CcUC09G167780 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G167780
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	bZIP transcription factor 53-like
Location	CicolChr09: 4375275 .. 4375676 (-)
RNA-Seq Expression	CcUC09G167780
Synteny	CcUC09G167780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCGTTCCTAGGGCAAATCAACACTTCAAACTCGCGAAACAAGATGATTGATCAATCGAATCGTGAATCCGCTCGACGATCGCGGATGAAAAAGCAAAAGCGATTTCAAGATCTAACAAGCGAAGTGAGACGTTTACAGATTGTGAATAGTCGAATTGTAGGAAGCGTCAACAGCGGGGAACAAGCGAGGATTGAAATTGAAACAATGAATAATCTTTTGAGAGTCGAAGCAATGGAAACGACGTACTAGCTCAGGGCCTTAGATTTGGTGCTTCAAATCATCGACGAAGCAAATGCTGTTGCGGCTGGTGTTTGTGACCCTTTGTTGGAACCTTGGCAACTCAACCAACGAAGGCAGCCGCCGCCGCCGGCGGATTACGATATGTTTCTTTTTTAA

mRNA sequence

ATGGCCTCGTTCCTAGGGCAAATCAACACTTCAAACTCGCGAAACAAGATGATTGATCAATCGAATCGTGAATCCGCTCGACGATCGCGGATGAAAAAGCAAAAGCGATTTCAAGATCTAACAAGCGAACTCAGGGCCTTAGATTTGGTGCTTCAAATCATCGACGAAGCAAATGCTGTTGCGGCTGGTGTTTGTGACCCTTTGTTGGAACCTTGGCAACTCAACCAACGAAGGCAGCCGCCGCCGCCGGCGGATTACGATATGTTTCTTTTTTAA

Coding sequence (CDS)

ATGGCCTCGTTCCTAGGGCAAATCAACACTTCAAACTCGCGAAACAAGATGATTGATCAATCGAATCGTGAATCCGCTCGACGATCGCGGATGAAAAAGCAAAAGCGATTTCAAGATCTAACAAGCGAACTCAGGGCCTTAGATTTGGTGCTTCAAATCATCGACGAAGCAAATGCTGTTGCGGCTGGTGTTTGTGACCCTTTGTTGGAACCTTGGCAACTCAACCAACGAAGGCAGCCGCCGCCGCCGGCGGATTACGATATGTTTCTTTTTTAA

Protein sequence

MASFLGQINTSNSRNKMIDQSNRESARRSRMKKQKRFQDLTSELRALDLVLQIIDEANAVAAGVCDPLLEPWQLNQRRQPPPPADYDMFLF

Homology

[Close]

BLAST of CcUC09G167780 vs. NCBI nr
Match: XP_038900030.1 (bZIP transcription factor 53-like [Benincasa hispida])

HSP 1 Score: 104.0 bits (258), Expect = 7.0e-19
Identity = 68/139 (48.92%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 1   MASFLGQINTSNSRNKMID-------QSNRESARRSRMKKQKRFQDLTSELR-------- 60
           M SFLGQIN S+SRN+MID       QSNRESARRSRMKKQKRF+DLTSE+R        
Sbjct: 1   MTSFLGQINISDSRNRMIDERKRKRMQSNRESARRSRMKKQKRFEDLTSEVRRLQNVNSR 60

Query: 61  ----------------------------------ALDLVLQIIDEANAVAAGVCDPLLEP 91
                                             ALDLVLQI+D+A+A+   V DPLLEP
Sbjct: 61  IVESINGREQARIEIESINNILRVEAMEMTYRLGALDLVLQIVDDADALGVDVRDPLLEP 120

[Close]

BLAST of CcUC09G167780 vs. NCBI nr
Match: KGN45565.2 (hypothetical protein Csa_016340 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 67/139 (48.20%), Postives = 74/139 (53.24%), Query Frame = 0


Query: 6   GQINTSNSRNKMID---------QSNRESARRSRMKKQKRFQDLTSE------------- 65
           GQINTS SRN+MID         QSNRESARRSRM+KQKRF++LT E             
Sbjct: 49  GQINTSGSRNRMIDDVKKKMKRMQSNRESARRSRMRKQKRFENLTREVRELQIVNSRIVE 108

Query: 66  -----------------------------LRALDLVLQIIDEANAVAAGVCDPLLEPWQL 91
                                        LRALDL+LQI D+AN V   V DP LEPWQL
Sbjct: 109 SVNGREEAMVEIESMNNFLRVEAIEMTCRLRALDLMLQIQDDANVVVVDVRDPWLEPWQL 168

[Close]

BLAST of CcUC09G167780 vs. NCBI nr
Match: XP_008451653.1 (PREDICTED: bZIP transcription factor 53-like [Cucumis melo] >KAA0046693.1 bZIP transcription factor 53-like [Cucumis melo var. makuwa] >TYK18229.1 bZIP transcription factor 53-like [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-15
Identity = 60/116 (51.72%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 20  QSNRESARRSRMKKQKRFQDLTSE------------------------------------ 79
           QSNRESARRSRM+KQKRF+DLTSE                                    
Sbjct: 13  QSNRESARRSRMRKQKRFEDLTSEVRELQIVNSRIVESVNGREEAMVEIESMNNFLRVEA 72

Query: 80  ------LRALDLVLQIIDEANAVAAGVCDPLLEPWQLNQRRQPPPP---ADYDMFL 91
                 LRALDLVLQI D+ANAVA  V DPLLEPWQLNQ++QPPPP   ADY  FL
Sbjct: 73  IEMTCRLRALDLVLQIQDDANAVAFDVRDPLLEPWQLNQQKQPPPPLMAADYGTFL 128

[Close]

BLAST of CcUC09G167780 vs. NCBI nr
Match: KAG7014344.1 (hypothetical protein SDJN02_24521, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-04
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 39  DLTSELRALDLVLQIIDEANAVAAGVCDPLLEPWQLNQRRQPPPPADYDMFLF 92
           + T++ RAL+ V+Q +D+ANA+A  V +PLLEPWQLN + Q P  ADY+   F
Sbjct: 85  ETTNQFRALNSVIQFVDDANALAVDVGNPLLEPWQLNLQMQ-PLAADYEKLTF 136

[Close]

BLAST of CcUC09G167780 vs. ExPASy TrEMBL
Match: A0A0A0K6D0 (BZIP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G407660 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 65/137 (47.45%), Postives = 72/137 (52.55%), Query Frame = 0


Query: 8   INTSNSRNKMID---------QSNRESARRSRMKKQKRFQDLTSE--------------- 67
           INTS SRN+MID         QSNRESARRSRM+KQKRF++LT E               
Sbjct: 97  INTSGSRNRMIDDVKKKMKRMQSNRESARRSRMRKQKRFENLTREVRELQIVNSRIVESV 156

Query: 68  ---------------------------LRALDLVLQIIDEANAVAAGVCDPLLEPWQLNQ 91
                                      LRALDL+LQI D+AN V   V DP LEPWQLNQ
Sbjct: 157 NGREEAMVEIESMNNFLRVEAIEMTCRLRALDLMLQIQDDANVVVVDVRDPWLEPWQLNQ 216

[Close]

BLAST of CcUC09G167780 vs. ExPASy TrEMBL
Match: A0A5D3D3X1 (BZIP transcription factor 53-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001690 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 60/116 (51.72%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 20  QSNRESARRSRMKKQKRFQDLTSE------------------------------------ 79
           QSNRESARRSRM+KQKRF+DLTSE                                    
Sbjct: 13  QSNRESARRSRMRKQKRFEDLTSEVRELQIVNSRIVESVNGREEAMVEIESMNNFLRVEA 72

Query: 80  ------LRALDLVLQIIDEANAVAAGVCDPLLEPWQLNQRRQPPPP---ADYDMFL 91
                 LRALDLVLQI D+ANAVA  V DPLLEPWQLNQ++QPPPP   ADY  FL
Sbjct: 73  IEMTCRLRALDLVLQIQDDANAVAFDVRDPLLEPWQLNQQKQPPPPLMAADYGTFL 128

[Close]

BLAST of CcUC09G167780 vs. ExPASy TrEMBL
Match: A0A1S3BS27 (bZIP transcription factor 53-like OS=Cucumis melo OX=3656 GN=LOC103492885 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 60/116 (51.72%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 20  QSNRESARRSRMKKQKRFQDLTSE------------------------------------ 79
           QSNRESARRSRM+KQKRF+DLTSE                                    
Sbjct: 13  QSNRESARRSRMRKQKRFEDLTSEVRELQIVNSRIVESVNGREEAMVEIESMNNFLRVEA 72

Query: 80  ------LRALDLVLQIIDEANAVAAGVCDPLLEPWQLNQRRQPPPP---ADYDMFL 91
                 LRALDLVLQI D+ANAVA  V DPLLEPWQLNQ++QPPPP   ADY  FL
Sbjct: 73  IEMTCRLRALDLVLQIQDDANAVAFDVRDPLLEPWQLNQQKQPPPPLMAADYGTFL 128

[Close]

BLAST of CcUC09G167780 vs. TAIR 10
Match: AT1G59530.1 (basic leucine-zipper 4 )

HSP 1 Score: 40.8 bits (94), Expect = 6.8e-04
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 21  SNRESARRSRMKKQKRFQDLTSELRALDLVLQIIDE--ANAVAAG 64
           SNRESA+RSRMKK+KRF++LT E+  L++  Q +    AN V+ G
Sbjct: 57  SNRESAKRSRMKKKKRFEELTEEVNRLNIRNQELKNRLANVVSCG 101

The following BLAST results are available for this feature:

BLAST of CcUC09G167780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900030.1	7.0e-19	48.92	bZIP transcription factor 53-like [Benincasa hispida]	[more]
KGN45565.2	1.5e-16	48.20	hypothetical protein Csa_016340 [Cucumis sativus]	[more]
XP_008451653.1	3.6e-15	51.72	PREDICTED: bZIP transcription factor 53-like [Cucumis melo] >KAA0046693.1 bZIP t...	[more]
KAG7014344.1	2.2e-04	50.94	hypothetical protein SDJN02_24521, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CcUC09G167780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC09G167780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6D0	1.0e-15	47.45	BZIP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G407660 PE=4 S...	[more]
A0A5D3D3X1	1.7e-15	51.72	BZIP transcription factor 53-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BS27	1.7e-15	51.72	bZIP transcription factor 53-like OS=Cucumis melo OX=3656 GN=LOC103492885 PE=4 S...	[more]

BLAST of CcUC09G167780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G59530.1	6.8e-04	53.33	basic leucine-zipper 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004827	Basic-leucine zipper domain	PFAM	PF00170	bZIP_1	coord: 20..48 e-value: 1.6E-6 score: 28.1
None	No IPR available	GENE3D	1.20.5.170		coord: 13..60 e-value: 1.1E-5 score: 27.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	CDD	cd14702	bZIP_plant_GBF1	coord: 20..47 e-value: 1.391E-8 score: 44.8322
None	No IPR available	SUPERFAMILY	57959	Leucine zipper domain	coord: 19..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G167780.1	CcUC09G167780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity