CcUC09G175770 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G175770
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA-directed RNA polymerase II subunit RPB2
Location	CicolChr09: 14670079 .. 14670342 (-)
RNA-Seq Expression	CcUC09G175770
Synteny	CcUC09G175770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAATCCTTCACTCTGATTCAGACAATTGCGACTGCTGGAGCCTTCTCTGCGATTTCATTCTGGTGCGGTTTTACTTCTCTTCCTTCAACTTTCTTCTCCGGATATTCCTTACCTATTCATCTTCCTCCATTTTTTCTTAGGTACGGTTTCATGTTTGGAAGAGAGTCCGCTCGAAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGAGGAACCTCAAACTCCGACTCTTCTTCTTCTGAAACTCCTCAGTCTTGA

mRNA sequence

ATGGAGAAATCCTTCACTCTGATTCAGACAATTGCGACTGCTGGAGCCTTCTCTGCGATTTCATTCTGGTACGGTTTCATGTTTGGAAGAGAGTCCGCTCGAAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGAGGAACCTCAAACTCCGACTCTTCTTCTTCTGAAACTCCTCAGTCTTGA

Coding sequence (CDS)

ATGGAGAAATCCTTCACTCTGATTCAGACAATTGCGACTGCTGGAGCCTTCTCTGCGATTTCATTCTGGTACGGTTTCATGTTTGGAAGAGAGTCCGCTCGAAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGAGGAACCTCAAACTCCGACTCTTCTTCTTCTGAAACTCCTCAGTCTTGA

Protein sequence

MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSETPQS

Homology

[Close]

BLAST of CcUC09G175770 vs. NCBI nr
Match: XP_038888236.1 (uncharacterized protein LOC120078095 [Benincasa hispida] >XP_038888237.1 uncharacterized protein LOC120078095 [Benincasa hispida])

HSP 1 Score: 109.8 bits (273), Expect = 8.6e-21
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSD--SSSSET 60
          MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI DLRRGTSNSD  SSSSET
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLILDLRRGTSNSDSSSSSSET 60

[Close]

BLAST of CcUC09G175770 vs. NCBI nr
Match: XP_023553989.1 (uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106.3 bits (264), Expect = 9.5e-20
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSETPQ 60
          MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+S+SDSSS+ TPQ
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSDSDSSSA-TPQ 59

[Close]

BLAST of CcUC09G175770 vs. NCBI nr
Match: XP_016903560.1 (PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo] >KAA0038521.1 putative membrane lipoprotein [Cucumis melo var. makuwa] >TYK31115.1 putative membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 57/61 (93.44%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSETPQ 60
          M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S SD SSSETPQ
Sbjct: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSD-SSSETPQ 60

Query: 61 S 62
          S
Sbjct: 61 S 60

[Close]

BLAST of CcUC09G175770 vs. NCBI nr
Match: XP_022156252.1 (uncharacterized protein LOC111023182 [Momordica charantia] >XP_022156260.1 uncharacterized protein LOC111023182 [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSS 55
          MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SNSDSS
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNSDSS 54

[Close]

BLAST of CcUC09G175770 vs. NCBI nr
Match: XP_022973256.1 (uncharacterized protein LOC111471813 [Cucurbita maxima] >KAG7011478.1 hypothetical protein SDJN02_26384 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.0 bits (258), Expect = 4.7e-19
Identity = 55/60 (91.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSETPQ 60
          MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SN   SSS TPQ
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSN--DSSSATPQ 58

[Close]

BLAST of CcUC09G175770 vs. ExPASy TrEMBL
Match: A0A5A7TAA3 (Putative membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003920 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.0e-20
Identity = 57/61 (93.44%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSETPQ 60
          M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S SD SSSETPQ
Sbjct: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSD-SSSETPQ 60

Query: 61 S 62
          S
Sbjct: 61 S 60

[Close]

BLAST of CcUC09G175770 vs. ExPASy TrEMBL
Match: A0A1S4E6G4 (uncharacterized protein LOC103503490 OS=Cucumis melo OX=3656 GN=LOC103503490 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.0e-20
Identity = 57/61 (93.44%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSETPQ 60
          M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S SD SSSETPQ
Sbjct: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSD-SSSETPQ 60

Query: 61 S 62
          S
Sbjct: 61 S 60

[Close]

BLAST of CcUC09G175770 vs. ExPASy TrEMBL
Match: A0A6J1DRK3 (uncharacterized protein LOC111023182 OS=Momordica charantia OX=3673 GN=LOC111023182 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.8e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSS 55
          MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SNSDSS
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNSDSS 54

[Close]

BLAST of CcUC09G175770 vs. ExPASy TrEMBL
Match: A0A6J1I859 (uncharacterized protein LOC111471813 OS=Cucurbita maxima OX=3661 GN=LOC111471813 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.3e-19
Identity = 55/60 (91.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSETPQ 60
          MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SN   SSS TPQ
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSN--DSSSATPQ 58

[Close]

BLAST of CcUC09G175770 vs. ExPASy TrEMBL
Match: A0A6J1F0E3 (uncharacterized protein LOC111438056 OS=Cucurbita moschata OX=3662 GN=LOC111438056 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-18
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSS 57
          MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SN  SS++
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSAN 56

[Close]

BLAST of CcUC09G175770 vs. TAIR 10
Match: AT4G17085.1 (Putative membrane lipoprotein )

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-17
Identity = 40/54 (74.07%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSS 55
          M+KSF+LIQT+A +G FSA+S WYGFMFGRESARK+LG LI++LRRG SNSDS+
Sbjct: 1  MQKSFSLIQTVAISGVFSAVSCWYGFMFGRESARKELGGLIEELRRGGSNSDST 54

The following BLAST results are available for this feature:

BLAST of CcUC09G175770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888236.1	8.6e-21	95.16	uncharacterized protein LOC120078095 [Benincasa hispida] >XP_038888237.1 unchara...	[more]
XP_023553989.1	9.5e-20	93.33	uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo]	[more]
XP_016903560.1	1.2e-19	93.44	PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo] >KAA0038521.1 put...	[more]
XP_022156252.1	1.6e-19	98.15	uncharacterized protein LOC111023182 [Momordica charantia] >XP_022156260.1 uncha...	[more]
XP_022973256.1	4.7e-19	91.67	uncharacterized protein LOC111471813 [Cucurbita maxima] >KAG7011478.1 hypothetic...	[more]

BLAST of CcUC09G175770 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC09G175770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TAA3	6.0e-20	93.44	Putative membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S4E6G4	6.0e-20	93.44	uncharacterized protein LOC103503490 OS=Cucumis melo OX=3656 GN=LOC103503490 PE=...	[more]
A0A6J1DRK3	7.8e-20	98.15	uncharacterized protein LOC111023182 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1I859	2.3e-19	91.67	uncharacterized protein LOC111471813 OS=Cucurbita maxima OX=3661 GN=LOC111471813...	[more]
A0A6J1F0E3	1.1e-18	91.07	uncharacterized protein LOC111438056 OS=Cucurbita moschata OX=3662 GN=LOC1114380...	[more]

BLAST of CcUC09G175770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17085.1	2.8e-17	74.07	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38384	MEMBRANE LIPOPROTEIN-RELATED	coord: 1..57
None	No IPR available	PANTHER	PTHR38384:SF2	MEMBRANE LIPOPROTEIN-RELATED	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G175770.1	CcUC09G175770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032774	RNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity