CcUC09G183280 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G183280
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr09: 34638995 .. 34639288 (-)
RNA-Seq ExpressionCcUC09G183280
SyntenyCcUC09G183280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTTCTCTTCAACAAGTTTCCGACGGTGGCGGCGGCGCTGCTGGTTGGTTTAATTCTTTGCTCCATTCCGATGAATGCGGTCGCCGTCGGCGAGCAACTCGTCAACGCCGCTAACCCAAACGTAATCGCGTCGGCGGCGGCGGAGTATCGAGAGTTCGATATCGGAAAGCCGCTTTATAGGATTAAAGAACGACAGCCCGATGTTCCGGACCTCATGGTTGAGACTATCAATACGATCTCCGCTGCACCTGGATCCGCCCCGACGCCGTCTCCGACGCCATCGGGCTAA

mRNA sequence

ATGGCGCTTCTCTTCAACAAGTTTCCGACGGTGGCGGCGGCGCTGCTGGTTGGTTTAATTCTTTGCTCCATTCCGATGAATGCGGTCGCCGTCGGCGAGCAACTCGTCAACGCCGCTAACCCAAACGTAATCGCGTCGGCGGCGGCGGAGTATCGAGAGTTCGATATCGGAAAGCCGCTTTATAGGATTAAAGAACGACAGCCCGATGTTCCGGACCTCATGGTTGAGACTATCAATACGATCTCCGCTGCACCTGGATCCGCCCCGACGCCGTCTCCGACGCCATCGGGCTAA

Coding sequence (CDS)

ATGGCGCTTCTCTTCAACAAGTTTCCGACGGTGGCGGCGGCGCTGCTGGTTGGTTTAATTCTTTGCTCCATTCCGATGAATGCGGTCGCCGTCGGCGAGCAACTCGTCAACGCCGCTAACCCAAACGTAATCGCGTCGGCGGCGGCGGAGTATCGAGAGTTCGATATCGGAAAGCCGCTTTATAGGATTAAAGAACGACAGCCCGATGTTCCGGACCTCATGGTTGAGACTATCAATACGATCTCCGCTGCACCTGGATCCGCCCCGACGCCGTCTCCGACGCCATCGGGCTAA

Protein sequence

MALLFNKFPTVAAALLVGLILCSIPMNAVAVGEQLVNAANPNVIASAAAEYREFDIGKPLYRIKERQPDVPDLMVETINTISAAPGSAPTPSPTPSG
Homology
BLAST of CcUC09G183280 vs. NCBI nr
Match: TYK05738.1 (hypothetical protein E5676_scaffold98G002250 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 63/97 (64.95%), Postives = 78/97 (80.41%), Query Frame = 0

Query: 1  MALLFNKFPTVAAALLVGLILCSIPMNAVAV-GEQLVNAANPNVIASAAAEYREFDIGKP 60
          MA+ FNKF T+AAALL+ LILCSI    VA   EQL+N AN NVI ++AAEY+ FDIGKP
Sbjct: 1  MAIHFNKFSTIAAALLIHLILCSILSTTVAASNEQLLNVANTNVITASAAEYQAFDIGKP 60

Query: 61 LYRIKERQPDVPDLMVETINTISAAPGSAPTPSPTPS 97
          LYR+KE Q  VPDL+VE +++IS+AP SAP+PSP+PS
Sbjct: 61 LYRVKE-QYHVPDLVVENLDSISSAPKSAPSPSPSPS 96

BLAST of CcUC09G183280 vs. NCBI nr
Match: KAG6578739.1 (hypothetical protein SDJN03_23187, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 8.9e-04
Identity = 48/119 (40.34%), Postives = 63/119 (52.94%), Query Frame = 0

Query: 1   MALLFNKFP---TVAAALLVGLILCSIPMNAVAVGEQLVNAANPNVIASAAAEYREFDIG 60
           MA+LFNK P   TVA+ALLVG+ILCSIP  A+A G       N N + S+  + + + +G
Sbjct: 1   MAVLFNKSPSRATVASALLVGIILCSIPTIAMAAG------GNLNGMDSSGND-KVYSVG 60

Query: 61  KPLYRIKER------------------QPDVPDLMVETINTISAAPGSAPTP--SPTPS 97
            PLYR+KE                   +P VP +   T    S  P SAP+P  SP+PS
Sbjct: 61  MPLYRVKESSGDDKVFFVGMPHYKTEDEPSVP-ISDNTFEPSSITPASAPSPLQSPSPS 111

BLAST of CcUC09G183280 vs. ExPASy TrEMBL
Match: A0A5D3C3F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002250 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.6e-21
Identity = 63/97 (64.95%), Postives = 78/97 (80.41%), Query Frame = 0

Query: 1  MALLFNKFPTVAAALLVGLILCSIPMNAVAV-GEQLVNAANPNVIASAAAEYREFDIGKP 60
          MA+ FNKF T+AAALL+ LILCSI    VA   EQL+N AN NVI ++AAEY+ FDIGKP
Sbjct: 1  MAIHFNKFSTIAAALLIHLILCSILSTTVAASNEQLLNVANTNVITASAAEYQAFDIGKP 60

Query: 61 LYRIKERQPDVPDLMVETINTISAAPGSAPTPSPTPS 97
          LYR+KE Q  VPDL+VE +++IS+AP SAP+PSP+PS
Sbjct: 61 LYRVKE-QYHVPDLVVENLDSISSAPKSAPSPSPSPS 96

BLAST of CcUC09G183280 vs. ExPASy TrEMBL
Match: A0A0A0KNL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G497040 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = 0

Query: 1  MALLFNKFPTVAAALLVGLILCSI-PMNAVAVGEQLVNAAN-PNVIASAAAEYREFDIGK 60
          MA+LFNKF T+ AALL+  ILCSI      A  EQL+N AN  N I ++AAEY+ FDIGK
Sbjct: 1  MAILFNKFSTIPAALLIHFILCSIFSTMFAATNEQLLNVANAKNGITASAAEYQAFDIGK 60

Query: 61 PLYRIKERQPDVPDLMVETINTISAAPGSAPTPSPTPS 97
          PLYRIKE Q  VPDL+VE I++IS+AP SAP+PSP+PS
Sbjct: 61 PLYRIKE-QYHVPDLVVENIDSISSAPSSAPSPSPSPS 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK05738.11.4e-2064.95hypothetical protein E5676_scaffold98G002250 [Cucumis melo var. makuwa][more]
KAG6578739.18.9e-0440.34hypothetical protein SDJN03_23187, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C3F26.6e-2164.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KNL82.4e-1863.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G497040 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G183280.1CcUC09G183280.1mRNA