CcUC09G171590 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G171590
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Wound-induced basic protein
Location	CicolChr09: 8024646 .. 8027046 (+)
RNA-Seq Expression	CcUC09G171590
Synteny	CcUC09G171590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCGTATTCATTTGGGCCGGGTACCCGATGACCCGGCAGCCCCATATGGTTCTATAAATTTAAAGCCTCGTCAACAACTAGTCTCAACGTTTACGCTTGGACGCCTTCAGAAACTAAGAAGCGCACCAATTAGGGTTTCGTTTTGTTTTGTGAAAGCTCAATATTCATTATCGATAATGATCTACGACGTTAACTCACCTCTCTTCCGCTCCTTCCTCAGCCAGAAAGGAGGCCCTTCTGACAAAAGGTATTCTCTATCTTAACAATTTGTATGAATTATGTCTTGGACACATTTGAAGTTAGTAGGCTAGGATTTGAATGCATATATCTAATATTCTTTATCAAGTTTCATAGAGATTATTGTAACAATATTAGAACTTACCCGTTTGGGAGCTTAGCTATCGTTTTAGAAATTTGAAATTCTGTTAAACACTCCCTCTTAATTTGTAACTCAGAAGCTTCTTAAAATTGATTGAATTTGATATAATGGCATTTGCGAATATCATTTCTGTTGTGAAGTTTTTCACCAGATGTCCAACAAGGTGATAATTTAATTTAATATGTTTTAATCGAGTATGGAAGATTGGATTCTTGGTCATTGCAAATTTCGCACATATTGTTCCAAAAGCTTTTTTTGGGCTTTAGCTACTCCATTTAGAGATTGTTTAGAATCTTCTTTGGTCAAACAACTTCCCAATTAATTGTGGTTGTGCCTGTAAATTCTACCTTGGGTAAATGAAGTGGTTTTTTCTTTTTTTTTGGCTTGAACTTTTTTAGATATGAGGTTTGATCATAAGCGTACTTGTAGTTTGAAGTGCTTCTTTGATCATCAAGGACTTGCCCAATCATTGTTTGTATAGTCAACCTGCTTATCATCTCTTCCATTCTTGATGCTAACAACTATAACTGAGGATTTGATCTTTTATCATGCCATTTTTCCTTATCGTCTTGTTGATGTTGATGCTACTTCTGTTTCTTACTTTTTCTTTGCATTCCACCATTTTTTAGTTCTGATTCTTAGTATCAGCCTTGTTAAGCTTCTTTTTCTGTGTTATGTAGCTTGGAATGATAGACTTGCTTCATAAATTGAATTGGAAACTTAGTCATTCTTCTTCATGAGCTTCCCGTTAACTAAGATTATAATATCTCTGCGTGGGCGCAATGCAACCATGTAATGGAATTTTGAATATGAAGCTTATACACTTGAGGTATCTATGTCCAACACGTATGTGACACTTCAACGCATATTGAACATAATATTGTATATGTGTCAAACATTTGTTGAACATAATAGACATGTATTAAGGTGAACAATTGTAAGACATGTGTTACACACTCGTAAACATAAGGTGGACAATTGCTAGGCACTTGAATTTAAGTGTTGCGGCACATCTTTAAGTCCCATATTATATAGGATATTAAATCATAACACGTTGTTGACTTTAAGTCCGATATTATATAAACCATTTAAATAAATGTTAGTTGGGTGGGTGTTGTTTATAAATATTTCCAGATAGATTACTACGATCCTATTTGATAACCATTTGGTTGTTGACTTTTGTAAATTGAGCTTATAAATCTTACTTGCACCCATAGTTTCTATGTTTTATTATCCACTTTCTACCAATGTTTATAAAAATCTAAGTCAGAGTTTCAAAAACTAAATATAGTGGCTTTTGAAGACTTATTTTTGTTTTCAAAATTGAACTAAAGATTCAAGTGTTTTTTCAAGAGGGAACCATAATTGTTGGATAGTTTTTTAAAACTATTTTTTGTAAATTTTTCTAATCATCTCTAGTCTTATTAGTATTGAAAAATCAACAAAAAAAGATAAAGGACTTATTAACTTCTTGCTCTGAATGAGATTAAAAGTTGAAACATTGTTCTTCCAATTCTTCTTAAAATCCATCTGTTGATACTTGTGACCCCATAACCTTTTTCCTAATGTTATTTCTTTACTTCCCTGGCTACCCCCTGATGAGGGAAGGAGAGAGGGGTTAAGGGTTTTTGATATTATTCGGTGTTTAATCTTTGGAATGAATTGCATGGTTTTAGGAAAACAGAGGAGCAGAAGCCAAAAGAACAGAGACCAAAAGCCAGTGAGAATAAGCCTGTTATGACTGAATGAGAATGCGTTGGAGTGAGTGTGTTTTGTTTTGTTTTGTTTTGAAATTGGTCAATATTATGGACAAGCTTTGTACTGTGTGAATCCAAACCGTAAATCGTTTAAAATTGTACTGAACCTTCTTATAAACTGAACCTTCTTATAAACATCCAATGAAGATCATGTTGAATGTGGTGGGATAATCTTTCCTCTACTAATGGCAAGTCTTTCCCATGTTCGATTGTAAGTGCTAGCGTTATCATGTTTTTTCTGGTGCTGAAGTTAAAATTGAC

mRNA sequence

ATGCTCCGTATTCATTTGGGCCGGGTACCCGATGACCCGGCAGCCCCATATGGTTCTATAAATTTAAAGCCTCGTCAACAACTAGTCTCAACGTTTACGCTTGGACGCCTTCAGAAACTAAGAAGCGCACCAATTAGGGTTTCGTTTTGTTTTGTGAAAGCTCAATATTCATTATCGATAATGATCTACGACGTTAACTCACCTCTCTTCCGCTCCTTCCTCAGCCAGAAAGGAGGCCCTTCTGACAAAAGGAAAACAGAGGAGCAGAAGCCAAAAGAACAGAGACCAAAAGCCAGTGAGAATAAGCCTGTTATGACTGAATGAGAATGCGTTGGAGTGAGTGTGTTTTGTTTTGTTTTGTTTTGAAATTGGTCAATATTATGGACAAGCTTTGTACTGTGTGAATCCAAACCGTAAATCGTTTAAAATTGTACTGAACCTTCTTATAAACTGAACCTTCTTATAAACATCCAATGAAGATCATGTTGAATGTGGTGGGATAATCTTTCCTCTACTAATGGCAAGTCTTTCCCATGTTCGATTGTAAGTGCTAGCGTTATCATGTTTTTTCTGGTGCTGAAGTTAAAATTGAC

Coding sequence (CDS)

ATGCTCCGTATTCATTTGGGCCGGGTACCCGATGACCCGGCAGCCCCATATGGTTCTATAAATTTAAAGCCTCGTCAACAACTAGTCTCAACGTTTACGCTTGGACGCCTTCAGAAACTAAGAAGCGCACCAATTAGGGTTTCGTTTTGTTTTGTGAAAGCTCAATATTCATTATCGATAATGATCTACGACGTTAACTCACCTCTCTTCCGCTCCTTCCTCAGCCAGAAAGGAGGCCCTTCTGACAAAAGGAAAACAGAGGAGCAGAAGCCAAAAGAACAGAGACCAAAAGCCAGTGAGAATAAGCCTGTTATGACTGAATGA

Protein sequence

MLRIHLGRVPDDPAAPYGSINLKPRQQLVSTFTLGRLQKLRSAPIRVSFCFVKAQYSLSIMIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMTE

Homology

[Close]

BLAST of CcUC09G171590 vs. NCBI nr
Match: RDX73010.1 (Wound-induced basic protein, partial [Mucuna pruriens])

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-15
Identity = 54/75 (72.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 35  GRLQKLRSA--PIRVSFCFVKAQYSLSIMIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPK 94
           GRLQ+L S    IRVS          + MIYDVNSPLFRSFLSQKGG SDKRKT+EQKPK
Sbjct: 30  GRLQQLCSTEKKIRVSSLPSNLLLQKTTMIYDVNSPLFRSFLSQKGGASDKRKTDEQKPK 89

Query: 95  EQRPKASENKPVMTE 108
           EQRPKASENKP+MTE
Sbjct: 90  EQRPKASENKPIMTE 104

[Close]

BLAST of CcUC09G171590 vs. NCBI nr
Match: XP_034916000.1 (LOW QUALITY PROTEIN: wound-induced basic protein [Populus alba])

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-15
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 28  LVSTFTLGRLQKLRSAPIRVSFCFVKAQYSLSI--MIYDVNSPLFRSFLSQKGGPSDKRK 87
           LV ++  GR +K R +        VKA  SL++  MIYDVNSPLFRSFLSQKGG SDKRK
Sbjct: 3   LVRSYRKGRRRKTRVS--------VKANNSLTVDKMIYDVNSPLFRSFLSQKGGSSDKRK 62

Query: 88  TEEQKPKEQRPKASENKPVMTE 108
            EEQKPKEQRPKA+ENKPVMTE
Sbjct: 63  MEEQKPKEQRPKANENKPVMTE 76

[Close]

BLAST of CcUC09G171590 vs. NCBI nr
Match: XP_004149775.1 (wound-induced basic protein [Cucumis sativus] >XP_008458052.1 PREDICTED: wound-induced basic protein [Cucumis melo] >XP_022159020.1 wound-induced basic protein [Momordica charantia] >XP_038896891.1 wound-induced basic protein [Benincasa hispida])

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 61  MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMTE 108
           MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMTE
Sbjct: 1   MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMTE 47

[Close]

BLAST of CcUC09G171590 vs. NCBI nr
Match: XP_002301801.1 (wound-induced basic protein [Populus trichocarpa])

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-15
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 28  LVSTFTLGRLQKLRSAPIRVSFCFVKAQYSLSI--MIYDVNSPLFRSFLSQKGGPSDKRK 87
           LV ++  GR +K R +        VKA  SL++  MIYDVNSPLFRSFLSQKGG SDKRK
Sbjct: 3   LVRSYRKGRRRKTRVS--------VKASNSLTVDNMIYDVNSPLFRSFLSQKGGSSDKRK 62

Query: 88  TEEQKPKEQRPKASENKPVMTE 108
            EEQKPKEQRPKA+ENKPVMTE
Sbjct: 63  MEEQKPKEQRPKANENKPVMTE 76

[Close]

BLAST of CcUC09G171590 vs. NCBI nr
Match: KAG5252219.1 (wound-responsive family protein [Salix suchowensis])

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-15
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 28  LVSTFTLGRLQKLRSAPIRVSFCFVKAQYSLSI--MIYDVNSPLFRSFLSQKGGPSDKRK 87
           LV ++  GR +K R +        VKA  SL++  MIYDVNSPLFRSFLSQKGG SDKRK
Sbjct: 3   LVCSYRQGRRRKARVS--------VKASNSLTVDNMIYDVNSPLFRSFLSQKGGSSDKRK 62

Query: 88  TEEQKPKEQRPKASENKPVMTE 108
            EEQKPKEQRPKA+ENKPVMTE
Sbjct: 63  MEEQKPKEQRPKANENKPVMTE 76

[Close]

BLAST of CcUC09G171590 vs. ExPASy Swiss-Prot
Match: Q09020 (Wound-induced basic protein OS=Phaseolus vulgaris OX=3885 GN=PR4 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-16
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 61  MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMTE 108
           MIYDVNSPLFRSFLSQKGG SDKRKTEEQKPKE RPKASENKP+MTE
Sbjct: 1   MIYDVNSPLFRSFLSQKGGSSDKRKTEEQKPKEHRPKASENKPIMTE 47

[Close]

BLAST of CcUC09G171590 vs. ExPASy TrEMBL
Match: A0A371F403 (Wound-induced basic protein (Fragment) OS=Mucuna pruriens OX=157652 GN=PR4 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 54/75 (72.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 35  GRLQKLRSA--PIRVSFCFVKAQYSLSIMIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPK 94
           GRLQ+L S    IRVS          + MIYDVNSPLFRSFLSQKGG SDKRKT+EQKPK
Sbjct: 30  GRLQQLCSTEKKIRVSSLPSNLLLQKTTMIYDVNSPLFRSFLSQKGGASDKRKTDEQKPK 89

Query: 95  EQRPKASENKPVMTE 108
           EQRPKASENKP+MTE
Sbjct: 90  EQRPKASENKPIMTE 104

[Close]

BLAST of CcUC09G171590 vs. ExPASy TrEMBL
Match: A0A6J1DXG9 (wound-induced basic protein OS=Momordica charantia OX=3673 GN=LOC111025466 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 61  MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMTE 108
           MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMTE
Sbjct: 1   MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMTE 47

[Close]

BLAST of CcUC09G171590 vs. ExPASy TrEMBL
Match: A0A1S3C870 (wound-induced basic protein OS=Cucumis melo OX=3656 GN=LOC103497592 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 61  MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMTE 108
           MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMTE
Sbjct: 1   MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMTE 47

[Close]

BLAST of CcUC09G171590 vs. ExPASy TrEMBL
Match: A0A0V0GFI5 (Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.6e-15
Identity = 52/69 (75.36%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 39  KLRSAPIRVSFCFVKAQYSLSIMIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKA 98
           K+  A IRV FC        + MIYDVNSPLFRSFLSQKGG SDKRKTEEQKPKEQRPKA
Sbjct: 2   KVNKAEIRVLFC-----CRPTTMIYDVNSPLFRSFLSQKGGASDKRKTEEQKPKEQRPKA 61

Query: 99  SENKPVMTE 108
           SENKPVM E
Sbjct: 62  SENKPVMNE 65

[Close]

BLAST of CcUC09G171590 vs. ExPASy TrEMBL
Match: A0A6N2LGA5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS214898 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.8e-15
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 28  LVSTFTLGRLQKLRSAPIRVSFCFVKAQYSLSI--MIYDVNSPLFRSFLSQKGGPSDKRK 87
           LV +   GR +K R +        VKA  SL++  MIYDVNSPLFRSFLSQKGG SDKRK
Sbjct: 3   LVCSHRQGRRRKARVS--------VKASNSLTVDNMIYDVNSPLFRSFLSQKGGSSDKRK 62

Query: 88  TEEQKPKEQRPKASENKPVMTE 108
            EEQKPKEQRPKA+ENKPVMTE
Sbjct: 63  MEEQKPKEQRPKANENKPVMTE 76

[Close]

BLAST of CcUC09G171590 vs. TAIR 10
Match: AT3G07230.1 (wound-responsive protein-related )

HSP 1 Score: 67.4 bits (163), Expect = 8.0e-12
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 61  MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMTE 108
           MIYDVNS LFRSFLSQKG  SDKRK E+ KP+EQ+PKAS+NKPVM E
Sbjct: 1   MIYDVNSGLFRSFLSQKGSSSDKRKMED-KPREQKPKASDNKPVMNE 46

The following BLAST results are available for this feature:

BLAST of CcUC09G171590 vs. NCBI nr


Match Name	E-value	Identity	Description
RDX73010.1	4.2e-15	72.00	Wound-induced basic protein, partial [Mucuna pruriens]	[more]
XP_034916000.1	5.5e-15	67.07	LOW QUALITY PROTEIN: wound-induced basic protein [Populus alba]	[more]
XP_004149775.1	5.5e-15	100.00	wound-induced basic protein [Cucumis sativus] >XP_008458052.1 PREDICTED: wound-i...	[more]
XP_002301801.1	5.5e-15	67.07	wound-induced basic protein [Populus trichocarpa]	[more]
KAG5252219.1	5.5e-15	67.07	wound-responsive family protein [Salix suchowensis]	[more]

BLAST of CcUC09G171590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09020	3.1e-16	93.62	Wound-induced basic protein OS=Phaseolus vulgaris OX=3885 GN=PR4 PE=2 SV=1	[more]

BLAST of CcUC09G171590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371F403	2.1e-15	72.00	Wound-induced basic protein (Fragment) OS=Mucuna pruriens OX=157652 GN=PR4 PE=4 ...	[more]
A0A6J1DXG9	2.7e-15	100.00	wound-induced basic protein OS=Momordica charantia OX=3673 GN=LOC111025466 PE=4 ...	[more]
A0A1S3C870	2.7e-15	100.00	wound-induced basic protein OS=Cucumis melo OX=3656 GN=LOC103497592 PE=4 SV=1	[more]
A0A0V0GFI5	4.6e-15	75.36	Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
A0A6N2LGA5	7.8e-15	67.07	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS214898 PE=4 SV=...	[more]

BLAST of CcUC09G171590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07230.1	8.0e-12	78.72	wound-responsive protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012643	Wound-inducible basic	PFAM	PF08186	Wound_ind	coord: 61..107 e-value: 4.4E-21 score: 75.0
IPR012643	Wound-inducible basic	PANTHER	PTHR36752	OS12G0405700 PROTEIN	coord: 61..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G171590.1	CcUC09G171590.1	mRNA