CcUC09G183100 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G183100
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	photosynthetic NDH subunit of lumenal location 1, chloroplastic
Location	CicolChr09: 34476037 .. 34478187 (+)
RNA-Seq Expression	CcUC09G183100
Synteny	CcUC09G183100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTTTCAACCTCTTGCTTGAGTTGGGTTCCCACCACCGCCTCCAATTGGAAGGTTAGTGTATTCATTTACATTTACCAATCTTGCAGGACCCAGTTCTTGCTTCTCATTGTGCTTTAATTCCAGCTGAGGTTGCTTCCTTTCAATGAGCCATCAACAGCTACTTGTTCATTTTCTTCCTGTAGTACCATCAATTGCTCAACTGAGAGAACTTCCCGTGAGGAAGGTAAGATTTTCAATCTTAAATCTTAAGTTTAATGCTTAATTCCAATGCTTAGAGATTTGCAGCTTCAGAACGATTGCCATGTTGATTTTAGAAGAATGTGGGATTTCCTTTTGGTTTCGTTACTTGTGGGATGGAAATGCTTATTTGGTACTTATTTGGATTGCTTATTCTTGGAATCTATTAAAATTTAGAGGTCCGTGCGGAAGTATTTGAACTTTGTAGCTTGCATACAAGGTGTTTGTAGAATTGTGTAAACTAAAATTGCTTAGAAGAAATGGGTTCAAATCATTGTGGTAACCTTTCTAGGGATTGAAGTGTTAACGAGGTTACTTGGCAACCAAATGTAGTACATTTAGGTAGTTGTCATGTGAGAAACGAAAACAATGACTTCACTTACTATGGTTTTTATAGTGGGATTGTTCATCTCATGAGGATTTTGATTAGTTCTATTTGGAACCTTTTTCTTTTCCTTCCTTATAGGTGTTTCATTCGATGTTTTCTTGAGCCTGGATATCCTTATTGACCATGGTAATATGATGTTGATATATTAACATTTAGGCCATTGCAATAGAAGGCCGCTTCTGTTGGGAGTTGGAGCTCTAGCTACAAGTTTACTCACCGCAAGTCCCCTCTTTGCTGAAGGTATAAAATTTCCACTTCTCTTTAATAATCTAATATTGAATTTTAAATGAATACTTTGATTTTTATGTGCAGAAATCCCGAAAAATTATCGAGCATTCGTAGACTCTACAGATGGGTATTCCTATTACTACCCCTCTGATTGGAGGGTGAGAAAATTTCAACTAGCAGAAACATGAGATGATGCATGTCTAATAAACAAAAGAATATACTAAAACCAACAGTTTCTAAATGTTTCCTGTCTAGGAATTTGATTTTAGAGCCCATGATTCCGCATTCAAGGATCGATACCTGCAACTACAGAATGTTAGAGTGAAGTTCATACCAACGGAGAAAAAGGATATCCATGAAGAAGGTCCATTAGATGAGGTAAAGGAATCTTCAATTTAGATCATATTTGATATTCTGAGGCAAGAAGTCTGAATAGTTTAACTTTGATTAGAACAGGTTGTCAACTTTTTGGTAAAACATCGATATGCTGCACCAAATCAAAAGGCTACCATATATGACATGAAGGAGGTTTGCATTTTTCTCTGCCTCTCAGATCAATTTTTCTGTATAATATTATCTTGAAGTTTGTTTCTGGGACATTTAGTAGGTCTTTAATTTACCTGTTTCAGCGAACGATTGATGGGAGAAATTATTACACCTTTGAGTATAAACTTAGTTCTAGAGCATTCTCCCGCACCTCCTTTGCAACCATAGCCATTGCAAACGGTAAGCACATATTTTATTAGAATTTTGGGCCCTTCCATTTTTTTATTGATCAGCTCTGAATCCCATGCTTTTTAAACCATAGGATACTTCTTTACCTGAAAAAAGTAATAGAGAATATCAAATTAAACTATCCTGTTTAGAAAGAGAGATATCTAACAGAATCGAAGTTAACCAAACTCGTTTTATCCATTTGCATTCTGCATTCTTAACCTAACTCATATCTAACCAATACTTTTAGTTTTTGAATTGAATACAATCTGATTCGCATTAAAGTTCAAGCTGATGAGTTAAAGTTCCTGAATACAATCTGGTAACTTGCAAGTATTTTTTTAGTATACGGTAGAATATGAAGATTTGAATCAACGACCTCAAGGAGAGAAGTACATATCAATTACCGCTAATCTATACTGATATTAGTCGGTAACTTAACAAGGGTTGAAACAGCCATTTCTTCATATGCAGGTAGGTACTATACTTTGGTAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTATCGCGACATGCTTAAAGTGGTTGCTGATTCATTCAGGGTGTTGGATATATGA

mRNA sequence

ATGGCAGTTTCAACCTCTTGCTTGAGTTGGGTTCCCACCACCGCCTCCAATTGGAAGCTGAGGTTGCTTCCTTTCAATGAGCCATCAACAGCTACTTGTTCATTTTCTTCCTGTAGTACCATCAATTGCTCAACTGAGAGAACTTCCCGTGAGGAAGGCCATTGCAATAGAAGGCCGCTTCTGTTGGGAGTTGGAGCTCTAGCTACAAGTTTACTCACCGCAAGTCCCCTCTTTGCTGAAGAAATCCCGAAAAATTATCGAGCATTCGTAGACTCTACAGATGGGTATTCCTATTACTACCCCTCTGATTGGAGGGAATTTGATTTTAGAGCCCATGATTCCGCATTCAAGGATCGATACCTGCAACTACAGAATGTTAGAGTGAAGTTCATACCAACGGAGAAAAAGGATATCCATGAAGAAGGTCCATTAGATGAGGTTGTCAACTTTTTGGTAAAACATCGATATGCTGCACCAAATCAAAAGGCTACCATATATGACATGAAGGAGCGAACGATTGATGGGAGAAATTATTACACCTTTGAGTATAAACTTAGTTCTAGAGCATTCTCCCGCACCTCCTTTGCAACCATAGCCATTGCAAACGGTAGGTACTATACTTTGGTAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTATCGCGACATGCTTAAAGTGGTTGCTGATTCATTCAGGGTGTTGGATATATGA

Coding sequence (CDS)

ATGGCAGTTTCAACCTCTTGCTTGAGTTGGGTTCCCACCACCGCCTCCAATTGGAAGCTGAGGTTGCTTCCTTTCAATGAGCCATCAACAGCTACTTGTTCATTTTCTTCCTGTAGTACCATCAATTGCTCAACTGAGAGAACTTCCCGTGAGGAAGGCCATTGCAATAGAAGGCCGCTTCTGTTGGGAGTTGGAGCTCTAGCTACAAGTTTACTCACCGCAAGTCCCCTCTTTGCTGAAGAAATCCCGAAAAATTATCGAGCATTCGTAGACTCTACAGATGGGTATTCCTATTACTACCCCTCTGATTGGAGGGAATTTGATTTTAGAGCCCATGATTCCGCATTCAAGGATCGATACCTGCAACTACAGAATGTTAGAGTGAAGTTCATACCAACGGAGAAAAAGGATATCCATGAAGAAGGTCCATTAGATGAGGTTGTCAACTTTTTGGTAAAACATCGATATGCTGCACCAAATCAAAAGGCTACCATATATGACATGAAGGAGCGAACGATTGATGGGAGAAATTATTACACCTTTGAGTATAAACTTAGTTCTAGAGCATTCTCCCGCACCTCCTTTGCAACCATAGCCATTGCAAACGGTAGGTACTATACTTTGGTAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTATCGCGACATGCTTAAAGTGGTTGCTGATTCATTCAGGGTGTTGGATATATGA

Protein sequence

MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPLLLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYTFEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI

Homology

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BLAST of CcUC09G183100 vs. NCBI nr
Match: XP_038889544.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 469.5 bits (1207), Expect = 1.7e-128
Identity = 230/236 (97.46%), Postives = 232/236 (98.31%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPL 60
           MAVSTSC SWVPTTASNWKLRLLPFNEPSTAT SFSSCSTINCSTE+TSREEGHCNRRPL
Sbjct: 1   MAVSTSCFSWVPTTASNWKLRLLPFNEPSTATSSFSSCSTINCSTEKTSREEGHCNRRPL 60

Query: 61  LLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLL ASPLFAEE+PKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLLAASPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180
           LQLQNVRVKFIPTEKKDIHEEG LDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CcUC09G183100 vs. NCBI nr
Match: XP_038889545.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 463.0 bits (1190), Expect = 1.5e-126
Identity = 229/236 (97.03%), Postives = 231/236 (97.88%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPL 60
           MAVSTSC SWVPTTASNWKLRLLPFNEPSTAT SFSSCSTINCSTE+TSREEGHCNRRPL
Sbjct: 1   MAVSTSCFSWVPTTASNWKLRLLPFNEPSTATSSFSSCSTINCSTEKTSREEGHCNRRPL 60

Query: 61  LLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLL ASPLFA E+PKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLLAASPLFA-EVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180
           LQLQNVRVKFIPTEKKDIHEEG LDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 235

[Close]

BLAST of CcUC09G183100 vs. NCBI nr
Match: XP_022953447.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucurbita moschata] >KAG6602355.1 Photosynthetic NDH subunit of lumenal location 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033035.1 Photosynthetic NDH subunit of lumenal location 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 454.5 bits (1168), Expect = 5.5e-124
Identity = 220/236 (93.22%), Postives = 228/236 (96.61%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPL 60
           MAVSTSCLSWVPT+ASNWK RLLPFNEPSTATCS+SSC+TI CSTERTSR E HCNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTIICSTERTSRVESHCNRRPL 60

Query: 61  LLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALA SL  ASPLFAEE+PKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALAASLFAASPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180
           LQLQNVRVKFIPTEKKDIHEEG LDEVVNFLVKHRYAAPNQKATIYDMKERTIDG+NYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRA+SRTSFATIA+ANGRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CcUC09G183100 vs. NCBI nr
Match: XP_023534746.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 451.8 bits (1161), Expect = 3.6e-123
Identity = 218/236 (92.37%), Postives = 228/236 (96.61%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPL 60
           MAVSTSCLSWVPT+ASNWK RLLPFNEPSTATCS+SSC+T+ CSTERTSR E  CNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60

Query: 61  LLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSL  A+PLFAEE+PKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLFAATPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180
           LQLQNVRVKFIPTEKKDIHEEG LDEVVNFLVKHRYAAPNQKATIYDMKERTIDG+NYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRA+SRTSFATIA+ANGRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CcUC09G183100 vs. NCBI nr
Match: XP_022990449.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 451.1 bits (1159), Expect = 6.1e-123
Identity = 218/236 (92.37%), Postives = 227/236 (96.19%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPL 60
           MAVSTSCLSWVPT+ASNWK RLLPFNEPSTATCS+SSC+T+ CSTERTSR E  CNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60

Query: 61  LLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSL  A PLFAEE+PKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180
           LQLQNVRVKFIPTEKKDIHEEG LDEVVNFLVKHRYAAPNQKATIYDMKERTIDG+NYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRA+SRTSFATIA+ANGRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CcUC09G183100 vs. ExPASy Swiss-Prot
Match: O80634 (Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL1 PE=1 SV=2)

HSP 1 Score: 268.9 bits (686), Expect = 5.6e-71
Identity = 138/236 (58.47%), Postives = 169/236 (71.61%), Query Frame = 0


Query: 2   AVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEG-HCNRRPL 61
           ++S  C  + PT +   K  +L  N    A C  SS    + S     +  G +  RR  
Sbjct: 5   SLSIRCGGFSPTISH--KTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRRQA 64

Query: 62  LLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 121
           L+GVG L  + + A+ L AEEIPK+Y  FVD  DGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 65  LVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRY 124

Query: 122 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 181
           LQLQNVRV+FIPTEK DIHE GP++EVV  LVKH++AAPNQ ATIYDMKER  DG+NYYT
Sbjct: 125 LQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYT 184

Query: 182 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEY L +  ++ TSFAT+A+ N RYYTL+VGAN+RRWR+ +  L+VVADS ++L I
Sbjct: 185 FEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

[Close]

BLAST of CcUC09G183100 vs. ExPASy Swiss-Prot
Match: P82538 (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPL1 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.5e-35
Identity = 75/192 (39.06%), Postives = 111/192 (57.81%), Query Frame = 0


Query: 44  STERTSREEGHCNRRPLL-LGVGALATSLLTASPL-FAEEIPKNYRAFVDSTDGYSYYYP 103
           S+  +S  +  C RR ++  GV A   SLL+ +PL FA E  K + A  D+ D Y++ YP
Sbjct: 37  SSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYP 96

Query: 104 SDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQ 163
             W+E      D  +KD    L++V V  +PT K+ I E GP  ++   L+K   A PNQ
Sbjct: 97  FGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQ 156

Query: 164 KATIYDMKERTIDGRNYYTFEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYR 223
           K T+ D  E  +DG+ YY FE+ + +R ++R +  TI + NG +YTL  GAN+RRW + +
Sbjct: 157 KTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMK 216

Query: 224 DMLKVVADSFRV 234
           D L  V DSF++
Sbjct: 217 DRLHTVVDSFKI 228

[Close]

BLAST of CcUC09G183100 vs. ExPASy Swiss-Prot
Match: O23403 (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD1 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 9.1e-05
Identity = 50/224 (22.32%), Postives = 93/224 (41.52%), Query Frame = 0


Query: 41  INCSTERTSREEGHCNRRPLLLGVGALATSLLTAS---PLFAEEIPKNYRAFVDSTDGYS 100
           INC T+  +++     RR  ++ +G L + L+ +    P      P  +R ++D+ DGYS
Sbjct: 65  INCLTD--AKQVCAVGRRKSMM-MGLLMSGLIVSQANLPTAFASTPV-FREYIDTFDGYS 124

Query: 101 YYYPSDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKD---IHEEGPLDEVVNFLVKH 160
           + YP +W +      D  F+D  +  +N+ V+F      +   + + G  +EV   +++ 
Sbjct: 125 FKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQ 184

Query: 161 --------RYAAPNQKATIYDMKERTIDGRNYYTFEYKLSSRA----------------- 220
                   R     Q   +        DG+ YY  E  + S A                 
Sbjct: 185 YLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLE 244

Query: 221 FSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRV 234
           ++R   A + + N R Y++ +   ++ +      L+ V DSFRV
Sbjct: 245 WNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRV 284

[Close]

BLAST of CcUC09G183100 vs. ExPASy TrEMBL
Match: A0A6J1GN93 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455996 PE=4 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 2.7e-124
Identity = 220/236 (93.22%), Postives = 228/236 (96.61%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPL 60
           MAVSTSCLSWVPT+ASNWK RLLPFNEPSTATCS+SSC+TI CSTERTSR E HCNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTIICSTERTSRVESHCNRRPL 60

Query: 61  LLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALA SL  ASPLFAEE+PKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALAASLFAASPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180
           LQLQNVRVKFIPTEKKDIHEEG LDEVVNFLVKHRYAAPNQKATIYDMKERTIDG+NYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRA+SRTSFATIA+ANGRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CcUC09G183100 vs. ExPASy TrEMBL
Match: A0A6J1JS28 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487305 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 2.9e-123
Identity = 218/236 (92.37%), Postives = 227/236 (96.19%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPL 60
           MAVSTSCLSWVPT+ASNWK RLLPFNEPSTATCS+SSC+T+ CSTERTSR E  CNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60

Query: 61  LLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSL  A PLFAEE+PKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180
           LQLQNVRVKFIPTEKKDIHEEG LDEVVNFLVKHRYAAPNQKATIYDMKERTIDG+NYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRA+SRTSFATIA+ANGRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CcUC09G183100 vs. ExPASy TrEMBL
Match: A0A1S3CKZ3 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501649 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.1e-122
Identity = 221/236 (93.64%), Postives = 228/236 (96.61%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPL 60
           MAVSTSCLSWVPTTASNWKL+LLPFNEP+TAT SFSS STINCS ERTSR+EG  NRRPL
Sbjct: 1   MAVSTSCLSWVPTTASNWKLKLLPFNEPTTATSSFSSSSTINCSIERTSRDEGIYNRRPL 60

Query: 61  LLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLL ASPLFA+E+PKNYRAFVD TDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLLGASPLFAQEVPKNYRAFVDYTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQK TIYDMKERTIDG+NYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKVTIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAFSRT+FATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAFSRTAFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CcUC09G183100 vs. ExPASy TrEMBL
Match: A0A6J1GN22 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455996 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 2.5e-122
Identity = 219/236 (92.80%), Postives = 227/236 (96.19%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPL 60
           MAVSTSCLSWVPT+ASNWK RLLPFNEPSTATCS+SSC+TI CSTERTSR E HCNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTIICSTERTSRVESHCNRRPL 60

Query: 61  LLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALA SL  ASPLFA E+PKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALAASLFAASPLFA-EVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180
           LQLQNVRVKFIPTEKKDIHEEG LDEVVNFLVKHRYAAPNQKATIYDMKERTIDG+NYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRA+SRTSFATIA+ANGRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 235

[Close]

BLAST of CcUC09G183100 vs. ExPASy TrEMBL
Match: A0A0A0KNR7 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G505780 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.3e-122
Identity = 223/236 (94.49%), Postives = 226/236 (95.76%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCNRRPL 60
           MAVSTSCLSWVP TASNWKL+LLPFNEPSTAT SFSS STINCS ER SR+EG  NRRPL
Sbjct: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60

Query: 61  LLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLL ASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQK TIYDMKERTIDG+ YYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKIYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CcUC09G183100 vs. TAIR 10
Match: AT2G39470.1 (PsbP-like protein 2 )

HSP 1 Score: 268.9 bits (686), Expect = 4.0e-72
Identity = 138/236 (58.47%), Postives = 169/236 (71.61%), Query Frame = 0


Query: 2   AVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEG-HCNRRPL 61
           ++S  C  + PT +   K  +L  N    A C  SS    + S     +  G +  RR  
Sbjct: 5   SLSIRCGGFSPTISH--KTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRRQA 64

Query: 62  LLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 121
           L+GVG L  + + A+ L AEEIPK+Y  FVD  DGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 65  LVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRY 124

Query: 122 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 181
           LQLQNVRV+FIPTEK DIHE GP++EVV  LVKH++AAPNQ ATIYDMKER  DG+NYYT
Sbjct: 125 LQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYT 184

Query: 182 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEY L +  ++ TSFAT+A+ N RYYTL+VGAN+RRWR+ +  L+VVADS ++L I
Sbjct: 185 FEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

[Close]

BLAST of CcUC09G183100 vs. TAIR 10
Match: AT2G39470.2 (PsbP-like protein 2 )

HSP 1 Score: 264.2 bits (674), Expect = 9.8e-71
Identity = 137/238 (57.56%), Postives = 169/238 (71.01%), Query Frame = 0


Query: 2   AVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCN---RR 61
           ++S  C  + PT +   ++ L P   PS   C         C     + ++G  N   RR
Sbjct: 5   SLSIRCGGFSPTISHKTEI-LCP--NPSLKAC---------CLLSSGAYQKGSGNNWKRR 64

Query: 62  PLLLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKD 121
             L+GVG L  + + A+ L AEEIPK+Y  FVD  DGYSYYYPSDWREFDFRAHDSAFKD
Sbjct: 65  QALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKD 124

Query: 122 RYLQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNY 181
           RYLQLQNVRV+FIPTEK DIHE GP++EVV  LVKH++AAPNQ ATIYDMKER  DG+NY
Sbjct: 125 RYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNY 184

Query: 182 YTFEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           YTFEY L +  ++ TSFAT+A+ N RYYTL+VGAN+RRWR+ +  L+VVADS ++L I
Sbjct: 185 YTFEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 230

[Close]

BLAST of CcUC09G183100 vs. TAIR 10
Match: AT2G39470.3 (PsbP-like protein 2 )

HSP 1 Score: 179.1 bits (453), Expect = 4.2e-45
Identity = 98/172 (56.98%), Postives = 117/172 (68.02%), Query Frame = 0


Query: 2   AVSTSCLSWVPTTASNWKLRLLPFNEPSTATCSFSSCSTINCSTERTSREEGHCN---RR 61
           ++S  C  + PT +   ++ L P   PS   C         C     + ++G  N   RR
Sbjct: 5   SLSIRCGGFSPTISHKTEI-LCP--NPSLKAC---------CLLSSGAYQKGSGNNWKRR 64

Query: 62  PLLLGVGALATSLLTASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKD 121
             L+GVG L  + + A+ L AEEIPK+Y  FVD  DGYSYYYPSDWREFDFRAHDSAFKD
Sbjct: 65  QALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKD 124

Query: 122 RYLQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKATIYDMKE 171
           RYLQLQNVRV+FIPTEK DIHE GP++EVV  LVKH++AAPNQ ATIYDMKE
Sbjct: 125 RYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKE 164

[Close]

BLAST of CcUC09G183100 vs. TAIR 10
Match: AT3G55330.1 (PsbP-like protein 1 )

HSP 1 Score: 149.1 bits (375), Expect = 4.6e-36
Identity = 75/192 (39.06%), Postives = 111/192 (57.81%), Query Frame = 0


Query: 44  STERTSREEGHCNRRPLL-LGVGALATSLLTASPL-FAEEIPKNYRAFVDSTDGYSYYYP 103
           S+  +S  +  C RR ++  GV A   SLL+ +PL FA E  K + A  D+ D Y++ YP
Sbjct: 37  SSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYP 96

Query: 104 SDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQ 163
             W+E      D  +KD    L++V V  +PT K+ I E GP  ++   L+K   A PNQ
Sbjct: 97  FGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQ 156

Query: 164 KATIYDMKERTIDGRNYYTFEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYR 223
           K T+ D  E  +DG+ YY FE+ + +R ++R +  TI + NG +YTL  GAN+RRW + +
Sbjct: 157 KTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMK 216

Query: 224 DMLKVVADSFRV 234
           D L  V DSF++
Sbjct: 217 DRLHTVVDSFKI 228

[Close]

BLAST of CcUC09G183100 vs. TAIR 10
Match: AT4G15510.1 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 48.9 bits (115), Expect = 6.5e-06
Identity = 50/224 (22.32%), Postives = 93/224 (41.52%), Query Frame = 0


Query: 41  INCSTERTSREEGHCNRRPLLLGVGALATSLLTAS---PLFAEEIPKNYRAFVDSTDGYS 100
           INC T+  +++     RR  ++ +G L + L+ +    P      P  +R ++D+ DGYS
Sbjct: 65  INCLTD--AKQVCAVGRRKSMM-MGLLMSGLIVSQANLPTAFASTPV-FREYIDTFDGYS 124

Query: 101 YYYPSDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKD---IHEEGPLDEVVNFLVKH 160
           + YP +W +      D  F+D  +  +N+ V+F      +   + + G  +EV   +++ 
Sbjct: 125 FKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQ 184

Query: 161 --------RYAAPNQKATIYDMKERTIDGRNYYTFEYKLSSRA----------------- 220
                   R     Q   +        DG+ YY  E  + S A                 
Sbjct: 185 YLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLE 244

Query: 221 FSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRV 234
           ++R   A + + N R Y++ +   ++ +      L+ V DSFRV
Sbjct: 245 WNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRV 284

The following BLAST results are available for this feature:

BLAST of CcUC09G183100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889544.1	1.7e-128	97.46	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Beni...	[more]
XP_038889545.1	1.5e-126	97.03	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Beni...	[more]
XP_022953447.1	5.5e-124	93.22	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucu...	[more]
XP_023534746.1	3.6e-123	92.37	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucu...	[more]
XP_022990449.1	6.1e-123	92.37	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucu...	[more]

BLAST of CcUC09G183100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80634	5.6e-71	58.47	Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis t...	[more]
P82538	6.5e-35	39.06	PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPL1 PE=1 ...	[more]
O23403	9.1e-05	22.32	PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CcUC09G183100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GN93	2.7e-124	93.22	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cu...	[more]
A0A6J1JS28	2.9e-123	92.37	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cu...	[more]
A0A1S3CKZ3	1.1e-122	93.64	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cu...	[more]
A0A6J1GN22	2.5e-122	92.80	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 OS=Cu...	[more]
A0A0A0KNR7	3.3e-122	94.49	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G505780 PE=4 S...	[more]

BLAST of CcUC09G183100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39470.1	4.0e-72	58.47	PsbP-like protein 2	[more]
AT2G39470.2	9.8e-71	57.56	PsbP-like protein 2	[more]
AT2G39470.3	4.2e-45	56.98	PsbP-like protein 2	[more]
AT3G55330.1	4.6e-36	39.06	PsbP-like protein 1	[more]
AT4G15510.1	6.5e-06	22.32	Photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 85..233 e-value: 4.4E-40 score: 137.4
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 73..233 e-value: 6.0E-38 score: 132.4
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 1..236
None	No IPR available	PANTHER	PTHR31407:SF10	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 1, CHLOROPLASTIC	coord: 1..236
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 87..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G183100.1	CcUC09G183100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding