CcUC09G179770 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G179770
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr09: 30249438 .. 30250252 (-)
RNA-Seq Expression	CcUC09G179770
Synteny	CcUC09G179770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGAGGGGGAGAGGATTAATAAGGAAAAAGTTTCAGACATCCAAGGAAGGAATAAAGCAGCATAAGCCCTCAAGCCTGGCGAAGGCGAAAGCTCTTAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTTGGAATTGTCATCATCAACACATAAAGTTGAACAAAATAAGCAACCCATACCAACAACTAAACACGAGAGAGAAGTTAAATTCCTCGAAATTCATTAAAACAATGAATGGAACTAAATTGATAGAAGTGGGAAGTAGAGAATTATAAGAACTCAGACATCCAAGGAAGGATAAAGCAGCATCAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTTAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTGGAGATATCATCATTGTTCATACAAATTCAAATGGTGAATCACATAAAATTAATAGGAAAAAAAATTATCAAAACAAGTCAAGAAACCGACAGAACGAATTGACCAATTGAAGAGAGTGCTCAGACAGCCAAGGGTATATCAATCAGATCCCGGGAATGGTACCCAGATCAGAAACTCTAGTCCATAAAAATAGCATCGTCACAGCACTTGAGCTAACATCAAAAAGATGAAACAGAAGATAAGAATTGAAGTTGAAAGGGGGAGGAAAAGGGAAGTTTTGAAAACTATGCAACATGTCAAAGCGTAAAGATGCACCAAGATCATAGGTTTTTGATAAAAACTTAAACTGCAGAGATGAAAATCAAGAATGGAGGAAACGATGATGTGGAGAACAATGTGGAAATGCTGAGTGTTTATAGGCAGGACATCGAC

mRNA sequence

TCGAGGGGGAGAGGATTAATAAGGAAAAAGTTTCAGACATCCAAGGAAGGAATAAAGCAGCATAAGCCCTCAAGCCTGGCGAAGGCGAAAGCTCTTAGGCGGCCACTGCGAATCATCAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTTAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTGGAGATATCATCATTGTTCATACAAATTCAAATGGAAAAAAAATTATCAAAACAAGTCAAGAAACCGACAGAACGAATTGACCAATTGAAGAGAGTGCTCAGACAGCCAAGGGTATATCAATCAGATCCCGGGAATGAGATGAAAATCAAGAATGGAGGAAACGATGATGTGGAGAACAATGTGGAAATGCTGAGTGTTTATAGGCAGGACATCGAC

Coding sequence (CDS)

TCGAGGGGGAGAGGATTAATAAGGAAAAAGTTTCAGACATCCAAGGAAGGAATAAAGCAGCATAAGCCCTCAAGCCTGGCGAAGGCGAAAGCTCTTAGGCGGCCACTGCGAATCATCAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTTAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTGGAGATATCATCATTGTTCATACAAATTCAAATGGAAAAAAAATTATCAAAACAAGTCAAGAAACCGACAGAACGAATTGACCAATTGAAGAGAGTGCTCAGACAGCCAAGGGTATATCAATCAGATCCCGGGAATGAGATGAAAATCAAGAATGGAGGAAACGATGATGTGGAGAACAATGTGGAAATGCTGAGTGTTTATAGGCAGGACATCGAC

Protein sequence

SRGRGLIRKKFQTSKEGIKQHKPSSLAKAKALRRPLRIISSQARRRRKLLGGHCECFEKQALEISSLFIQIQMEKKLSKQVKKPTERIDQLKRVLRQPRVYQSDPGNEMKIKNGGNDDVENNVEMLSVYRQDID

Homology

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BLAST of CcUC09G179770 vs. ExPASy TrEMBL
Match: A0A6N2KF19 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS72789 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 39/52 (75.00%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 18  IKQHKPSSLAKAKALRRPLRI--------ISSQARRRRKLLGGHCECFEKQA 62
           IKQHK SS AKAKALRRPLRI        I SQA RRRK LGGHCECFEKQA
Sbjct: 65  IKQHKLSSPAKAKALRRPLRIHPRKDKSSICSQAWRRRKHLGGHCECFEKQA 116

The following BLAST results are available for this feature:

BLAST of CcUC09G179770 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC09G179770 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC09G179770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2KF19	1.5e-07	75.00	Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS7278...	[more]

BLAST of CcUC09G179770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G179770.1	CcUC09G179770.1	mRNA