CcUC09G177370 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G177370
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr09: 22545043 .. 22545411 (+)
RNA-Seq Expression	CcUC09G177370
Synteny	CcUC09G177370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAATCAATTTCCCCCTCCAAAAATCGAACATTCCAGACCTCCTTCTTCTCCGATTCCGAAATCGACGTCGCAATTCAGCTTATTCATCTTAGCGAAGACTCCGATTACCACGACCACCTCACCGCCTCCCCCACCACTTCCAGCGACCACAAATCCCTCCCATCCGCCACCAACGCCGCTCCATTGGAAGACGACGGGATCCACACCAGCCGCCGCCTAGCCACTGCGCCGCCTACAACCTCTCTGATTGAACAAATCTTCGAAGAAATCGGAGACGGTTCGAATCGGAGAGGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTTATCTCCGTCAAATGA

mRNA sequence

ATGGCGAAATCAATTTCCCCCTCCAAAAATCGAACATTCCAGACCTCCTTCTTCTCCGATTCCGAAATCGACGTCGCAATTCAGCTTATTCATCTTAGCGAAGACTCCGATTACCACGACCACCTCACCGCCTCCCCCACCACTTCCAGCGACCACAAATCCCTCCCATCCGCCACCAACGCCGCTCCATTGGAAGACGACGGGATCCACACCAGCCGCCGCCTAGCCACTGCGCCGCCTACAACCTCTCTGATTGAACAAATCTTCGAAGAAATCGGAGACGGTTCGAATCGGAGAGGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTTATCTCCGTCAAATGA

Coding sequence (CDS)

ATGGCGAAATCAATTTCCCCCTCCAAAAATCGAACATTCCAGACCTCCTTCTTCTCCGATTCCGAAATCGACGTCGCAATTCAGCTTATTCATCTTAGCGAAGACTCCGATTACCACGACCACCTCACCGCCTCCCCCACCACTTCCAGCGACCACAAATCCCTCCCATCCGCCACCAACGCCGCTCCATTGGAAGACGACGGGATCCACACCAGCCGCCGCCTAGCCACTGCGCCGCCTACAACCTCTCTGATTGAACAAATCTTCGAAGAAATCGGAGACGGTTCGAATCGGAGAGGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTTATCTCCGTCAAATGA

Protein sequence

MAKSISPSKNRTFQTSFFSDSEIDVAIQLIHLSEDSDYHDHLTASPTTSSDHKSLPSATNAAPLEDDGIHTSRRLATAPPTTSLIEQIFEEIGDGSNRRGRKRRSRSVYEIYKLTKPVISVK

Homology

[Close]

BLAST of CcUC09G177370 vs. NCBI nr
Match: KAG6571728.1 (hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 94/126 (74.60%), Postives = 101/126 (80.16%), Query Frame = 0


Query: 1   MAKSISPSKNRTFQTSFFSDSEIDVAIQLIHLSEDSDYHDHLTASPTTSSDHKSL---PS 60
           MAKSIS  KNR F+TS FSDSEIDVAIQL+HLSEDSDY  +  AS T+ SD KS+    S
Sbjct: 1   MAKSISSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASATS 60

Query: 61  ATNAAPLEDDGIH-TSRRLATAPPTTSLIEQIFEEIGDGSNRRGRKRRSRSVYEIYKLTK 120
           ATNAA +EDDG H +SRR AT  PTTSLIE IFEEIGD SNRR RKRRSRSVYEIYKLTK
Sbjct: 61  ATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK 120

Query: 121 PVISVK 123
           P ISVK
Sbjct: 121 PFISVK 126

[Close]

BLAST of CcUC09G177370 vs. NCBI nr
Match: KAG6588821.1 (hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.4 bits (381), Expect = 5.1e-33
Identity = 87/124 (70.16%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 1   MAKSISPSKNRTFQTSFFSDSEIDVAIQLIHLSEDSDYHDHLTASPTTSSDHKSLPSA-- 60
           MA+S+S S+NR FQTS FSDSEIDVAIQLIHLSEDSDYHD L AS T+ SD KSL SA  
Sbjct: 1   MAESVSTSRNRRFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASASN 60

Query: 61  TNAAPLEDDGIHTSRRLATAPPTTSLIEQIFEEIGDGSNRRGRKRRSRSVYEIYKLTKPV 120
           +NA  +EDDG +  RR     P    IE I+EEIGDG+NRR RKRRSRSVYEIYKLTKPV
Sbjct: 61  SNADEMEDDGRNNGRRGTKTTP----IEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKPV 120

Query: 121 ISVK 123
           I VK
Sbjct: 121 IFVK 120

The following BLAST results are available for this feature:

BLAST of CcUC09G177370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571728.1	1.4e-35	74.60	hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588821.1	5.1e-33	70.16	hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC09G177370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC09G177370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC09G177370 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G177370.1	CcUC09G177370.1	mRNA