CcUC09G170390 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G170390
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCicolChr09: 6687484 .. 6688216 (+)
RNA-Seq ExpressionCcUC09G170390
SyntenyCcUC09G170390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTATTTATACCTCTTTGATTTACCTGTGGTGGAAACTGGAAGGAGGCTAAACATTCATTAATTGATATGGTGGATCAAGGTGTTCGACCAATGTGGTCACATTCAGTGTGTTGATTGATATGCTTTGCAAGGAAGGAAAGGCCATCCAGGCTCAAGAGTTGCTAGAGTGATGATTCACACAGGAAATGTTCCAGATTCGTTTACTTATAATTCACTGGTCGAGGGGTTTTGTTTGGTTGGTGACTTGAATAGTGTAAGGGAGCTCTTTGTTAGTATGCTAAGTAAGGGATGTGAACCTAATGTGATTAGCTACAATGTGCTCATCAATGGGTATTGTAAAACTTAGAAGGTCGAAGACGCAATGAAGCTTTACAATGAAATGCTTCTAGAGGGAAAGAGACCAGATGTGAAAACATATGGTGCCATGTTAACAGGGTTTTTTCAGGCAGGCAAGGTTGGTGATGCAAAAGAGCTACTTGGTGTTACGAAAGCTTATGGTATTGCTACAGATTCATGTATATATCTTATTTTCTTAGATGAGTTGTGTAAGAATGGTTGTTTATTTGAAGCGATGGAACTTTTTAAAGAGCTAACATCATGCAACTTGAAATTGGACATTAGAATCTTTAATTGTCTAATTGATGGCTTATGTAAAGCAAGGAACTTGAAACTGCCTAGGAGCTTTTCGGAAAGCTGTCCCATGAAGGGCATCAACCAAATGTTGTGA

mRNA sequence

ATGTGGAAAGGCCATCCAGGCTCAAGAGTTGCTAGAGTGATGATTCACACAGGAAATGTTCCAGATTCGTTTACTTATAATTCACTGGTCGAGGGGTTTTGTTTGGTTGGTGACTTGAATAGTGTAAGGGAGCTCTTTGTTAGTATGCTAAGTAAGGGATGTGAACCTAATGTCGAAGACGCAATGAAGCTTTACAATGAAATGCTTCTAGAGGGAAAGAGACCAGATGTGAAAACATATGGTGCCATGTTAACAGGGTTTTTTCAGGCAGGCAAGGTTGGTGATGCAAAAGAGCTACTTGGTGTTACGAAAGCTTATGGTATTGCTACAGATTCATGTATATATCTTATTTTCTTAGATGAGTTGTGTAAGAATGGTTGTTTATTTGAAGCGATGGAACTTTTTAAAGAGCTAACATCATGCAACTTGAAATTGGACATTAGAATCTTTAATTGTCTAATTGATGGCTTATGTAAAGCAAGGAACTTGAAACTGCCTAGGAGCTTTTCGGAAAGCTGTCCCATGAAGGGCATCAACCAAATGTTGTGA

Coding sequence (CDS)

ATGTGGAAAGGCCATCCAGGCTCAAGAGTTGCTAGAGTGATGATTCACACAGGAAATGTTCCAGATTCGTTTACTTATAATTCACTGGTCGAGGGGTTTTGTTTGGTTGGTGACTTGAATAGTGTAAGGGAGCTCTTTGTTAGTATGCTAAGTAAGGGATGTGAACCTAATGTCGAAGACGCAATGAAGCTTTACAATGAAATGCTTCTAGAGGGAAAGAGACCAGATGTGAAAACATATGGTGCCATGTTAACAGGGTTTTTTCAGGCAGGCAAGGTTGGTGATGCAAAAGAGCTACTTGGTGTTACGAAAGCTTATGGTATTGCTACAGATTCATGTATATATCTTATTTTCTTAGATGAGTTGTGTAAGAATGGTTGTTTATTTGAAGCGATGGAACTTTTTAAAGAGCTAACATCATGCAACTTGAAATTGGACATTAGAATCTTTAATTGTCTAATTGATGGCTTATGTAAAGCAAGGAACTTGAAACTGCCTAGGAGCTTTTCGGAAAGCTGTCCCATGAAGGGCATCAACCAAATGTTGTGA

Protein sequence

MWKGHPGSRVARVMIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPNVEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYLIFLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMKGINQML
Homology
BLAST of CcUC09G170390 vs. NCBI nr
Match: XP_038897332.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 228.8 bits (582), Expect = 3.8e-56
Identity = 117/182 (64.29%), Postives = 131/182 (71.98%), Query Frame = 0

Query: 13  VMIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN--------------- 72
           +MI  G VPD  TY SL+EGFC VGDLNS RELF++M SKGCEP+               
Sbjct: 290 MMIQRGIVPDLVTYTSLIEGFCKVGDLNSARELFINMPSKGCEPDVISYTMLINGYCKTL 349

Query: 73  -VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYL 132
            V +AMKLYNEML  GKRP+VKTYGA+LTG FQAGKVGDAK+L GV KAYG+A DSCIY 
Sbjct: 350 KVNEAMKLYNEMLQVGKRPNVKTYGALLTGLFQAGKVGDAKKLFGVMKAYGVAIDSCIYG 409

Query: 133 IFLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMK 179
           IFLD LCKNGCLFEAMELF EL S NLKLDI IFNCLIDGLCK   L+      +    +
Sbjct: 410 IFLDGLCKNGCLFEAMELFNELKSYNLKLDIGIFNCLIDGLCKVGTLETAWELFKKLSQE 469

BLAST of CcUC09G170390 vs. NCBI nr
Match: XP_038896203.1 (pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida])

HSP 1 Score: 225.7 bits (574), Expect = 3.2e-55
Identity = 118/182 (64.84%), Postives = 130/182 (71.43%), Query Frame = 0

Query: 13  VMIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN--------------- 72
           VMI  G VP+  TYNSL+EGFCLVGDLNS RELFVSM SKGCEP+               
Sbjct: 348 VMIQRGIVPNLVTYNSLIEGFCLVGDLNSGRELFVSMPSKGCEPDVISYTTLINGYCKTL 407

Query: 73  -VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYL 132
            V +AMKLYNEML  GKRP+VKTYGA+LTG FQAGKVGDAK+L GV KAYG+  DSCIY 
Sbjct: 408 KVNEAMKLYNEMLQVGKRPNVKTYGALLTGLFQAGKVGDAKKLFGVMKAYGVPIDSCIYG 467

Query: 133 IFLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMK 179
           IFLD LCKNGCLFEAME F EL S NLKLDI IFN LIDGLCK   L+      +    +
Sbjct: 468 IFLDGLCKNGCLFEAMEFFNELKSYNLKLDIGIFNSLIDGLCKVGKLETAWELFKKLSQE 527

BLAST of CcUC09G170390 vs. NCBI nr
Match: XP_038877921.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isoform X2 [Benincasa hispida])

HSP 1 Score: 221.5 bits (563), Expect = 6.0e-54
Identity = 115/182 (63.19%), Postives = 127/182 (69.78%), Query Frame = 0

Query: 13  VMIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN--------------- 72
           +M H G +PD FTYNSL+EGFCLVGDLN   ELFVSM SKGCEP+               
Sbjct: 216 IMTHRGTLPDLFTYNSLIEGFCLVGDLNGANELFVSMPSKGCEPDVISYTVLINGYCKSL 275

Query: 73  -VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYL 132
            VE+AMKLYN ML  GKRPDVKTYGA+LTG F AGKVGDAK+L GV KAYGI   S IY 
Sbjct: 276 KVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFLAGKVGDAKKLFGVIKAYGIPEGSYIYG 335

Query: 133 IFLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMK 179
           IFLD LCKNGCLFEA+E F EL S NLKLDI  F+CLIDGLCKA  L+      E    +
Sbjct: 336 IFLDGLCKNGCLFEAIEFFNELKSYNLKLDIESFSCLIDGLCKAGKLETAWEQFEKLSQE 395

BLAST of CcUC09G170390 vs. NCBI nr
Match: XP_038877920.1 (pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Benincasa hispida])

HSP 1 Score: 221.5 bits (563), Expect = 6.0e-54
Identity = 115/182 (63.19%), Postives = 127/182 (69.78%), Query Frame = 0

Query: 13  VMIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN--------------- 72
           +M H G +PD FTYNSL+EGFCLVGDLN   ELFVSM SKGCEP+               
Sbjct: 357 IMTHRGTLPDLFTYNSLIEGFCLVGDLNGANELFVSMPSKGCEPDVISYTVLINGYCKSL 416

Query: 73  -VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYL 132
            VE+AMKLYN ML  GKRPDVKTYGA+LTG F AGKVGDAK+L GV KAYGI   S IY 
Sbjct: 417 KVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFLAGKVGDAKKLFGVIKAYGIPEGSYIYG 476

Query: 133 IFLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMK 179
           IFLD LCKNGCLFEA+E F EL S NLKLDI  F+CLIDGLCKA  L+      E    +
Sbjct: 477 IFLDGLCKNGCLFEAIEFFNELKSYNLKLDIESFSCLIDGLCKAGKLETAWEQFEKLSQE 536

BLAST of CcUC09G170390 vs. NCBI nr
Match: KAE8646284.1 (hypothetical protein Csa_016592 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 6.0e-54
Identity = 116/180 (64.44%), Postives = 127/180 (70.56%), Query Frame = 0

Query: 13  VMIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN--------------- 72
           VMI  G VP+  TYNSL+EGFCLVGDLNS RELFVSM SKGCEP+               
Sbjct: 337 VMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTS 396

Query: 73  -VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYL 132
            VE+AMKLYN ML  GKRPDVKTYGA+LTG FQ GKVGDAK+L GV K YGI  D  IY 
Sbjct: 397 KVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYG 456

Query: 133 IFLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMK 177
           IFL+ LCKNGCLFEAMELF +L S N+KLDI  FNCLIDGLCKA  L+      E  P +
Sbjct: 457 IFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQE 516

BLAST of CcUC09G170390 vs. ExPASy Swiss-Prot
Match: Q0WKV3 (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12300 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.1e-25
Identity = 61/181 (33.70%), Postives = 96/181 (53.04%), Query Frame = 0

Query: 14  MIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN---------------- 73
           MIH G  PD+ TY SL++GFC    L+   ++   M+SKGC+PN                
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 418

Query: 74  VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYLI 133
           ++D ++L+ +M L G   D  TY  ++ GF + GK+  AKEL     +  +  +   Y I
Sbjct: 419 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 478

Query: 134 FLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMKG 179
            LD LC NG   +A+E+F+++    ++LDI I+N +I G+C A  +        S P+KG
Sbjct: 479 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 538

BLAST of CcUC09G170390 vs. ExPASy Swiss-Prot
Match: Q6NQ83 (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22470 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-25
Identity = 65/181 (35.91%), Postives = 97/181 (53.59%), Query Frame = 0

Query: 14  MIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN---------------- 73
           MI  G  PD+ TYNSL++GFC    L+   ++F  M+SKGCEP+                
Sbjct: 341 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 400

Query: 74  VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYLI 133
           V+D M+L+ E+  +G  P+  TY  ++ GF Q+GK+  AKEL     + G+      Y I
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query: 134 FLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMKG 179
            LD LC NG L +A+E+F+++    + L I I+N +I G+C A  +    S   S   KG
Sbjct: 461 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 520

BLAST of CcUC09G170390 vs. ExPASy Swiss-Prot
Match: Q0WKZ3 (Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana OX=3702 GN=At1g64580 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.0e-24
Identity = 64/181 (35.36%), Postives = 94/181 (51.93%), Query Frame = 0

Query: 14  MIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN---------------- 73
           MI    VP+ FTYNSL+ GFC+ G L   + +F  M+SKGC P+                
Sbjct: 280 MIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKR 339

Query: 74  VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYLI 133
           VED MKL+ EM  +G   D  TY  ++ G+ QAGK+  A+++       G++ D   Y I
Sbjct: 340 VEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNI 399

Query: 134 FLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMKG 179
            LD LC NG + +A+ + ++L    + +DI  +N +I GLC+   LK       S   KG
Sbjct: 400 LLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKG 459

BLAST of CcUC09G170390 vs. ExPASy Swiss-Prot
Match: Q9ASZ8 (Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX=3702 GN=At1g12620 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.8e-24
Identity = 61/181 (33.70%), Postives = 93/181 (51.38%), Query Frame = 0

Query: 14  MIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN---------------- 73
           MI  G  PD+ TY SL++GFC    L+    +   M+SKGC PN                
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402

Query: 74  VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYLI 133
           ++D ++L+ +M L G   D  TY  ++ GF + GK+  AKEL     +  +  D   Y I
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462

Query: 134 FLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMKG 179
            LD LC NG   +A+E+F+++    ++LDI I+N +I G+C A  +        S P+KG
Sbjct: 463 LLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522

BLAST of CcUC09G170390 vs. ExPASy Swiss-Prot
Match: Q9LPX2 (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.4e-23
Identity = 59/186 (31.72%), Postives = 98/186 (52.69%), Query Frame = 0

Query: 9   RVARVMIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN----------- 68
           ++ + M+  G  P++ TYNSL++GFC    L    ++   M+SKGC+P+           
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413

Query: 69  -----VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDS 128
                ++D ++L+ EM L G   +  TY  ++ GF Q+GK+  AK+L     +  +  D 
Sbjct: 414 CKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDI 473

Query: 129 CIYLIFLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSES 179
             Y I LD LC NG L +A+E+F ++    ++LDI I+  +I G+C A  +        S
Sbjct: 474 VSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCS 533

BLAST of CcUC09G170390 vs. ExPASy TrEMBL
Match: A0A5A7UUW8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00730 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.5e-53
Identity = 111/186 (59.68%), Postives = 134/186 (72.04%), Query Frame = 0

Query: 9   RVARVMIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN----------- 68
           ++  +MI +G VP+ FTYNSL++GFC+VGDLNS RELFVSM SKGCEP+           
Sbjct: 277 KLLELMIESGIVPNVFTYNSLLKGFCMVGDLNSARELFVSMPSKGCEPDVISYTVLINGY 336

Query: 69  -----VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDS 128
                VE+AMKLYN+MLL GKRP+V TYGA+LTG F AGKVGDAK+L    KA+GIA +S
Sbjct: 337 CKTLKVEEAMKLYNKMLLVGKRPNVITYGALLTGLFLAGKVGDAKKLFSAMKAHGIAENS 396

Query: 129 CIYLIFLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSES 179
           CIY IFLD LCKNGCLFEAMELF +L S N KL+I  ++CLIDGLCKA  L+      E 
Sbjct: 397 CIYSIFLDGLCKNGCLFEAMELFTKLKSYNFKLEIETYSCLIDGLCKAGKLETAWELFEK 456

BLAST of CcUC09G170390 vs. ExPASy TrEMBL
Match: A0A5D3CCW0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00420 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.9e-53
Identity = 112/168 (66.67%), Postives = 124/168 (73.81%), Query Frame = 0

Query: 13  VMIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN--------------- 72
           VMI  G+VP+  TYNSL+EGFCLVGDLNS RELF SMLSKGCEP+               
Sbjct: 337 VMIQRGSVPNLLTYNSLIEGFCLVGDLNSARELFFSMLSKGCEPDVICYTVLINGYCKTS 396

Query: 73  -VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYL 132
            VE+AMK+YN ML  GKRPDVKTYGA+L G FQ GKVGDAK+L GV K YGI  D  IY 
Sbjct: 397 KVEEAMKIYNGMLQVGKRPDVKTYGALLRGLFQGGKVGDAKKLFGVMKVYGIPEDLYIYG 456

Query: 133 IFLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLK 165
           IFL+ LCKNGCLFEAMELF +L S N+KLDI  FNCLIDGLCKA  L+
Sbjct: 457 IFLNGLCKNGCLFEAMELFNKLKSYNMKLDIECFNCLIDGLCKAGKLE 504

BLAST of CcUC09G170390 vs. ExPASy TrEMBL
Match: A0A1S4DYL3 (pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492587 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.9e-53
Identity = 112/168 (66.67%), Postives = 124/168 (73.81%), Query Frame = 0

Query: 13  VMIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN--------------- 72
           VMI  G+VP+  TYNSL+EGFCLVGDLNS RELF SMLSKGCEP+               
Sbjct: 337 VMIQRGSVPNLLTYNSLIEGFCLVGDLNSARELFFSMLSKGCEPDVICYTVLINGYCKTS 396

Query: 73  -VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYL 132
            VE+AMK+YN ML  GKRPDVKTYGA+L G FQ GKVGDAK+L GV K YGI  D  IY 
Sbjct: 397 KVEEAMKIYNGMLQVGKRPDVKTYGALLRGLFQGGKVGDAKKLFGVMKVYGIPEDLYIYG 456

