CcUC09G168560 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G168560
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr09: 4891692 .. 4892309 (+)
RNA-Seq ExpressionCcUC09G168560
SyntenyCcUC09G168560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCCCAAGCGACCGATGGAGCTCATCAATGGCGGCTTCAAAGACCTCAACACAGTCCGAAACTGCAGCCCTGTTTCTCCCCTTCAACCGCTTGTTTTTCTTCAACCTCCCCAAGAATCGTGCCACGGTTTTGGCCTCTGTTATCGTCACCGACACCCCCGCTCGCGCCCATTTTGTGGGGCTTCGCTTGGCAGTGCTTGAAAATGGTGACAGCGATTGGATGCAGAGATCTTGGTGTCGTGTTACGCTGCAGGCTTTTTGGACATAGCTCGTCTTAGCGGAGTGGGTCAGCCATGGGAGAATGGCGATGAGGGCAAAAATGGTTGCGATTGATGCTCTTGTACTGGATCCACGCAACATGTTCGATGAAATGCCTGAAACAAGTGAAAAAAGGTATGTGGAAATGGAAGATAAATTTCTATGAAATCAGCGTATACTGCTGTGATTTGTGAATGAGATTGAGATTAATGTGGGGATTAATGAGATTATGGGTGGATTATATAGTGAGGAAAAGGGTATTGGGGTGACTTGAAAAGTTCATTTTAAATAGCTTTATGCAGGTATTTGCTATACATTAGGCGTGGGGATGGTGATTGCATTGAAGAAGGGGAGGAGAAG

mRNA sequence

AACCCCAAGCGACCGATGGAGCTCATCAATGGCGGCTTCAAAGACCTCAACACAGTCCGAAACTGCAGCCCTGTTTCTCCCCTTCAACCGCTTGTTTTTCTTCAACCTCCCCAAGAATCGTGCCACGGTTTTGGCCTCTGTTATCGTCACCGACACCCCCGCTCGCGCCCATTTTGTGGGGCTTCGCTTGGCAGTGCTTGAAAATGGTGACAGCGATTGGATGCAGAGATCTTGGTGTCGTCTCGTCTTAGCGGAGTGGGTCAGCCATGGGAGAATGGCGATGAGGGCAAAAATGGTTGCGATTGATGCTCTTGTACTGGATCCACGCAACATGTTCGATGAAATGCCTGAAACAAGTGAAAAAAGGTATTTGCTATACATTAGGCGTGGGGATGGTGATTGCATTGAAGAAGGGGAGGAGAAG

Coding sequence (CDS)

ATGGCGGCTTCAAAGACCTCAACACAGTCCGAAACTGCAGCCCTGTTTCTCCCCTTCAACCGCTTGTTTTTCTTCAACCTCCCCAAGAATCGTGCCACGGTTTTGGCCTCTGTTATCGTCACCGACACCCCCGCTCGCGCCCATTTTGTGGGGCTTCGCTTGGCAGTGCTTGAAAATGGTGACAGCGATTGGATGCAGAGATCTTGGTGTCGTCTCGTCTTAGCGGAGTGGGTCAGCCATGGGAGAATGGCGATGAGGGCAAAAATGGTTGCGATTGATGCTCTTGTACTGGATCCACGCAACATGTTCGATGAAATGCCTGAAACAAGTGAAAAAAGGTATTTGCTATACATTAGGCGTGGGGATGGTGATTGCATTGAAGAAGGGGAGGAGAAG

Protein sequence

MAASKTSTQSETAALFLPFNRLFFFNLPKNRATVLASVIVTDTPARAHFVGLRLAVLENGDSDWMQRSWCRLVLAEWVSHGRMAMRAKMVAIDALVLDPRNMFDEMPETSEKRYLLYIRRGDGDCIEEGEEK
Homology
[Close]
BLAST of CcUC09G168560 vs. NCBI nr
Match: KAG7030219.1 (Serine/arginine-rich-splicing factor SR34, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-19
Identity = 64/110 (58.18%), Postives = 70/110 (63.64%), Query Frame = 0 

Query: 1   MAASKTSTQSETAALFLPFNRLFFFNLPKNRATVLASVIVTDTPARAHFVGLRLAVLENG 60
           MA+SKTSTQSETAALFLPF RL FF+L KN AT LASVIVTDT A AHF           
Sbjct: 1   MASSKTSTQSETAALFLPFIRLLFFSLTKNLATALASVIVTDTLALAHF----------- 60

Query: 61  DSDWMQRSWCRLVLAEWVSHGRMAMRAKMVAIDALVLDPRNMFDEMPETS 111
                      LV AE VSHGR+ M+AK V I+ L +  RNMFDEM E S
Sbjct: 61  -----------LVWAECVSHGRIEMKAKRVTIEVLEVGARNMFDEMSERS 88

[Close]
BLAST of CcUC09G168560 vs. NCBI nr
Match: KAF7804862.1 (UDP-glucuronic acid decarboxylase 2 [Senna tora])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-06
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 14  ALFLPFNRLFFFNLPKNRATVLASVIVTDTPARAHFVGLRLAVLENGDSDWMQRS 69
           ALFLP    + F+  +  +  L SVIVTDTPA AH +GL LAV ENG SDWM RS
Sbjct: 139 ALFLPLIAWYLFSFARCASIFLTSVIVTDTPALAHLLGLLLAVFENGVSDWMHRS 193

The following BLAST results are available for this feature:
BLAST of CcUC09G168560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030219.14.6e-1958.18Serine/arginine-rich-splicing factor SR34, partial [Cucurbita argyrosperma subsp... [more]
KAF7804862.11.5e-0658.18UDP-glucuronic acid decarboxylase 2 [Senna tora][more]
BLAST of CcUC09G168560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC09G168560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC09G168560 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G168560.1CcUC09G168560.1mRNA