcUC09G185800 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G185800
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr09: 37012689 .. 37013743 (-)
RNA-Seq Expression	CcUC09G185800
Synteny	CcUC09G185800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACCAATCCATGAATTCCACCTTCGACCTGTGCTGCCCCTGTACGGACCTGCCCACGTGCAATCCCAGCAAAATGAAAATGATTCTAAACAAATTCATGTTCATAACCAGCAAAGCACTAAAGGGGGAGCAACAGAACGCCATACCTCTAGCCTTAAAACCTTTGAGCATAAGAGGTCATGGGCAGATTTGATGGAGATAGCACCAAGATCTTGGAACCCTTGCTTGACTGCTTGCATGGTGTAAGGAATGAACTTCAGGACTGAACCCTTATCAGCAACTGCTCCAACAACCCCCTGAGCTATCTTAAGAGTTGCAGTATCCCCCAGGTACCTGGCATCACTGCCTTTCGTCATTGCTTCTAAAGAGCCCATCCCCCGATACTTCTTCACACGCTGACCATTCTGGAATGACAAGAACCAACTTCTTATCAGTCATTTCTGATTTCGCTAGTGAATCTCAGTTCTTATAACTTAAAAGGGGAAAAGCTTGTCTTGTGAGCAGTTGTACTTGTAACTCGTAAGAGAAATGTAGAACACCAGAAGATAAAGAACATAGACATGCGCATGGGCAAATTTGAAGTAAACTTCAGGGTGAAAGGGAAGAAAAAGAAAGAAGAGAAGTGGTTAAGTCAATATTAAGTACAAGCACGAATCATTCTACCACCTAAATGTACCCCAATGAAGTGCTTATCTACTATTGAATGGCTTAAAGACACAGTTTAAATTTTAAAACACCAATCATTTGATGTATATGGAGAGAAATCCCAAAAAAGCAGACATAGCAGTAATGATTCCAGTTTTATTTACGAAGTTGTTACTTGTAGTTGTTAAGTAACTAGCCATGACCATTCACTTGGGAAAATGACAATTTCCAGAAGAAATACCTTAGTTTCGAAGGCCCCAGGGGCCTCGGTGCTCCCAGCCAAGAAGCTTCCCATCATTACCGTGGACGCACCAAGAACTAAAGCCTTGACAATATGCCCAGAGTTTGAAATTCCACCATCAGCGATGATAGGCACGCCACTTTGTGAAGCAACTAATGCGACCTTGTAA

mRNA sequence

ACACCAATCCATGAATTCCACCTTCGACCTGTGCTGCCCCTGTACGGACCTGCCCACGTGCAATCCCAGCAAAATGAAAATGATTCTAAACAAATTCATGTTCATAACCAGCAAAGCACTAAAGGGGGAGCAACAGAACGCCATACCTCTAGCCTTAAAACCTTTGAGCATAAGAGGTCATGGGCAGATTTGATGGAGATAGCACCAAGATCTTGGAACCCTTGCTTGACTGCTTGCATGTATCCCCCAGGTACCTGGCATCACTGCCTTTCGTCATTGCTTCTAAAGAGCCCATCCCCCGATACTTCTTCACACGCTGACCATTCTGGAATGACAAGAACCAACTTCTTATCAGTCATTTCTGATTTCGCTATAACTAGCCATGACCATTCACTTGGGAAAATGACAATTTCCAGAAGAAATACCTTAGTTTCGAAGGCCCCAGGGGCCTCGGTGCTCCCAGCCAAGAAGCTTCCCATCATTACCGTGGACGCACCAAGAACTAAAGCCTTGACAATATGCCCAGAGTTTGAAATTCCACCATCAGCGATGATAGGCACGCCACTTTGTGAAGCAACTAATGCGACCTTGTAA

Coding sequence (CDS)

ACACCAATCCATGAATTCCACCTTCGACCTGTGCTGCCCCTGTACGGACCTGCCCACGTGCAATCCCAGCAAAATGAAAATGATTCTAAACAAATTCATGTTCATAACCAGCAAAGCACTAAAGGGGGAGCAACAGAACGCCATACCTCTAGCCTTAAAACCTTTGAGCATAAGAGGTCATGGGCAGATTTGATGGAGATAGCACCAAGATCTTGGAACCCTTGCTTGACTGCTTGCATGTATCCCCCAGGTACCTGGCATCACTGCCTTTCGTCATTGCTTCTAAAGAGCCCATCCCCCGATACTTCTTCACACGCTGACCATTCTGGAATGACAAGAACCAACTTCTTATCAGTCATTTCTGATTTCGCTATAACTAGCCATGACCATTCACTTGGGAAAATGACAATTTCCAGAAGAAATACCTTAGTTTCGAAGGCCCCAGGGGCCTCGGTGCTCCCAGCCAAGAAGCTTCCCATCATTACCGTGGACGCACCAAGAACTAAAGCCTTGACAATATGCCCAGAGTTTGAAATTCCACCATCAGCGATGATAGGCACGCCACTTTGTGAAGCAACTAATGCGACCTTGTAA

Protein sequence

TPIHEFHLRPVLPLYGPAHVQSQQNENDSKQIHVHNQQSTKGGATERHTSSLKTFEHKRSWADLMEIAPRSWNPCLTACMYPPGTWHHCLSSLLLKSPSPDTSSHADHSGMTRTNFLSVISDFAITSHDHSLGKMTISRRNTLVSKAPGASVLPAKKLPIITVDAPRTKALTICPEFEIPPSAMIGTPLCEATNATL

Homology

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BLAST of CcUC09G185800 vs. NCBI nr
Match: KAG9135493.1 (hypothetical protein Leryth_007242 [Lithospermum erythrorhizon])

HSP 1 Score: 55.5 bits (132), Expect = 6.2e-04
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 137 ISRRNTLVSKAPGASVLPAKKLPIITVDAPRTKALTICPEFEIPPS 183
           I  +  +VS+   AS+LPA+KLPIITV+APRT+ALT+ PEF+IPP+
Sbjct: 5   IMEKTKIVSR---ASLLPARKLPIITVEAPRTRALTMWPEFDIPPT 47

The following BLAST results are available for this feature:

BLAST of CcUC09G185800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG9135493.1	6.2e-04	60.87	hypothetical protein Leryth_007242 [Lithospermum erythrorhizon]	[more]

BLAST of CcUC09G185800 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC09G185800 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC09G185800 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G185800.1	CcUC09G185800.1	mRNA