CcUC09G175190 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G175190
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTransducin/WD40 repeat-like superfamily protein
LocationCicolChr09: 12554788 .. 12557365 (+)
RNA-Seq ExpressionCcUC09G175190
SyntenyCcUC09G175190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATCCCCTGTGTTTACCGTAGATGGCCCCATAGCATTCCTAACGGTGGAAGAAGTAATTTAGGAAAAAAAATGAAATGAATTTTCTATTATATTTGTAGTTGTTAAGACTTGTTAGTACTCAACTAATCATTCAAAATAATAAGTCAATCTTACAAAAAAAAAAAAATATATATATATATATATATATAAGTAGACAATAACCACGATGGAAAATGTGAAACCACTCAAACGGCAACTTGGAATAGCCACGACAGGCCAAACATTCCTTATTAAGCATAGCAACAAGGGAAGGGAGGTAGAGTCTGATAGAATGTGAATTGAAGATAGCCCCAATTTTAAAGCTAAGTTCAAGCCTTCCTTCCCACACCACCACAGCTTCAGCCCCACAAGCAGAGTAAGATCCTCTAATATCCTTACAAAACCCAGACAACATTCGAAAACAACTCAATGGCATAAGTTGGTATAGTTCGAGCTACACTTTTAATCAAAACATCCTTACCATCCATACAGAAAAAACTCTCCCTTCCAACCTTAAACAGTTTTTCCAGACACGTTCTTGAGTATGCCTGAAATCAGAACTTTTACTACAAGAAACCAAAGAAGACATCCCCAGGTACAATCCAAAAGCATCAACCATACCAACTTCAAACATCCTCTGGAGGTAAGAGTGACAATCTGAGCTAACATTGGCCAAGAAAAAACAAACTTAATTTACATACTTCAAAGTTCAAGGTATCAAATCCTGCAACGAATGCCTTAAGGAAATTAAGGCTATCATCGACCTCCCTAAGTCCTTGGTGGGACTAAACTCCGTCATAGGCTGATGGTTATAAATAAGATAATTAGATGTAAAATCACCAAAGATTTTATTTTATTCTCATTGTAATTATTTCTCTTTATGTATTTTGCCTTTCTCCTATATAAGAAGGCTACGTATCTTAAAGATTAATTTATTGGAATACAAAAATATTTTACTTCATTCAAACCTTCCTAGACTGACCATTTATAAGGATCGAAAATGATGTAGTGACACAGTCTACTATTAGATCAACCCAATTTTGGTGGAAACCCATCGCACACATGATCTGGTATAAGAATGACCCTTCGACTCTATCATAACCTCTACTCATATCCAAATTAATAGCTGAATACCCCCTTTTCCGTTTTCACTTCATTCTAAAAAAATGCAAACACTCATGACTAACATTATCCAATATGGAACGGCCAGCAACAAAGGCAGTCTGGGACAAAAAAAAACTTATATCATTAAGAAACGAATGCAACCAATTAACCAACACTTTAGTTACCAACTTGTACAAAACGTTACACAGGCTAATCGGTCTATGGTTAGTCACAAGTTTAGGCTGAGAAACCTTAGGAATAAGAACAATATGTGTGTTGTTCTAATCTTGGATGGACGTATGCCCGTTAAGAATATTAAGACAACAATCAATAGTTATCTCACCAATAATGTCCCGATATTTCTCAAAAAAGACAGCAGCGAGACATTCCAGCCTCGGAGCCTTTGTAGAATGGAATTGTTTCATAGCCTTGATAACCTCATCTCGATCAAAAGGGCACCACAATTGAGCATTCATCAACTTCGTAATTGTTCTAGGGACAAACTCTAGAACTTGACTCATCTGAACAGCACCCATTCCAGAAGATCTAAACAAATCCTGAAAATAATGCGTAAAAATAGACATGATTGTATCTACATCCTCCTGCCACACCCCCACCTAATCAGCAACACCAATAATGGAACCATAGCGTGTTCCGATCACCCCACTGCAATAGCTTTTAAAAGGATCTTTGCTTCCAATAAATTTCCTGAGTGAAAATAGGAGACTTGCCCTTCTTTAACTAAAAAATACAGTCATTCAAAGTGGCTGGTGCAACATATTTCTAGCAGACATAGCTCTAGCAATTGTCTATCGATGAAGGTAGGAAAGGAGAGGACCAAAAAAATACCAACAATTTAATGAGTTAAGTTTTACTTCTTGTCGTACCCAACTCAAATCAGACAGGTATAACTAATATGCATTCAGACACATAAAGAACAAGAAGTTCCAAAAGAATTGTTTAATTAACCTAAACTAGATCTGGTGATTTCGTATAGCAAGAAGCATGCTGCGTTAGCTGGGACACTACGTGCCATGGCTGGTCCAAAACCTTTGTATAGGCCTTTAACTCCTTCTAAGGCCATGATTTTTCTAAAAGCATCAATAGAACCAGAGAATTTTGGGTTCTTGAAATCATCCACTTGAATCACACTCTTTATCACATCAGTTGGATACACAGCTAGCCAGAAGGCAGCTCCGGAGACACCACCAGCCACTATCAAAGACCCTCTTCCTAGATTAGAAGTGTCTCGTCCTCCTGCAAAGTGCTGTTTTAGCAATTCATATACACCAAAAACCACTGCATTTCCAGGCACCTCTCTTGCCAAAGTTGGAACCAAACCCTTGAAAAGACCCTTCACTCCATGCGATTTGAGAACATGCTTAGCTACATCCATTGGGCCACCATACTTCACTGCCACACCAACTGAACTGGATGTTGCCAATGCACTCTGA

mRNA sequence

TTATCCCCTGTGTTTACCGTAGATGGCCCCATAGCATTCCTAACGGTGGAAGAAACAATAACCACGATGGAAAATGTGAAACCACTCAAACGGCAACTTGGAATAGCCACGACAGGCCAAACATTCCTTATTAAGCATAGCAACAAGGGAAGGGAGAACTTTTACTACAAGAAACCAAAGAAGACATCCCCAGGTACAATCCAAAAGCATCAACCATACCAACTTCAAACATCCTCTGGAGTTGGATACACAGCTAGCCAGAAGGCAGCTCCGGAGACACCACCAGCCACTATCAAAGACCCTCTTCCTAGATTAGAAGTGTCTCGTCCTCCTGCAAAGTGCTGTTTTAGCAATTCATATACACCAAAAACCACTGCATTTCCAGGCACCTCTCTTGCCAAAGTTGGAACCAAACCCTTGAAAAGACCCTTCACTCCATGCGATTTGAGAACATGCTTAGCTACATCCATTGGGCCACCATACTTCACTGCCACACCAACTGAACTGGATGTTGCCAATGCACTCTGA

Coding sequence (CDS)

TTATCCCCTGTGTTTACCGTAGATGGCCCCATAGCATTCCTAACGGTGGAAGAAACAATAACCACGATGGAAAATGTGAAACCACTCAAACGGCAACTTGGAATAGCCACGACAGGCCAAACATTCCTTATTAAGCATAGCAACAAGGGAAGGGAGAACTTTTACTACAAGAAACCAAAGAAGACATCCCCAGGTACAATCCAAAAGCATCAACCATACCAACTTCAAACATCCTCTGGAGTTGGATACACAGCTAGCCAGAAGGCAGCTCCGGAGACACCACCAGCCACTATCAAAGACCCTCTTCCTAGATTAGAAGTGTCTCGTCCTCCTGCAAAGTGCTGTTTTAGCAATTCATATACACCAAAAACCACTGCATTTCCAGGCACCTCTCTTGCCAAAGTTGGAACCAAACCCTTGAAAAGACCCTTCACTCCATGCGATTTGAGAACATGCTTAGCTACATCCATTGGGCCACCATACTTCACTGCCACACCAACTGAACTGGATGTTGCCAATGCACTCTGA

Protein sequence

LSPVFTVDGPIAFLTVEETITTMENVKPLKRQLGIATTGQTFLIKHSNKGRENFYYKKPKKTSPGTIQKHQPYQLQTSSGVGYTASQKAAPETPPATIKDPLPRLEVSRPPAKCCFSNSYTPKTTAFPGTSLAKVGTKPLKRPFTPCDLRTCLATSIGPPYFTATPTELDVANAL
Homology
[Close]
BLAST of CcUC09G175190 vs. NCBI nr
Match: GER47093.1 (transducin/WD40 repeat-like superfamily protein [Striga asiatica])

HSP 1 Score: 106.3 bits (264), Expect = 2.7e-19
Identity = 63/107 (58.88%), Postives = 70/107 (65.42%), Query Frame = 0 

Query: 70  HQPYQLQTSSGVGYTASQKAAPETPPATIKDPLPRLEVSRPPAKCCFSNSYTPKTTAFPG 129
           HQP Q +TS      A+QKAAP  PPA I +P PR EV  PPA+ CF  SY P  TAFPG
Sbjct: 2   HQPTQ-KTS------AAQKAAPARPPAKINEPWPRPEVFGPPARYCFKASYVPNKTAFPG 61

Query: 130 TSLAKVGTKPLKRPF-TPCDLRTCLATSIGPPYFTATPTELDVANAL 176
           TS A VGT PLKRP   P D RTC ATS+GPPYF  T    +VA+AL
Sbjct: 62  TSRASVGTMPLKRPLDPPSDWRTCRATSMGPPYFMVTVAGPEVASAL 101

[Close]
BLAST of CcUC09G175190 vs. ExPASy TrEMBL
Match: A0A5A7QP23 (Transducin/WD40 repeat-like superfamily protein OS=Striga asiatica OX=4170 GN=STAS_24158 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 63/107 (58.88%), Postives = 70/107 (65.42%), Query Frame = 0 

Query: 70  HQPYQLQTSSGVGYTASQKAAPETPPATIKDPLPRLEVSRPPAKCCFSNSYTPKTTAFPG 129
           HQP Q +TS      A+QKAAP  PPA I +P PR EV  PPA+ CF  SY P  TAFPG
Sbjct: 2   HQPTQ-KTS------AAQKAAPARPPAKINEPWPRPEVFGPPARYCFKASYVPNKTAFPG 61

Query: 130 TSLAKVGTKPLKRPF-TPCDLRTCLATSIGPPYFTATPTELDVANAL 176
           TS A VGT PLKRP   P D RTC ATS+GPPYF  T    +VA+AL
Sbjct: 62  TSRASVGTMPLKRPLDPPSDWRTCRATSMGPPYFMVTVAGPEVASAL 101

[Close]
BLAST of CcUC09G175190 vs. ExPASy TrEMBL
Match: A0A7C9DQI6 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-18
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 0 

Query: 98  IKDPLPRLEVSRPPAKCCFSNSYTPKTTAFPGTSLAKVGTKPLKRPFTPCDLRTCLATSI 157
           I++PLP+LEVS PPAK C + SYTP   A PGTS A+VGTKPLKRP TP    TCLATSI
Sbjct: 2   IREPLPKLEVSLPPAKYCLTASYTPNMAALPGTSRARVGTKPLKRPLTPASEITCLATSI 61

Query: 158 GPPYFTATPTELDVANAL 176
           GPPYFTAT      A AL
Sbjct: 62  GPPYFTATVAVPAPAKAL 79

[Close]
BLAST of CcUC09G175190 vs. ExPASy TrEMBL
Match: A0A0A9SYF1 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-08
Identity = 37/61 (60.66%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 115 CFSNSYTPKTTAFPGTSLAKVGTKPLKRP-FTPCDLRTCLATSIGPPYFTATPTELDVAN 174
           C   SYTP   A PGTS A+VG +PLK P   P D  TCLATSIGPPYFTAT     VA 
Sbjct: 3   CLIASYTPNMMALPGTSRARVGERPLKSPRVPPSDFSTCLATSIGPPYFTATAGAATVAA 62

[Close]
BLAST of CcUC09G175190 vs. ExPASy TrEMBL
Match: A0A0A9HS20 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 31/50 (62.00%), Postives = 32/50 (64.00%), Query Frame = 0 

Query: 126 AFPGTSLAKVGTKPLKRP-FTPCDLRTCLATSIGPPYFTATPTELDVANA 175
           A PGTS A VG +PLK P   P DL TCLATSIGPPYF A      VA A
Sbjct: 3   ALPGTSRAMVGKRPLKSPRVPPSDLSTCLATSIGPPYFAAAAGAATVAAA 52

The following BLAST results are available for this feature:
BLAST of CcUC09G175190 vs. NCBI nr
Match NameE-valueIdentityDescription
GER47093.12.7e-1958.88transducin/WD40 repeat-like superfamily protein [Striga asiatica][more]
BLAST of CcUC09G175190 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC09G175190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7QP231.3e-1958.88Transducin/WD40 repeat-like superfamily protein OS=Striga asiatica OX=4170 GN=ST... [more]
A0A7C9DQI61.9e-1866.67Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A0A9SYF11.8e-0860.66Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9HS201.6e-0462.00Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of CcUC09G175190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G175190.1CcUC09G175190.1mRNA