CcUC09G179590 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G179590
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	30S ribosomal protein S2, chloroplastic
Location	CicolChr09: 29838111 .. 29838485 (-)
RNA-Seq Expression	CcUC09G179590
Synteny	CcUC09G179590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGATAGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGTATTAAATATATGACGGGGTTACCCGATATTGTAATAATCGTTGATCAACAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTAGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGATCCCGATCTCGCAGATATTTCGATTCCAGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCTGAGGGTCGTTCTAGCTCTATACAAAATTCTTGA

mRNA sequence

ATGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGATAGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGTATTAAATATATGACGGGGTTACCCGATATTGTAATAATCGTTGATCAACAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTAGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGATCCCGATCTCGCAGATATTTCGATTCCAGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCTGAGGGTCGTTCTAGCTCTATACAAAATTCTTGA

Coding sequence (CDS)

ATGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGATAGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGTATTAAATATATGACGGGGTTACCCGATATTGTAATAATCGTTGATCAACAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTAGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGATCCCGATCTCGCAGATATTTCGATTCCAGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCTGAGGGTCGTTCTAGCTCTATACAAAATTCTTGA

Protein sequence

MRLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIQNS

Homology

[Close]

BLAST of CcUC09G179590 vs. NCBI nr
Match: YP_009752064.1 (ribosomal protein S2 [Dendrosicyos socotranus] >QIT05474.1 ribosomal protein S2 [Dendrosicyos socotranus])

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-59
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK GGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE
Sbjct: 114 RLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI
Sbjct: 174 YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 233

Query: 122 QNS 125
           +NS
Sbjct: 234 RNS 236

[Close]

BLAST of CcUC09G179590 vs. NCBI nr
Match: ASY96801.1 (ribosomal protein S2 [Cucumis melo var. momordica] >ASY96975.1 ribosomal protein S2 [Cucumis melo var. cantalupo] >ASY97323.1 ribosomal protein S2 [Cucumis melo var. flexuosus] >ASY97062.1 ribosomal protein S2 [Cucumis melo var. cantalupo] >ASY97236.1 ribosomal protein S2 [Cucumis melo var. cantalupo])

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-59
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK GGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE
Sbjct: 114 RLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI
Sbjct: 174 YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 233

Query: 122 QNS 125
           +NS
Sbjct: 234 RNS 236

[Close]

BLAST of CcUC09G179590 vs. NCBI nr
Match: YP_009317375.1 (ribosomal protein S2 [Coccinia grandis] >YP_009325978.1 ribosomal protein S2 [Citrullus lanatus] >YP_009348020.1 ribosomal protein S2 [Citrullus mucosospermus] >YP_009420783.1 ribosomal protein S2 [Citrullus colocynthis] >YP_009431546.1 ribosomal protein S2 [Citrullus amarus] >YP_009431631.1 ribosomal protein S2 [Citrullus rehmii] >YP_009447439.1 ribosomal protein S2 [Cucurbita maxima] >YP_009456135.1 ribosomal protein S2 [Lagenaria siceraria] >YP_009505069.1 ribosomal protein S2 [Cucurbita pepo] >YP_010131083.1 ribosomal protein S2 [Benincasa hispida] >ALO22031.1 ribosomal protein S2 [Cucurbita ecuadorensis] >ALO22147.1 ribosomal protein S2 [Cucurbita ficifolia] >ALO22201.1 ribosomal protein S2 [Cucurbita foetidissima] >ALO22335.1 ribosomal protein S2 [Cucurbita maxima subsp. andreana] >ALO22560.1 ribosomal protein S2 [Cucurbita pepo subsp. fraterna] >ALO22610.1 ribosomal protein S2 [Cucurbita pepo subsp. ovifera] >ALO22698.1 ribosomal protein S2 [Cucurbita pepo var. ozarkana] >ALO22796.1 ribosomal protein S2 [Cucurbita pepo subsp. pepo] >ALO22851.1 ribosomal protein S2 [Cucurbita pepo var. texana] >ALO22893.1 ribosomal protein S2 [Cucurbita pedatifolia] >APW82450.1 ribosomal protein S2 [Citrullus lanatus subsp. vulgaris] >QNM38520.1 ribosomal protein S2 [Lagenaria siceraria var. microcarpa] >QZL38670.1 ribosomal protein S2 [Citrullus ecirrhosus])

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-59
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK GGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE
Sbjct: 114 RLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI
Sbjct: 174 YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 233

Query: 122 QNS 125
           +NS
Sbjct: 234 RNS 236

[Close]

BLAST of CcUC09G179590 vs. NCBI nr
Match: YP_009751895.1 (ribosomal protein S2 [Cyclanthera pedata] >YP_009945406.1 ribosomal protein S2 [Sechium edule] >QIT04122.1 ribosomal protein S2 [Sechium edule] >QIT04713.1 ribosomal protein S2 [Cyclanthera pedata] >QOE55936.1 ribosomal protein S2 [Sechium edule] >QWQ50142.1 ribosomal protein S2 [Cyclanthera pedata])

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-59
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK GGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE
Sbjct: 114 RLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI
Sbjct: 174 YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 233

Query: 122 QNS 125
           +NS
Sbjct: 234 RNS 236

[Close]

BLAST of CcUC09G179590 vs. NCBI nr
Match: YP_009751979.1 (ribosomal protein S2 [Cionosicys macranthus] >QIT05220.1 ribosomal protein S2 [Cionosicys macranthus] >QZL38582.1 ribosomal protein S2 [Citrullus naudinianus])

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-59
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK GGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE
Sbjct: 114 RLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI
Sbjct: 174 YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 233

Query: 122 QNS 125
           +NS
Sbjct: 234 RNS 236

[Close]

BLAST of CcUC09G179590 vs. ExPASy Swiss-Prot
Match: Q4VZP4 (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 5.6e-62
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK GGLNRLPKRDAAM KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE
Sbjct: 114 RLHKFRDLRTEQKTGGLNRLPKRDAAMFKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI
Sbjct: 174 YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 233

Query: 122 QNS 125
           +NS
Sbjct: 234 RNS 236

[Close]

BLAST of CcUC09G179590 vs. ExPASy Swiss-Prot
Match: Q49L09 (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps2 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 9.8e-59
Identity = 115/122 (94.26%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK G LNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE
Sbjct: 114 RLHKFRDLRTEQKAGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           Y AL+ECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAI EGRSS I
Sbjct: 174 YTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYI 233

Query: 122 QN 124
           +N
Sbjct: 234 RN 235

[Close]

BLAST of CcUC09G179590 vs. ExPASy Swiss-Prot
Match: Q0ZJ31 (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 9.8e-59
Identity = 115/122 (94.26%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK G LNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE
Sbjct: 114 RLHKFRDLRTEQKTGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           Y AL+ECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAI EGRSS I
Sbjct: 174 YTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYI 233

Query: 122 QN 124
           +N
Sbjct: 234 RN 235

[Close]

BLAST of CcUC09G179590 vs. ExPASy Swiss-Prot
Match: Q1KXW9 (30S ribosomal protein S2, chloroplastic OS=Helianthus annuus OX=4232 GN=rps2 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 3.7e-58
Identity = 113/122 (92.62%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK GGL+RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQ EE
Sbjct: 114 RLHKFRDLRTEQKTGGLSRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQHEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           Y ALQECITLGIPTICLIDTNCDPDLADISIPANDDAI+SIRLILNKLVFAI EGRS  I
Sbjct: 174 YTALQECITLGIPTICLIDTNCDPDLADISIPANDDAISSIRLILNKLVFAICEGRSGYI 233

Query: 122 QN 124
           +N
Sbjct: 234 RN 235

[Close]

BLAST of CcUC09G179590 vs. ExPASy Swiss-Prot
Match: Q56P10 (30S ribosomal protein S2, chloroplastic OS=Lactuca sativa OX=4236 GN=rps2 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 3.7e-58
Identity = 113/122 (92.62%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK GGL+RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQ EE
Sbjct: 114 RLHKFRDLRTEQKTGGLDRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQHEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           Y ALQECITLGIPTICLIDTNCDPDLADISIPANDDAI+SIRLILNKLVFAI EGRS  I
Sbjct: 174 YTALQECITLGIPTICLIDTNCDPDLADISIPANDDAISSIRLILNKLVFAICEGRSGYI 233

Query: 122 QN 124
           +N
Sbjct: 234 RN 235

[Close]

BLAST of CcUC09G179590 vs. ExPASy TrEMBL
Match: A0A249RZA5 (30S ribosomal protein S2, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rps2 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.1e-60
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK GGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE
Sbjct: 114 RLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI
Sbjct: 174 YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 233

Query: 122 QNS 125
           +NS
Sbjct: 234 RNS 236

[Close]

BLAST of CcUC09G179590 vs. ExPASy TrEMBL
Match: A0A1P8LE54 (Ribosomal protein S2 OS=Citrullus mucosospermus OX=519315 GN=rps2 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.1e-60
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK GGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE
Sbjct: 114 RLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI
Sbjct: 174 YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 233

Query: 122 QNS 125
           +NS
Sbjct: 234 RNS 236

[Close]

BLAST of CcUC09G179590 vs. ExPASy TrEMBL
Match: A0A2Z2CQF0 (30S ribosomal protein S2, chloroplastic OS=Coccinia grandis OX=387127 GN=rps2 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.1e-60
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK GGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE
Sbjct: 114 RLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI
Sbjct: 174 YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 233

Query: 122 QNS 125
           +NS
Sbjct: 234 RNS 236

[Close]

BLAST of CcUC09G179590 vs. ExPASy TrEMBL
Match: X2F5D2 (30S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps2 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.1e-60
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK GGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE
Sbjct: 114 RLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI
Sbjct: 174 YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 233

Query: 122 QNS 125
           +NS
Sbjct: 234 RNS 236

[Close]

BLAST of CcUC09G179590 vs. ExPASy TrEMBL
Match: A0A286NFT4 (30S ribosomal protein S2, chloroplastic OS=Cucumis melo var. flexuosus OX=1120798 GN=rps2 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.1e-60
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK GGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE
Sbjct: 114 RLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI
Sbjct: 174 YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 233

Query: 122 QNS 125
           +NS
Sbjct: 234 RNS 236

[Close]

BLAST of CcUC09G179590 vs. TAIR 10
Match: ATCG00160.1 (ribosomal protein S2 )

HSP 1 Score: 214.2 bits (544), Expect = 6.1e-56
Identity = 109/123 (88.62%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 2   RLHKFRDLRTEQKIGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEE 61
           RLHKFRDLRTEQK  G NRLPKRDAA+LKRQLS L+TYLGGIKYMTGLPDIVII+DQQEE
Sbjct: 114 RLHKFRDLRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEE 173

Query: 62  YRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSI 121
           Y AL+ECITLGIPTI LIDTNC+PDLADISIPANDDAIASIR ILNKLVFAI EGRSS I
Sbjct: 174 YTALRECITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYI 233

Query: 122 QNS 125
           QNS
Sbjct: 234 QNS 236

The following BLAST results are available for this feature:

BLAST of CcUC09G179590 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009752064.1	1.5e-59	98.37	ribosomal protein S2 [Dendrosicyos socotranus] >QIT05474.1 ribosomal protein S2 ...	[more]
ASY96801.1	1.5e-59	98.37	ribosomal protein S2 [Cucumis melo var. momordica] >ASY96975.1 ribosomal protein...	[more]
YP_009317375.1	1.5e-59	98.37	ribosomal protein S2 [Coccinia grandis] >YP_009325978.1 ribosomal protein S2 [Ci...	[more]
YP_009751895.1	1.5e-59	98.37	ribosomal protein S2 [Cyclanthera pedata] >YP_009945406.1 ribosomal protein S2 [...	[more]
YP_009751979.1	1.5e-59	98.37	ribosomal protein S2 [Cionosicys macranthus] >QIT05220.1 ribosomal protein S2 [C...	[more]

BLAST of CcUC09G179590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP4	5.6e-62	97.56	30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 ...	[more]
Q49L09	9.8e-59	94.26	30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus O...	[more]
Q0ZJ31	9.8e-59	94.26	30S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 ...	[more]
Q1KXW9	3.7e-58	92.62	30S ribosomal protein S2, chloroplastic OS=Helianthus annuus OX=4232 GN=rps2 PE=...	[more]
Q56P10	3.7e-58	92.62	30S ribosomal protein S2, chloroplastic OS=Lactuca sativa OX=4236 GN=rps2 PE=3 S...	[more]

BLAST of CcUC09G179590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A249RZA5	7.1e-60	98.37	30S ribosomal protein S2, chloroplastic OS=Cucumis melo var. cantalupensis OX=36...	[more]
A0A1P8LE54	7.1e-60	98.37	Ribosomal protein S2 OS=Citrullus mucosospermus OX=519315 GN=rps2 PE=3 SV=1	[more]
A0A2Z2CQF0	7.1e-60	98.37	30S ribosomal protein S2, chloroplastic OS=Coccinia grandis OX=387127 GN=rps2 PE...	[more]
X2F5D2	7.1e-60	98.37	30S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps2 P...	[more]
A0A286NFT4	7.1e-60	98.37	30S ribosomal protein S2, chloroplastic OS=Cucumis melo var. flexuosus OX=112079...	[more]

BLAST of CcUC09G179590 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00160.1	6.1e-56	88.62	ribosomal protein S2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 88..102 score: 55.28 coord: 50..67 score: 39.83 coord: 67..78 score: 50.51
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 3..116 e-value: 2.9E-33 score: 115.0
IPR001865	Ribosomal protein S2	CDD	cd01425	RPS2	coord: 23..115 e-value: 6.75987E-36 score: 119.609
None	No IPR available	GENE3D	3.40.50.10490		coord: 6..124 e-value: 6.0E-36 score: 125.1
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	TIGRFAM	TIGR01011	TIGR01011	coord: 2..118 e-value: 2.5E-35 score: 119.7
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	PANTHER	PTHR12534	30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR	coord: 11..118
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 50..74
IPR023591	Ribosomal protein S2, flavodoxin-like domain superfamily	SUPERFAMILY	52313	Ribosomal protein S2	coord: 2..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G179590.1	CcUC09G179590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome