CcUC09G184660 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G184660
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionGPI-anchored protein LLG1
LocationCicolChr09: 35935710 .. 35936178 (+)
RNA-Seq ExpressionCcUC09G184660
SyntenyCcUC09G184660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAATACAAAATACAAAAAATACAAAACATATTCTAAGGCGAAATTCAATTCAACAGCCTGTCTCTCGCCTTCTCGTCGGAGAAGAAGAAATTCTCTCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCGCCGGAATTATGCTCTCCGATCGATCCTTCTGCAACTACTTCACGATGCTTCTTCTCTTCATCCTCTCACTGCTTTTCGCTTCTTCTTCCTCCACTTCCATTTCAGGTACTTTTGATTCACAATCACCGCCACATTCTCAAATTTACCTCTCTTTCTTCTTCTCATTCTCCTCCTCCTCCTTCTCTATTTCTGTATGTAACTTCACTTTTTATGTTTTCCAGGTGATGTCTTTGAATCGAAGCTTTCAATCGGTCGGAACCTCCTACAGGCTAAAAAAGGTTCCACCCTTTCTCTTCAACATCTTCAGTTTGTTTTTGCTGAGTTCGTAATCTAG

mRNA sequence

AAAAAAAAAATACAAAATACAAAAAATACAAAACATATTCTAAGGCGAAATTCAATTCAACAGCCTGTCTCTCGCCTTCTCGTCGGAGAAGAAGAAATTCTCTCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCGCCGGAATTATGCTCTCCGATCGATCCTTCTGCAACTACTTCACGATGCTTCTTCTCTTCATCCTCTCACTGCTTTTCGCTTCTTCTTCCTCCACTTCCATTTCAGGTGATGTCTTTGAATCGAAGCTTTCAATCGGTCGGAACCTCCTACAGGCTAAAAAAGGTTCCACCCTTTCTCTTCAACATCTTCAGTTTGTTTTTGCTGAGTTCGTAATCTAG

Coding sequence (CDS)

ATGCTCTCCGATCGATCCTTCTGCAACTACTTCACGATGCTTCTTCTCTTCATCCTCTCACTGCTTTTCGCTTCTTCTTCCTCCACTTCCATTTCAGGTGATGTCTTTGAATCGAAGCTTTCAATCGGTCGGAACCTCCTACAGGCTAAAAAAGGTTCCACCCTTTCTCTTCAACATCTTCAGTTTGTTTTTGCTGAGTTCGTAATCTAG

Protein sequence

MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHLQFVFAEFVI
Homology
BLAST of CcUC09G184660 vs. NCBI nr
Match: XP_038896951.1 (GPI-anchored protein LLG1-like [Benincasa hispida])

HSP 1 Score: 83.2 bits (204), Expect = 9.7e-13
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          MLSDRSFCN FTMLLL  LSLLF SSSSTSISGDVFESK+SIGRNLLQAKK   ++ + L
Sbjct: 1  MLSDRSFCN-FTMLLLLFLSLLFTSSSSTSISGDVFESKVSIGRNLLQAKKACPVNFEFL 60

Query: 61 QF 63
           +
Sbjct: 61 NY 61

BLAST of CcUC09G184660 vs. NCBI nr
Match: XP_022936417.1 (GPI-anchored protein LLG1 [Cucurbita moschata])

HSP 1 Score: 76.6 bits (187), Expect = 9.1e-11
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          M+SDRSFCN F+MLLLF LSLLF++SSSTSISGDVFESK+ IGR+LLQA+K   ++ + L
Sbjct: 1  MVSDRSFCN-FSMLLLFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFL 60

Query: 61 QF 63
           +
Sbjct: 61 NY 61

BLAST of CcUC09G184660 vs. NCBI nr
Match: KAG6592129.1 (GPI-anchored protein LLG1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.6 bits (187), Expect = 9.1e-11
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          M+SDRSFCN F+MLLLF LSLLF++SSSTSISGDVFESK+ IGR+LLQA+K   ++ + L
Sbjct: 1  MVSDRSFCN-FSMLLLFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFL 60

Query: 61 QF 63
           +
Sbjct: 61 NY 61

BLAST of CcUC09G184660 vs. NCBI nr
Match: KAG7025004.1 (GPI-anchored protein LLG1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.6 bits (187), Expect = 9.1e-11
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          M+SDRSFCN F+MLLLF LSLLF++SSSTSISGDVFESK+ IGR+LLQA+K   ++ + L
Sbjct: 1  MVSDRSFCN-FSMLLLFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFL 60

Query: 61 QF 63
           +
Sbjct: 61 NY 61

BLAST of CcUC09G184660 vs. NCBI nr
Match: XP_023536509.1 (GPI-anchored protein LLG1-like [Cucurbita pepo subsp. pepo] >XP_023536510.1 GPI-anchored protein LLG1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-10
Identity = 41/62 (66.13%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1   MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
           M+SDRSFCN F+ML+LF LSLLF++SSSTSISGDVFESK+ IGR+LLQA+K   ++ + L
Sbjct: 52  MVSDRSFCN-FSMLILFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFL 111

Query: 61  QF 63
            +
Sbjct: 112 NY 112

BLAST of CcUC09G184660 vs. ExPASy TrEMBL
Match: A0A6J1F8E1 (GPI-anchored protein LLG1 OS=Cucurbita moschata OX=3662 GN=LOC111443044 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.4e-11
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          M+SDRSFCN F+MLLLF LSLLF++SSSTSISGDVFESK+ IGR+LLQA+K   ++ + L
Sbjct: 1  MVSDRSFCN-FSMLLLFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFL 60

Query: 61 QF 63
           +
Sbjct: 61 NY 61

BLAST of CcUC09G184660 vs. ExPASy TrEMBL
Match: A0A6J1IFC4 (GPI-anchored protein LLG1-like OS=Cucurbita maxima OX=3661 GN=LOC111476731 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 40/62 (64.52%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          M+S+RSFCN F+MLLLF +SLLF++SSSTSISGDVFESK+ IGR+LLQA+K   ++ + L
Sbjct: 1  MVSNRSFCN-FSMLLLFFISLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFL 60

Query: 61 QF 63
           +
Sbjct: 61 NY 61

BLAST of CcUC09G184660 vs. ExPASy TrEMBL
Match: A0A6J1J2M4 (GPI-anchored protein LLG1-like OS=Cucurbita maxima OX=3661 GN=LOC111480694 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 2  LSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHLQ 61
          +SDRSFCN F+MLLLF +SLLF +SSSTSIS DVFESK SIGR LLQAKK   ++ + L 
Sbjct: 3  VSDRSFCN-FSMLLLFFISLLFTASSSTSISADVFESKASIGRGLLQAKKPCPVNFEFLN 62

Query: 62 F 63
          +
Sbjct: 63 Y 62

BLAST of CcUC09G184660 vs. ExPASy TrEMBL
Match: A0A6J1FTS4 (GPI-anchored protein LLG1-like OS=Cucurbita moschata OX=3662 GN=LOC111446763 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.4e-10
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 2  LSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHLQ 61
          +SDRSFCN F+MLLLF +SLLF +SSSTSIS DVFESK SIGR LLQAKK   ++ + L 
Sbjct: 3  VSDRSFCN-FSMLLLFFISLLFTASSSTSISVDVFESKASIGRGLLQAKKACPVNFEFLD 62

Query: 62 F 63
          +
Sbjct: 63 Y 62

BLAST of CcUC09G184660 vs. ExPASy TrEMBL
Match: A0A6J1CGJ1 (GPI-anchored protein LLG1-like OS=Momordica charantia OX=3673 GN=LOC111010609 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          M+SDR FCN F++LLLF LSLLF+ SS TSISGDVFES++SIGR+LLQAKK   ++ + L
Sbjct: 1  MVSDRYFCN-FSLLLLFFLSLLFSPSSFTSISGDVFESQVSIGRSLLQAKKACPVNFEFL 60

Query: 61 QF 63
           +
Sbjct: 61 NY 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038896951.19.7e-1375.81GPI-anchored protein LLG1-like [Benincasa hispida][more]
XP_022936417.19.1e-1167.74GPI-anchored protein LLG1 [Cucurbita moschata][more]
KAG6592129.19.1e-1167.74GPI-anchored protein LLG1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7025004.19.1e-1167.74GPI-anchored protein LLG1 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023536509.11.6e-1066.13GPI-anchored protein LLG1-like [Cucurbita pepo subsp. pepo] >XP_023536510.1 GPI-... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F8E14.4e-1167.74GPI-anchored protein LLG1 OS=Cucurbita moschata OX=3662 GN=LOC111443044 PE=4 SV=... [more]
A0A6J1IFC42.9e-1064.52GPI-anchored protein LLG1-like OS=Cucurbita maxima OX=3661 GN=LOC111476731 PE=4 ... [more]
A0A6J1J2M44.9e-1067.21GPI-anchored protein LLG1-like OS=Cucurbita maxima OX=3661 GN=LOC111480694 PE=4 ... [more]
A0A6J1FTS46.4e-1067.21GPI-anchored protein LLG1-like OS=Cucurbita moschata OX=3662 GN=LOC111446763 PE=... [more]
A0A6J1CGJ11.1e-0964.52GPI-anchored protein LLG1-like OS=Momordica charantia OX=3673 GN=LOC111010609 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G184660.1CcUC09G184660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane