CcUC09G176710 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G176710
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionIntegrase catalytic domain-containing protein
LocationCicolChr09: 18958343 .. 18959038 (+)
RNA-Seq ExpressionCcUC09G176710
SyntenyCcUC09G176710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACATTTGGGGAATGTAATATTTACCACATTACTATCTGGCTGAATACGTGATATCTTTCCTGATGGAACTTGTGTGCATATCCTTCCCTTGTGGATCCAACTTTCTCATTATCCTAGTGTTTTCTCTGGTAGTACAAAAACAATAGTAGTGTACCATTCTGGTTAGTCAAAGAAGTGCGTGAACTAATACTGATTTTCTTGATACAGAAGGACAAAGTCAATTTGCACATATTGTTGCATTTCTGCGCACGTGGTTGATAAGTGTTATAAGTTGCATGGAAATTCTCCTGGGTACAAGTTCAGACAGTGGAACAATTCGTGCGGCGTCCATTCTCCAAGAGTGGTTGATTTTCACAACAGTGAAAATGATTTGGAAAATCTAGCTTCTGCTGCCATGGCTGATGGAAAGAGTTCCACCGAGAGTTTTGTTTCATCTCTCAGCCAAGGGCAATGTCAAAACCAGACCTTGATGTTAAGTGGTCGTCAATCAGCTGCTAAGGTTTACACTGACACTACAGTTGAAGAATAAAAGGATAGGGAAGTACACAATATCCAGCCTCTTCTTGATTCCTCAAGTACTATTTTTTATTTTTTATTTTTTCTCTTTGACGCATATTCTGGATGTTTTTACTATATTGTCAAATCATGATAACACATTTTTGTTGCACACGTTGGTGAAGCTCGAATATCAT

mRNA sequence

ATGCACATTTGGGGAATAAGGACAAAGTCAATTTGCACATATTGTTGCATTTCTGCGCACGTGGTTGATAAGTGTTATAAGTTGCATGGAAATTCTCCTGGGTACAAGTTCAGACAGTGGAACAATTCGTGCGGCGTCCATTCTCCAAGAGTGGTTGATTTTCACAACAGTGAAAATGATTTGGAAAATCTAGCTTCTGCTGCCATGGCTGATGGAAAGAGTTCCACCGAGAGTTTTGTTTCATCTCTCAGCCAAGGGCAATGTCAAAACCAGACCTTGATGTTAAGTGGTCGTCAATCAGCTGCTAAGGTTTACACTGACACTACAGTTGAAGAATAAAAGGATAGGGAAGTACACAATATCCAGCCTCTTCTTGATTCCTCAAGTACTATTTTTTATTTTTTATTTTTTCTCTTTGACGCATATTCTGGATGTTTTTACTATATTGTCAAATCATGATAACACATTTTTGTTGCACACGTTGGTGAAGCTCGAATATCAT

Coding sequence (CDS)

ATGCACATTTGGGGAATAAGGACAAAGTCAATTTGCACATATTGTTGCATTTCTGCGCACGTGGTTGATAAGTGTTATAAGTTGCATGGAAATTCTCCTGGGTACAAGTTCAGACAGTGGAACAATTCGTGCGGCGTCCATTCTCCAAGAGTGGTTGATTTTCACAACAGTGAAAATGATTTGGAAAATCTAGCTTCTGCTGCCATGGCTGATGGAAAGAGTTCCACCGAGAGTTTTGTTTCATCTCTCAGCCAAGGGCAATGTCAAAACCAGACCTTGATGTTAAGTGGTCGTCAATCAGCTGCTAAGGTTTACACTGACACTACAGTTGAAGAATAA

Protein sequence

MHIWGIRTKSICTYCCISAHVVDKCYKLHGNSPGYKFRQWNNSCGVHSPRVVDFHNSENDLENLASAAMADGKSSTESFVSSLSQGQCQNQTLMLSGRQSAAKVYTDTTVEE
Homology
BLAST of CcUC09G176710 vs. NCBI nr
Match: KAA8536734.1 (hypothetical protein F0562_029212 [Nyssa sinensis])

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-06
Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 0

Query: 7   RTKSICTYCCISAHVVDKCYKLHGNSPGYKFRQWNNSCGVHSPRVVDFHNSENDLENLAS 66
           R +  CT+C I  H VD+CYK+HG  PGYKFR  NNS          +  S +D      
Sbjct: 286 RDRPYCTHCKILGHTVDRCYKIHGYPPGYKFRSNNNS------NAAAYQVSTSD------ 345

Query: 67  AAMADGKSSTESFVSSLSQGQCQNQTLMLSGRQSAAKVYTD 108
              +D  +S E FV +L+  Q Q    MLS   S++K  T+
Sbjct: 346 -DRSDQSNSFEGFVQNLNSNQYQQLMSMLSTHLSSSKKVTN 373

BLAST of CcUC09G176710 vs. NCBI nr
Match: XP_022145891.1 (uncharacterized protein LOC111015239 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 9   KSICTYCCISAHVVDKCYKLHGNSPGY-------KFRQWNNSCGV-HSPRVVDFHNSEND 68
           +S CT+C +  HV+DKCYKLHG  PGY       +  Q +N  G  HS  VV    SE +
Sbjct: 266 RSFCTHCGLRGHVIDKCYKLHGYPPGYRANNPAARIGQLHNPNGTSHSNGVVANQVSEKN 325

Query: 69  LENLASAAMADGKSSTESFVSSLSQGQCQNQTLMLSGRQSAAKVYTDT 109
           ++  +S A+    +S+ +F +SL+  Q      ML     AAK  T T
Sbjct: 326 VDITSSPAIQRPSNSSPAFFNSLNSSQYSQLMEMLQSHLQAAKPETIT 373

BLAST of CcUC09G176710 vs. NCBI nr
Match: XP_022856063.1 (uncharacterized protein LOC111377235, partial [Olea europaea var. sylvestris])

HSP 1 Score: 57.4 bits (137), Expect = 9.3e-05
Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 0

Query: 2   HIWGIRTKSICTYCCISAHVVDKCYKLHGNSPGYKFRQWNNSCGV--HSPRVVDFHNSEN 61
           H +  + K ICTYC +  H VDKCYKLHG  PGYK +Q +N      + PR    H + N
Sbjct: 211 HKFQKKEKPICTYCKLVGHSVDKCYKLHGYPPGYKMKQRSNFTDQVDNQPR----HIAAN 270

Query: 62  DLENLASAAMADGKSSTESFVSSLSQGQCQNQTLMLSGRQSAAKVYT 107
            +     +  A   ++ E F+ SL+  Q Q    ML    ++AK  T
Sbjct: 271 QVVFANKSEQA--HTNAEDFMHSLNHTQYQQLMNMLGNHLTSAKTNT 311

BLAST of CcUC09G176710 vs. NCBI nr
Match: XP_022158788.1 (uncharacterized protein LOC111025254 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-04
Identity = 35/103 (33.98%), Postives = 48/103 (46.60%), Query Frame = 0

Query: 7   RTKSICTYCCISAHVVDKCYKLHGNSPGYKFRQWNNSCGVHSPRVVDFHNSENDLENLAS 66
           + K +CT+C I  H  DKCY+LHG  PG++F    +S          F NS N   N  S
Sbjct: 112 KDKPVCTHCGIIGHTTDKCYQLHGYPPGHRFYGQKSS----------FSNSSNSRSNSES 171

Query: 67  AAMADGKSSTE-SFVSSLSQGQCQNQTLMLSGRQSAAKVYTDT 109
              A   SS     ++S +  QCQ    +L    S  + +TDT
Sbjct: 172 VKSASSLSSNSLDSLASFTADQCQGLLTLLLSHLSTVQRHTDT 204

BLAST of CcUC09G176710 vs. NCBI nr
Match: XP_022878639.1 (uncharacterized protein LOC111396434 [Olea europaea var. sylvestris])

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-04
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 7   RTKSICTYCCISAHVVDKCYKLHGNSPGYKFRQ-WNNSCGVHSPR-VVDFHNSENDLENL 65
           + + +CTYC I+ H VDKCYKLHG  PGYK +Q +N+  G  S + VV+   SE++ E L
Sbjct: 217 KERPMCTYCGIAGHSVDKCYKLHGYPPGYKMKQKFNDQVGNQSRQVVVNQVTSESNSEQL 276

BLAST of CcUC09G176710 vs. ExPASy TrEMBL
Match: A0A5J5B2C5 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_029212 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.1e-06
Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 0

Query: 7   RTKSICTYCCISAHVVDKCYKLHGNSPGYKFRQWNNSCGVHSPRVVDFHNSENDLENLAS 66
           R +  CT+C I  H VD+CYK+HG  PGYKFR  NNS          +  S +D      
Sbjct: 286 RDRPYCTHCKILGHTVDRCYKIHGYPPGYKFRSNNNS------NAAAYQVSTSD------ 345

Query: 67  AAMADGKSSTESFVSSLSQGQCQNQTLMLSGRQSAAKVYTD 108
              +D  +S E FV +L+  Q Q    MLS   S++K  T+
Sbjct: 346 -DRSDQSNSFEGFVQNLNSNQYQQLMSMLSTHLSSSKKVTN 373

BLAST of CcUC09G176710 vs. ExPASy TrEMBL
Match: A0A6J1CXR2 (uncharacterized protein LOC111015239 OS=Momordica charantia OX=3673 GN=LOC111015239 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.3e-06
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 9   KSICTYCCISAHVVDKCYKLHGNSPGY-------KFRQWNNSCGV-HSPRVVDFHNSEND 68
           +S CT+C +  HV+DKCYKLHG  PGY       +  Q +N  G  HS  VV    SE +
Sbjct: 266 RSFCTHCGLRGHVIDKCYKLHGYPPGYRANNPAARIGQLHNPNGTSHSNGVVANQVSEKN 325

Query: 69  LENLASAAMADGKSSTESFVSSLSQGQCQNQTLMLSGRQSAAKVYTDT 109
           ++  +S A+    +S+ +F +SL+  Q      ML     AAK  T T
Sbjct: 326 VDITSSPAIQRPSNSSPAFFNSLNSSQYSQLMEMLQSHLQAAKPETIT 373

BLAST of CcUC09G176710 vs. ExPASy TrEMBL
Match: A0A6J1DX32 (uncharacterized protein LOC111025254 OS=Momordica charantia OX=3673 GN=LOC111025254 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.7e-05
Identity = 35/103 (33.98%), Postives = 48/103 (46.60%), Query Frame = 0

Query: 7   RTKSICTYCCISAHVVDKCYKLHGNSPGYKFRQWNNSCGVHSPRVVDFHNSENDLENLAS 66
           + K +CT+C I  H  DKCY+LHG  PG++F    +S          F NS N   N  S
Sbjct: 112 KDKPVCTHCGIIGHTTDKCYQLHGYPPGHRFYGQKSS----------FSNSSNSRSNSES 171

Query: 67  AAMADGKSSTE-SFVSSLSQGQCQNQTLMLSGRQSAAKVYTDT 109
              A   SS     ++S +  QCQ    +L    S  + +TDT
Sbjct: 172 VKSASSLSSNSLDSLASFTADQCQGLLTLLLSHLSTVQRHTDT 204

BLAST of CcUC09G176710 vs. ExPASy TrEMBL
Match: A0A5J4ZHF9 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_017116 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 38/100 (38.00%), Postives = 47/100 (47.00%), Query Frame = 0

Query: 7   RTKSICTYCCISAHVVDKCYKLHGNSPGYKFRQWNNS-CGVHSPRVVDFHNSENDLENLA 66
           R +  CT+C I  H VD+CYK+HG  PGYKFR  NNS    H     D            
Sbjct: 239 RDRPYCTHCKILGHTVDRCYKIHGYPPGYKFRSNNNSNAAAHQVSTSD------------ 298

Query: 67  SAAMADGKSSTESFVSSLSQGQCQNQTLMLSGRQS-AAKV 105
               +D  +S   FV +L+  Q Q    MLS   S +AKV
Sbjct: 299 --DRSDQSNSFGGFVQNLNSNQYQQLMSMLSTHLSNSAKV 324

BLAST of CcUC09G176710 vs. ExPASy TrEMBL
Match: A0A5J5A1K4 (Retrotrans_gag domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_010359 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 36/101 (35.64%), Postives = 49/101 (48.51%), Query Frame = 0

Query: 7   RTKSICTYCCISAHVVDKCYKLHGNSPGYKFRQWNNSCGVHSPRVVDFHNSENDLENLAS 66
           R K  CT+C I  H VD+CYK+HG  PGYKFR  NN           F+ + + +    S
Sbjct: 228 RDKPYCTHCKIRGHTVDRCYKIHGYPPGYKFRSNNN-----------FNAAAHQVS--TS 287

Query: 67  AAMADGKSSTESFVSSLSQGQCQNQTLMLSGRQSAAKVYTD 108
               D  +S   FV +L+  Q Q    MLS   S++   T+
Sbjct: 288 DDRLDQSNSFGGFVQNLNSNQYQQLMSMLSTHLSSSTKVTN 315

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA8536734.18.4e-0637.62hypothetical protein F0562_029212 [Nyssa sinensis][more]
XP_022145891.11.1e-0537.04uncharacterized protein LOC111015239 [Momordica charantia][more]
XP_022856063.19.3e-0536.45uncharacterized protein LOC111377235, partial [Olea europaea var. sylvestris][more]
XP_022158788.11.6e-0433.98uncharacterized protein LOC111025254 [Momordica charantia][more]
XP_022878639.12.1e-0448.33uncharacterized protein LOC111396434 [Olea europaea var. sylvestris][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5J5B2C54.1e-0637.62Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_029212 PE=4 SV=1[more]
A0A6J1CXR25.3e-0637.04uncharacterized protein LOC111015239 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1DX327.7e-0533.98uncharacterized protein LOC111025254 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5J4ZHF91.3e-0438.00Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_017116 PE=4 SV=1[more]
A0A5J5A1K42.9e-0435.64Retrotrans_gag domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_01... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G176710.1CcUC09G176710.1mRNA