Query: 133 IFLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLK 165
           IFL+ LCKNGCLFEAMELF +L S N+KLDI  FNCLIDGLCKA  L+
Sbjct: 457 IFLNGLCKNGCLFEAMELFNKLKSYNMKLDIECFNCLIDGLCKAGKLE 504

BLAST of CcUC09G170390 vs. ExPASy TrEMBL
Match: A0A1S4DYL6 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492586 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.1e-50
Identity = 110/186 (59.14%), Postives = 128/186 (68.82%), Query Frame = 0

Query: 9   RVARVMIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN----------- 68
           ++  VMI  G VPD F Y+SL+EGFC+VGDLNS RELFVSM SKGCEP+           
Sbjct: 277 KLFEVMIQRGIVPDLFIYSSLMEGFCMVGDLNSARELFVSMPSKGCEPDVISYTVLINGY 336

Query: 69  -----VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDS 128
                VE+AMKLYNEMLL GKRP+V TYGA+LTG F AGKVGDAK+L    KA GI+ +S
Sbjct: 337 CKTLKVEEAMKLYNEMLLVGKRPNVITYGALLTGLFLAGKVGDAKKLFSAMKARGISANS 396

Query: 129 CIYLIFLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSES 179
            IY I LD LCKNGCLFEAM+LF EL S N KLDI  ++CLIDGLCK   L+      E 
Sbjct: 397 HIYGIILDGLCKNGCLFEAMKLFTELKSYNFKLDIETYSCLIDGLCKEGKLETAWELFEK 456

BLAST of CcUC09G170390 vs. ExPASy TrEMBL
Match: A0A5D3C8J0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00440 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.1e-50
Identity = 110/186 (59.14%), Postives = 128/186 (68.82%), Query Frame = 0

Query: 9   RVARVMIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN----------- 68
           ++  VMI  G VPD F Y+SL+EGFC+VGDLNS RELFVSM SKGCEP+           
Sbjct: 277 KLFEVMIQRGIVPDLFIYSSLMEGFCMVGDLNSARELFVSMPSKGCEPDVISYTVLINGY 336

Query: 69  -----VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDS 128
                VE+AMKLYNEMLL GKRP+V TYGA+LTG F AGKVGDAK+L    KA GI+ +S
Sbjct: 337 CKTLKVEEAMKLYNEMLLVGKRPNVITYGALLTGLFLAGKVGDAKKLFSAMKARGISANS 396

Query: 129 CIYLIFLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSES 179
            IY I LD LCKNGCLFEAM+LF EL S N KLDI  ++CLIDGLCK   L+      E 
Sbjct: 397 HIYGIILDGLCKNGCLFEAMKLFTELKSYNFKLDIETYSCLIDGLCKEGKLETAWELFEK 456

BLAST of CcUC09G170390 vs. TAIR 10
Match: AT1G12300.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-26
Identity = 61/181 (33.70%), Postives = 96/181 (53.04%), Query Frame = 0

Query: 14  MIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN---------------- 73
           MIH G  PD+ TY SL++GFC    L+   ++   M+SKGC+PN                
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 418

Query: 74  VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYLI 133
           ++D ++L+ +M L G   D  TY  ++ GF + GK+  AKEL     +  +  +   Y I
Sbjct: 419 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 478

Query: 134 FLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMKG 179
            LD LC NG   +A+E+F+++    ++LDI I+N +I G+C A  +        S P+KG
Sbjct: 479 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 538

BLAST of CcUC09G170390 vs. TAIR 10
Match: AT3G22470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 2.0e-26
Identity = 65/181 (35.91%), Postives = 97/181 (53.59%), Query Frame = 0

Query: 14  MIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN---------------- 73
           MI  G  PD+ TYNSL++GFC    L+   ++F  M+SKGCEP+                
Sbjct: 341 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 400

Query: 74  VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYLI 133
           V+D M+L+ E+  +G  P+  TY  ++ GF Q+GK+  AKEL     + G+      Y I
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query: 134 FLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMKG 179
            LD LC NG L +A+E+F+++    + L I I+N +I G+C A  +    S   S   KG
Sbjct: 461 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 520

BLAST of CcUC09G170390 vs. TAIR 10
Match: AT1G64580.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-25
Identity = 64/181 (35.36%), Postives = 94/181 (51.93%), Query Frame = 0

Query: 14  MIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN---------------- 73
           MI    VP+ FTYNSL+ GFC+ G L   + +F  M+SKGC P+                
Sbjct: 280 MIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKR 339

Query: 74  VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYLI 133
           VED MKL+ EM  +G   D  TY  ++ G+ QAGK+  A+++       G++ D   Y I
Sbjct: 340 VEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNI 399

Query: 134 FLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMKG 179
            LD LC NG + +A+ + ++L    + +DI  +N +I GLC+   LK       S   KG
Sbjct: 400 LLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKG 459

BLAST of CcUC09G170390 vs. TAIR 10
Match: AT1G12620.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 6.3e-25
Identity = 61/181 (33.70%), Postives = 93/181 (51.38%), Query Frame = 0

Query: 14  MIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN---------------- 73
           MI  G  PD+ TY SL++GFC    L+    +   M+SKGC PN                
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402

Query: 74  VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDSCIYLI 133
           ++D ++L+ +M L G   D  TY  ++ GF + GK+  AKEL     +  +  D   Y I
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462

Query: 134 FLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSESCPMKG 179
            LD LC NG   +A+E+F+++    ++LDI I+N +I G+C A  +        S P+KG
Sbjct: 463 LLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522

BLAST of CcUC09G170390 vs. TAIR 10
Match: AT1G12775.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 3.1e-24
Identity = 59/186 (31.72%), Postives = 98/186 (52.69%), Query Frame = 0

Query: 9   RVARVMIHTGNVPDSFTYNSLVEGFCLVGDLNSVRELFVSMLSKGCEPN----------- 68
           ++ + M+  G  P++ TYNSL++GFC    L    ++   M+SKGC+P+           
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413

Query: 69  -----VEDAMKLYNEMLLEGKRPDVKTYGAMLTGFFQAGKVGDAKELLGVTKAYGIATDS 128
                ++D ++L+ EM L G   +  TY  ++ GF Q+GK+  AK+L     +  +  D 
Sbjct: 414 CKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDI 473

Query: 129 CIYLIFLDELCKNGCLFEAMELFKELTSCNLKLDIRIFNCLIDGLCKARNLKLPRSFSES 179
             Y I LD LC NG L +A+E+F ++    ++LDI I+  +I G+C A  +        S
Sbjct: 474 VSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCS 533

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038897332.13.8e-5664.29pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benin... [more]
XP_038896203.13.2e-5564.84pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida][more]
XP_038877921.16.0e-5463.19pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isofor... [more]
XP_038877920.16.0e-5463.19pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Benincasa... [more]
KAE8646284.16.0e-5464.44hypothetical protein Csa_016592 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Q0WKV32.1e-2533.70Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidop... [more]
Q6NQ832.7e-2535.91Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop... [more]
Q0WKZ33.0e-2435.36Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana OX... [more]
Q9ASZ88.8e-2433.70Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX... [more]
Q9LPX24.4e-2331.72Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A5A7UUW81.5e-5359.68Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3CCW01.9e-5366.67Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4DYL31.9e-5366.67pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis... [more]
A0A1S4DYL61.1e-5059.14pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc... [more]
A0A5D3C8J01.1e-5059.14Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
AT1G12300.11.5e-2633.70Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G22470.12.0e-2635.91Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G64580.12.2e-2535.36Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G12620.16.3e-2533.70Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G12775.13.1e-2431.72Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 7..58
e-value: 9.3E-10
score: 40.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 59..179
e-value: 9.7E-25
score: 89.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 114..146
e-value: 2.9E-4
score: 18.8
coord: 24..58
e-value: 4.2E-9
score: 34.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 21..58
e-value: 7.9E-8
score: 32.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 115..142
e-value: 4.5E-4
score: 20.3
coord: 149..163
e-value: 0.25
score: 11.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 64..111
e-value: 0.0041
score: 17.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 22..56
score: 12.715165
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..145
score: 8.769097
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 76..110
score: 8.867749
NoneNo IPR availablePANTHERPTHR47942:SF55PPR CONTAINING PLANT-LIKE PROTEINcoord: 10..178
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 10..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G170390.1CcUC09G170390.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding