CcUC09G173870 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G173870
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionU6 snRNA phosphodiesterase
LocationCicolChr09: 10350908 .. 10353737 (-)
RNA-Seq ExpressionCcUC09G173870
SyntenyCcUC09G173870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTCGTTGCTGCCATTTACAGAGCAGAGAATGGATGCTCTAAGGGCTTCGTATGGCGGAAGCTCGTCGGATGAAGAAGCAGATACAGTTTCCCTTTCATCAGCATCATTATCAACTTTAGCTTTAACTTCAACTTCAACGCGACAACTCTCCGATGAGACACTGAACTTTTCACCTCTGCCTCCGCCACCTCTCTCACTTCTCCATTTTCCAACTTCCACCTGTAACGCTCTTCTTCCTCCTTACATCTGCATTCTTTATCTTTTACTTTGTAGCGTTTCTCATTAACTCTTTCACTATTTCTTGTTTAGCTTTTTTGGATGATTTACCAATCGATCAGGCAACTAGGGTCCGAAGCTTCCCTCACGTTCAAGGAAACTATGCCCTACACCTCTATATCCCAGGTCATTCCCATATATCCTTTTTCAATTGCATTCTTGATTTATGAGTTACCCTGGTATGTGAAAGCTATGTAGTTCATCTAATTTGATTCTTAATCCTACTTTTCCTATTTCCATTTTGATTCACCTAATGGGGCTTCTTTGTTTTGTTATATATTTGGAAATACTTGTTTGTTGGAACAACTATGATTCTGTTTATAGAGAGCTCTTCTTTGGTTGACCACTAATTCATTATTAACAAACAAGTTGATTGTTAGAGTCCAGATTGGAATCAATGTCTAAAAATAATTAATCATAATTCATAAACCTTGTTTTGTTTGGCTACTCGTACAACGTTGTCTTCTTGAAATATATGTTGATTTCATTTTGGTTTGTGTCTCTCAACCCCTTAGCCTGCTATTTTGCCTCTTAAACATGATTAGTAATACTTATCACTTGCTTGCATTTCATTACATCTATAATTTTGCCTTTTATTGTGCTTATGGAATTCTAGAATATCATGACGGAACCAACGAAGAAAATCAATAATATCTATGATAATGTTTCAACAACACCTACAAATGTCAGAACATGGCTACTTTTATACTGTTGGGTTTTTGACTCTTGAATTGGAACTTTCTCTAAGCTTCTTTCGTCAATTCACTATATTTCATGGTCAATGCATCTACAATCTTCTAAATGTTCATACTTGATGAGGAAAAGCAGTCAAAGTAGATATGACTTATTTAAAAGAAATATAATTTCTTTTTTGGTATATAAGTTTGTAGATTTCTCTATTAATTTATAATCAAAACATTAACAGAGATTCTGAACATCTACAAATTAAACACTCTCAAATACATGGTTCTAAATAGTTGTTGAGATTTTTTCATTTTATCTATGTAATACGACTTTTCACATTGTTTTTTTATTTTGAACATGTATAAATATTTGTTTCATGTTCCCAGTGTACGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAGTTTCCTCACTTGTTCCTGCTCTTCATCTTGTTGATATTGACATTCCTTTGGACTTTTATGTAACGATGACCACAGGATTGAGCAAGCATTGGCTAGAGAATTTCACATAAGTTTGTCAAGAACAGTGCCAATCCGAGTACACCAAATTGACTAGATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAACGACGGTAAGTTAAGACTCTCCATTTAGTTTCATTAGTAATTTCCAACTTGCTTTTGTTTTTTACTTGATTTTTTTTTTCTTTTTTTAACAGTTATTGGATTGATTTTAGTAAATGGGAGACTTTTATTAATGATGATCTGTCTCGAACCTTTTTGTCAATGGAAATTATTGCTGGAGGGCTAATGGAGGTGCGTCACATTTGAGGGATTTCCGTTTCCCTTATCTTTGCATTTTTGGCGTAAATGTGCTTTTCTTCATTCTCAATTTTTGGGCCAATAATATGGGAGCTTCCGCTCCTGCTAAAGTCTCTTTTTCAGCTTATATTAGTTTCTATTAGATTACATAGTACGACTAGTTCAAAAACTCACGGAATCAGGTTAGATTATAGTTAACCCTTGAGTTTGATTTATGCATCTAGTGCATCGATCAAAAGTTTTGAATTAGATTACTAGATGATTATTTTTATGTAGAATCTTGTAGGATGAGGCAATTTTTCTCTTGAATTTGATGAGTTTGGCCGAAATTAGATTACAAATCCATACACATGTATGCATGTATGTTCATTGATGTGTTTTGCATTCATATTATATTGGAAAATTAGGATTAAGTTGCCTACACATCATGCGACAATAATTTGTTGAACACAGTTGGTATCGTTGTTCTTTCTGACACTCTCTCATGTGATGTTTTGAAATTACAAGTTGTTTATAATTGTAACTCAAGAACAAACTTGTTTGCTAGGCCATCGTTGTTTGAGACCTTTTGACATACGTTATGATGGTTTCATAAGTTTTACCTGGTTCAGATTGGCAATATTACATGGATGAAAGAGTTGTGCCTTTGTTTCCAATTTGTTGCAGATCAGAAAACAAATCCAAATTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGTTTGTTGCATTAACTATTTTTTTTTTGCCTTCATCTAATTTAGCATAATATGGAAGAAGATGACCTTCTAGACTCTATTTTTTGTAGGACGCAAGACCACATATATCTTTTGCATGGGCATTAGGTGACCTTAGTAAATTATTGACTCAAGCAGTTCATAATGAAATGAAAAAGTCTGCAATTAAGGAAACATTGAAGAGAGGTATTTTCACCACCAAATTCAACGGCATCGAATGTAAGATTGGTAAAAAAATGTATAAAATATGTAAATTTCCCGATGAATGAAAAGATTTCCCGATGAATTTGTATACGTG

mRNA sequence

CGTCGTTGCTGCCATTTACAGAGCAGAGAATGGATGCTCTAAGGGCTTCGTATGGCGGAAGCTCGTCGGATGAAGAAGCAGATACAGTTTCCCTTTCATCAGCATCATTATCAACTTTAGCTTTAACTTCAACTTCAACGCGACAACTCTCCGATGAGACACTGAACTTTTCACCTCTGCCTCCGCCACCTCTCTCACTTCTCCATTTTCCAACTTCCACCTCTTTTTTGGATGATTTACCAATCGATCAGGCAACTAGGGTCCGAAGCTTCCCTCACGTTCAAGGAAACTATGCCCTACACCTCTATATCCCAGTGTACGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAGTTTCCTCACTTGTTCCTGCTCTTCATCTTGTTGATATTGACATTCCTTTGGACTTTTATGTAACGATGACCACAGGATTGAGCAAGCATTGGCTAGAGAATTTCACATAAGTTTGTCAAGAACAGTGCCAATCCGAGTACACCAAATTGACTAGATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAACGACGTTATTGGATTGATTTTAGTAAATGGGAGACTTTTATTAATGATGATCTGTCTCGAACCTTTTTGTCAATGGAAATTATTGCTGGAGGGCTAATGGAGATCAGAAAACAAATCCAAATTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGACGCAAGACCACATATATCTTTTGCATGGGCATTAGGTGACCTTAGTAAATTATTGACTCAAGCAGTTCATAATGAAATGAAAAAGTCTGCAATTAAGGAAACATTGAAGAGAGGTATTTTCACCACCAAATTCAACGGCATCGAATGTAAGATTGGTAAAAAAATGTATAAAATATGTAAATTTCCCGATGAATGAAAAGATTTCCCGATGAATTTGTATACGTG

Coding sequence (CDS)

ATGCTTCGCCAGAAGCTTCAGTCTCAACGACGTTATTGGATTGATTTTAGTAAATGGGAGACTTTTATTAATGATGATCTGTCTCGAACCTTTTTGTCAATGGAAATTATTGCTGGAGGGCTAATGGAGATCAGAAAACAAATCCAAATTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGACGCAAGACCACATATATCTTTTGCATGGGCATTAGGTGACCTTAGTAAATTATTGACTCAAGCAGTTCATAATGAAATGAAAAAGTCTGCAATTAAGGAAACATTGAAGAGAGGTATTTTCACCACCAAATTCAACGGCATCGAATGTAAGATTGGTAAAAAAATGTATAAAATATGTAAATTTCCCGATGAATGA

Protein sequence

MLRQKLQSQRRYWIDFSKWETFINDDLSRTFLSMEIIAGGLMEIRKQIQIVNEVYKLHNLPEFYKDARPHISFAWALGDLSKLLTQAVHNEMKKSAIKETLKRGIFTTKFNGIECKIGKKMYKICKFPDE
Homology
[Close]
BLAST of CcUC09G173870 vs. NCBI nr
Match: XP_038875354.1 (U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida])

HSP 1 Score: 247.3 bits (630), Expect = 7.3e-62
Identity = 117/130 (90.00%), Postives = 124/130 (95.38%), Query Frame = 0 

Query: 1   MLRQKLQSQRRYWIDFSKWETFINDDLSRTFLSMEIIAGGLMEIRKQIQIVNEVYKLHNL 60
           MLRQKLQSQRRYWIDFSKWETF+NDDLSRTFLSMEII GGLMEIRKQIQIVNEVYKLHNL
Sbjct: 162 MLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRKQIQIVNEVYKLHNL 221

Query: 61  PEFYKDARPHISFAWALGDLSKLLTQAVHNEMKKSAIKETLKRGIFTTKFNGIECKIGKK 120
           PEFYK+ARPHIS AWA+GDLSKLL+QAVHNEMK SA+ +TLKR IFTTKF GIECKIGKK
Sbjct: 222 PEFYKEARPHISLAWAIGDLSKLLSQAVHNEMKSSAVMQTLKRCIFTTKFKGIECKIGKK 281

Query: 121 MYKICKFPDE 131
           +YKICKFPDE
Sbjct: 282 IYKICKFPDE 291

[Close]
BLAST of CcUC09G173870 vs. NCBI nr
Match: XP_022969741.1 (U6 snRNA phosphodiesterase [Cucurbita maxima])

HSP 1 Score: 243.8 bits (621), Expect = 8.1e-61
Identity = 115/130 (88.46%), Postives = 124/130 (95.38%), Query Frame = 0 

Query: 1   MLRQKLQSQRRYWIDFSKWETFINDDLSRTFLSMEIIAGGLMEIRKQIQIVNEVYKLHNL 60
           MLRQKLQSQRRYWIDFSKWETF+NDDLSRTFLSMEIIAGGLMEIRK+IQ+VNEVYKLHNL
Sbjct: 168 MLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKRIQVVNEVYKLHNL 227

Query: 61  PEFYKDARPHISFAWALGDLSKLLTQAVHNEMKKSAIKETLKRGIFTTKFNGIECKIGKK 120
           PEFYK+ARPHIS AWALGDLSKLL+Q+VH+EMKKS +KE  KR IFT KFNGIECKIGKK
Sbjct: 228 PEFYKEARPHISLAWALGDLSKLLSQSVHDEMKKSMVKEKSKRCIFTAKFNGIECKIGKK 287

Query: 121 MYKICKFPDE 131
           M+KICKFPDE
Sbjct: 288 MFKICKFPDE 297

[Close]
BLAST of CcUC09G173870 vs. NCBI nr
Match: XP_004143673.1 (U6 snRNA phosphodiesterase [Cucumis sativus] >KGN50332.1 hypothetical protein Csa_000253 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60
Identity = 114/130 (87.69%), Postives = 123/130 (94.62%), Query Frame = 0 

Query: 1   MLRQKLQSQRRYWIDFSKWETFINDDLSRTFLSMEIIAGGLMEIRKQIQIVNEVYKLHNL 60
           MLRQKLQS RRYWIDFSKWETF+NDDLSRTFLSMEII GGLMEIRKQIQ+VNEVYKLHNL
Sbjct: 160 MLRQKLQSPRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNL 219

Query: 61  PEFYKDARPHISFAWALGDLSKLLTQAVHNEMKKSAIKETLKRGIFTTKFNGIECKIGKK 120
           PEFYK+ARPHIS AWALGD+S+L +QAVHNE+K+SA+KE  KR IFTTKFNGIECKIGKK
Sbjct: 220 PEFYKEARPHISVAWALGDVSQLSSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKK 279

Query: 121 MYKICKFPDE 131
           MYKICKFPDE
Sbjct: 280 MYKICKFPDE 289

[Close]
BLAST of CcUC09G173870 vs. NCBI nr
Match: XP_022928923.1 (U6 snRNA phosphodiesterase [Cucurbita moschata])

HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60
Identity = 114/130 (87.69%), Postives = 122/130 (93.85%), Query Frame = 0 

Query: 1   MLRQKLQSQRRYWIDFSKWETFINDDLSRTFLSMEIIAGGLMEIRKQIQIVNEVYKLHNL 60
           MLRQKLQSQRRYWIDFSKWETF+NDDLSRTFLSMEIIAGGLMEIRK IQ+VNEVYKLHNL
Sbjct: 162 MLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKHIQVVNEVYKLHNL 221

Query: 61  PEFYKDARPHISFAWALGDLSKLLTQAVHNEMKKSAIKETLKRGIFTTKFNGIECKIGKK 120
           PEFYK+ RPHIS AWALGDLSKLL+Q+VH+EMKKS +KE  KR IFT KFNGIECKIGKK
Sbjct: 222 PEFYKEGRPHISLAWALGDLSKLLSQSVHDEMKKSMVKEKSKRSIFTAKFNGIECKIGKK 281

Query: 121 MYKICKFPDE 131
           M+KICKFPDE
Sbjct: 282 MFKICKFPDE 291

[Close]
BLAST of CcUC09G173870 vs. NCBI nr
Match: XP_023549871.1 (U6 snRNA phosphodiesterase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.9 bits (616), Expect = 3.1e-60
Identity = 114/130 (87.69%), Postives = 122/130 (93.85%), Query Frame = 0 

Query: 1   MLRQKLQSQRRYWIDFSKWETFINDDLSRTFLSMEIIAGGLMEIRKQIQIVNEVYKLHNL 60
           MLRQKLQSQRRYWIDFSKWETF+NDDLSRTFLSMEIIAGGLMEIRK IQ+VNEVYKLHNL
Sbjct: 164 MLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKHIQVVNEVYKLHNL 223

Query: 61  PEFYKDARPHISFAWALGDLSKLLTQAVHNEMKKSAIKETLKRGIFTTKFNGIECKIGKK 120
           PEFYK+ RPHIS AWALGDLSKLL+Q+VH+EMKKS +KE  KR IFT KFNGIECKIGKK
Sbjct: 224 PEFYKEGRPHISLAWALGDLSKLLSQSVHDEMKKSMVKEKSKRCIFTAKFNGIECKIGKK 283

Query: 121 MYKICKFPDE 131
           M+KICKFPDE
Sbjct: 284 MFKICKFPDE 293

[Close]
BLAST of CcUC09G173870 vs. ExPASy TrEMBL
Match: A0A6J1HYN3 (U6 snRNA phosphodiesterase OS=Cucurbita maxima OX=3661 GN=LOC111468846 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.9e-61
Identity = 115/130 (88.46%), Postives = 124/130 (95.38%), Query Frame = 0 

Query: 1   MLRQKLQSQRRYWIDFSKWETFINDDLSRTFLSMEIIAGGLMEIRKQIQIVNEVYKLHNL 60
           MLRQKLQSQRRYWIDFSKWETF+NDDLSRTFLSMEIIAGGLMEIRK+IQ+VNEVYKLHNL
Sbjct: 168 MLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKRIQVVNEVYKLHNL 227

Query: 61  PEFYKDARPHISFAWALGDLSKLLTQAVHNEMKKSAIKETLKRGIFTTKFNGIECKIGKK 120
           PEFYK+ARPHIS AWALGDLSKLL+Q+VH+EMKKS +KE  KR IFT KFNGIECKIGKK
Sbjct: 228 PEFYKEARPHISLAWALGDLSKLLSQSVHDEMKKSMVKEKSKRCIFTAKFNGIECKIGKK 287

Query: 121 MYKICKFPDE 131
           M+KICKFPDE
Sbjct: 288 MFKICKFPDE 297

[Close]
BLAST of CcUC09G173870 vs. ExPASy TrEMBL
Match: A0A0A0KPH5 (U6 snRNA phosphodiesterase OS=Cucumis sativus OX=3659 GN=Csa_5G167730 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.7e-61
Identity = 114/130 (87.69%), Postives = 123/130 (94.62%), Query Frame = 0 

Query: 1   MLRQKLQSQRRYWIDFSKWETFINDDLSRTFLSMEIIAGGLMEIRKQIQIVNEVYKLHNL 60
           MLRQKLQS RRYWIDFSKWETF+NDDLSRTFLSMEII GGLMEIRKQIQ+VNEVYKLHNL
Sbjct: 160 MLRQKLQSPRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNL 219

Query: 61  PEFYKDARPHISFAWALGDLSKLLTQAVHNEMKKSAIKETLKRGIFTTKFNGIECKIGKK 120
           PEFYK+ARPHIS AWALGD+S+L +QAVHNE+K+SA+KE  KR IFTTKFNGIECKIGKK
Sbjct: 220 PEFYKEARPHISVAWALGDVSQLSSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKK 279

Query: 121 MYKICKFPDE 131
           MYKICKFPDE
Sbjct: 280 MYKICKFPDE 289

[Close]
BLAST of CcUC09G173870 vs. ExPASy TrEMBL
Match: A0A6J1EQH7 (U6 snRNA phosphodiesterase OS=Cucurbita moschata OX=3662 GN=LOC111435686 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.7e-61
Identity = 114/130 (87.69%), Postives = 122/130 (93.85%), Query Frame = 0 

Query: 1   MLRQKLQSQRRYWIDFSKWETFINDDLSRTFLSMEIIAGGLMEIRKQIQIVNEVYKLHNL 60
           MLRQKLQSQRRYWIDFSKWETF+NDDLSRTFLSMEIIAGGLMEIRK IQ+VNEVYKLHNL
Sbjct: 162 MLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKHIQVVNEVYKLHNL 221

Query: 61  PEFYKDARPHISFAWALGDLSKLLTQAVHNEMKKSAIKETLKRGIFTTKFNGIECKIGKK 120
           PEFYK+ RPHIS AWALGDLSKLL+Q+VH+EMKKS +KE  KR IFT KFNGIECKIGKK
Sbjct: 222 PEFYKEGRPHISLAWALGDLSKLLSQSVHDEMKKSMVKEKSKRSIFTAKFNGIECKIGKK 281

Query: 121 MYKICKFPDE 131
           M+KICKFPDE
Sbjct: 282 MFKICKFPDE 291

[Close]
BLAST of CcUC09G173870 vs. ExPASy TrEMBL
Match: A0A1S3CTB0 (U6 snRNA phosphodiesterase OS=Cucumis melo OX=3656 GN=LOC103504707 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.4e-60
Identity = 112/130 (86.15%), Postives = 122/130 (93.85%), Query Frame = 0 

Query: 1   MLRQKLQSQRRYWIDFSKWETFINDDLSRTFLSMEIIAGGLMEIRKQIQIVNEVYKLHNL 60
           MLRQKLQS RRYWIDFSKWETF+NDDLSRTFLSMEII GGLMEIRKQIQ+VNEVYKLHNL
Sbjct: 160 MLRQKLQSPRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNL 219

Query: 61  PEFYKDARPHISFAWALGDLSKLLTQAVHNEMKKSAIKETLKRGIFTTKFNGIECKIGKK 120
           PEFYK+ARPHIS AWALGD+S++ +QAVHNE+K+SA+KE  KR IFTTKFNGIECKIGKK
Sbjct: 220 PEFYKEARPHISLAWALGDVSQISSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKK 279

Query: 121 MYKICKFPDE 131
           MYKICKF DE
Sbjct: 280 MYKICKFADE 289

[Close]
BLAST of CcUC09G173870 vs. ExPASy TrEMBL
Match: A0A6J1DNL4 (U6 snRNA phosphodiesterase OS=Momordica charantia OX=3673 GN=LOC111022878 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.7e-54
Identity = 106/130 (81.54%), Postives = 118/130 (90.77%), Query Frame = 0 

Query: 1   MLRQKLQSQRRYWIDFSKWETFINDDLSRTFLSMEIIAGGLMEIRKQIQIVNEVYKLHNL 60
           MLRQKLQ QRRYWIDFSKWETF+NDDLSRTFLSMEIIAGGLMEIRKQIQ+VNEVYK HNL
Sbjct: 154 MLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKFHNL 213

Query: 61  PEFYKDARPHISFAWALGDLSKLLTQAVHNEMKKSAIKETLKRGIFTTKFNGIECKIGKK 120
           PEFYK+ RPHIS AWALGDLSKLL++ V ++MK+S++  + KR IFTTKF+GIECKIGKK
Sbjct: 214 PEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPS-KRCIFTTKFSGIECKIGKK 273

Query: 121 MYKICKFPDE 131
            YKICK PDE
Sbjct: 274 TYKICKSPDE 282

[Close]
BLAST of CcUC09G173870 vs. TAIR 10
Match: AT5G51170.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-43
Identity = 84/130 (64.62%), Postives = 97/130 (74.62%), Query Frame = 0 

Query: 1   MLRQKLQSQRRYWIDFSKWETFINDDLSRTFLSMEIIAGGLMEIRKQIQIVNEVYKLHNL 60
           MLRQKLQ Q+RY IDF+KWE F+NDD +R+FLS+EI   GL EI KQI  VNEVYKLHNL
Sbjct: 156 MLRQKLQLQKRYLIDFNKWEVFVNDDHTRSFLSLEITTSGLSEISKQIDAVNEVYKLHNL 215

Query: 61  PEFYKDARPHISFAWALGDLSKLLTQAVHNEMKKSAIKETLKRGIFTTKFNGIECKIGKK 120
           PEFYKD RPHIS  WALGD+   L  AV  E++K      ++  IFT+KF GIECKIG K
Sbjct: 216 PEFYKDPRPHISLVWALGDIRTSLKGAVDVELRKLRAGGCVQNRIFTSKFCGIECKIGNK 275

Query: 121 MYKICKFPDE 131
            +KICK PDE
Sbjct: 276 THKICKLPDE 285

[Close]
BLAST of CcUC09G173870 vs. TAIR 10
Match: AT5G51170.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 166 Blast hits to 166 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 19; Plants - 35; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 1   MLRQKLQSQRRYWIDFSKWETFINDDLSRTFLSMEIIAGGLMEIRKQIQIV 52
           MLRQKLQ Q+RY IDF+KWE F+NDD +R+FLS+EI   GL E+  ++ ++
Sbjct: 156 MLRQKLQLQKRYLIDFNKWEVFVNDDHTRSFLSLEITTSGLSEVLSKLMLL 206

The following BLAST results are available for this feature:
BLAST of CcUC09G173870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038875354.17.3e-6290.00U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida][more]
XP_022969741.18.1e-6188.46U6 snRNA phosphodiesterase [Cucurbita maxima][more]
XP_004143673.11.4e-6087.69U6 snRNA phosphodiesterase [Cucumis sativus] >KGN50332.1 hypothetical protein Cs... [more]
XP_022928923.11.4e-6087.69U6 snRNA phosphodiesterase [Cucurbita moschata][more]
XP_023549871.13.1e-6087.69U6 snRNA phosphodiesterase [Cucurbita pepo subsp. pepo][more]
BLAST of CcUC09G173870 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC09G173870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HYN33.9e-6188.46U6 snRNA phosphodiesterase OS=Cucurbita maxima OX=3661 GN=LOC111468846 PE=3 SV=1[more]
A0A0A0KPH56.7e-6187.69U6 snRNA phosphodiesterase OS=Cucumis sativus OX=3659 GN=Csa_5G167730 PE=3 SV=1[more]
A0A6J1EQH76.7e-6187.69U6 snRNA phosphodiesterase OS=Cucurbita moschata OX=3662 GN=LOC111435686 PE=3 SV... [more]
A0A1S3CTB07.4e-6086.15U6 snRNA phosphodiesterase OS=Cucumis melo OX=3656 GN=LOC103504707 PE=3 SV=1[more]
A0A6J1DNL44.7e-5481.54U6 snRNA phosphodiesterase OS=Momordica charantia OX=3673 GN=LOC111022878 PE=3 S... [more]
BLAST of CcUC09G173870 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G51170.11.3e-4364.62unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0... [more]
AT5G51170.21.7e-1156.86unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027521U6 snRNA phosphodiesterase Usb1PFAMPF09749HVSLcoord: 2..125
e-value: 3.5E-30
score: 105.2
IPR027521U6 snRNA phosphodiesterase Usb1PANTHERPTHR13522UNCHARACTERIZEDcoord: 1..129
NoneNo IPR availableGENE3D3.90.1140.10Cyclic phosphodiesterasecoord: 1..125
e-value: 1.1E-30
score: 108.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G173870.1CcUC09G173870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0034477 U6 snRNA 3'-end processing
cellular_component GO:0005634 nucleus
molecular_function GO:1990838 poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends
molecular_function GO:0004518 nuclease activity