CcUC09G167580 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G167580
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA-directed RNA polymerase III subunit RPC8
Location	CicolChr09: 4166187 .. 4172766 (+)
RNA-Seq Expression	CcUC09G167580
Synteny	CcUC09G167580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCCTCTCTCTCTTCACACGTGCTCCACCTCCCCTCTCTCACTTTTCAGCTTTACTGCCGGCTCCCTCTCTTCTGCGCCGCCGCCGTATTTATCCGTTCCGTATCGCCGCGCCGCCTCCTTCGTAGCCGGCGTGTACTGGATATTTGACTCTATTGTTACCGGTATCCTCCCAAATTCCATCTATCTGTTTCCCTCTTCCTTTCTCTCTTTCTCTCTCTCTGGCTCTCACCAGCAGTCATCGAATCAGCCCCCGACTGCAAAAGACCTCTTTTTCAGGCATTACCTCACGCTCCTTCTCTCTATGATTCTTTCTCTCAAAACCCATCTTATTCTTCCTCAAAATTTTAGTCTTTAGAACACCCCCCATTTCCAAGTACGAAATCATTTGTCTTTTGGGTTTTGAAGAAAGAGGGAGAGAAGAACTAGCGACTGAATTCGAAGAATCTTCAAAATTCCTGGGTTTCTTCAATCTTTGGATTTGATTTCTGTCTTCTTTAACGGTAAGATTCACCATTGTTTTTATACTTGGGCATGAACTCTCTGTTTTTGTTGAATTGATCCGCCTGTTTTTCTGTTTGTACATTACTTAGTTCTCATTTGATTTATTTGTGTGTCATTTTGTTTGAAGTTTTAAGTAATTGCTTGCTTTCTCGTCTCTCTTGTTTTTCCCTTCTGCCGTTTGATAAATTTGGCTCTTTGAGTTTCTGCAATTGTAATTATTTGGATTTAGTTCTTGTGGGATAATTTTGTTTCTGTTTTATACCTTAGGTGGTGTGGATTGAAATTTCCCTCTCCCATACCCGTTTATGCCTTGCTCCAAATTTGTAGTGCTTTACATTGTTCCCCTTTGATGTTCTGCATTGGTTTCCTTTATCCAGAGCCTCAAGGATTGTGTTTTCGTTGGAACTATTAGCCTATAGAGAGCATCCAGATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCTTGCTTCATCTACCTATCCTTGATGCTATTAAGGGCGAGCTGGAGAAACTATTCTTAGATAAGGTTCGTGTAAATTTTGTATATAAACTTGTTGAGTAACCCTCTTCAATTTAGTGCCCTGGGATCAACACTTATAATGAGATGAGCTTTGTCATGAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCCGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCAAGCGATGGTGCTGCAACATACAAGGTATTCTTGCATTGTTGCATTCATCTTTAAAGATTGAACCATTACATTGAAGTCTTTTTTGTTACATGGTGTCCGTGCATCTGTGATATAATTCTATTTTTGGTTGGTTCAAAAGGGTCGTGGGTTTAATAAAAAACTTAGAGTGAATAGGTTTAATCTATGGTAACCACTTACCTAGGGTATAATTTGCTAGGAGTTTTATTGACTCCTAAATGTTGTTGGGTTAAACAGGTTGTCCTTGAGATTAGTCGAGATGCACGTAAGTCGTAAGCTAGTTCTAACACTCACGGATAACAAAATAAATTATAATTTTGGTATCTAACACATAAGATGTACTTCAATTACCAAGTACAAAAGGAATATCCATTTTTCAAAATCACATAATTTAAACTTTGGCCTCTTCTTTATCCATCAATTTTATGAACTATATTTGTCTTTTCAGTATTTTTGTCAATTGGAATCATAGGATTTTGTCAAAACTACATCAGGGTTACTTATTCATTGGAAATATGAGATCCTGAGTTTTATTTGTGGATGTTTTGGCAGGTTGTGTTCACATTGATTGTGTTTCGTCCATACGTGGGGGAGGTAATTATTGGAAAAGTTAAAGAATCAGATGAAAATGGTTTGCGAAGTATGTTAATTTCTTTTTTTTTTCAAACTTTCTTTCAGAATGTATATTTCTCCGTCAAGAATTGTTTTCCTTTGATTTGAGTGTCTTAGTCTAACACTTTGAACTAGGTGAGTAAGCGGTTTGGTTCGGCTCGGTTTTAGTAGAAAACCAAAACCAAACCAATTAATTGGTGAAAGAAACACAGCAACCGAAACTGAATCAGGTTCGTTAAGAATTCGAGCCAACCAAACCGCTTAGACCAGGTGTCTAGTCGGCTCATCCCTTGGTTCACCAAATACACAACATGTTGTGCCCGCACGAGAATGATCAAGGAACGAGAATAAATTGCAACACCTTTTTCCTGAATAAGAAGGAAATGTTGCACTTCCCCAAATTCGAACATGCGTCCTCATTGTATATACTTTATTGAGCGGCTCGTTTTTTCAATAGGATTTTTTTCTTCTAACTCGAAAGTGACCGAAAATTTTCGGTTTTTAATATTTTCAACCTGAAGCCGCCACACCAGTTGGCTTCATCTCGAACCGACGAGCAGTTCAAGCAATTTTACGGTTTCTCCTTGCACCCCTACTTTGAATCTTATCACATTTTTCTTCCTATTAAGGGTATGTTTAAGATTAGTCCTTCTGTATAAGTCTTTCAAGGCATTTGGTTCATTAGTGATTAGCTTAAGAGCTCTAACATTGATTTCCTAATGAGTTGTTTTGCTGATTGATACAACGGTCTAGATCTATATTCTCAATTCTTGGCAATGGGTTATTATGTCCTTTCCTTTTCAATTAATTTCCTTAGTTGAAATTTCTCTTGTATTATAAGTACCCATTATTGGGTCCTTTTGAAAAATAAGAAAAAATACAATATTTCTCCAAAACTACATGGTATCATAGCAAAACATTAGGTTTTGAAACCTTAGCCTCCACTTGCATTTCATCACCAGACAGCGTCAAAGTGCCGCCATTCATCATCTCTTCCACCCTCCATCAAGGTTTGTCTCAAAAGTCATTGCTTAGGTCAGAGCTCTGCGTTAAAGTTTCTTCTCGTTGTCGTCTGGGTCAAAACTCGCCGTCGTGGGTTTATTTTGTTGTTGGCCCAAGCTGCAAATCACAGTGGAAAGAAAAAATTCTCAAGATATAACCTAACCCTAGTCTAGTTGTCGTCGGCTGCTGTCCAGACCACTTGTGCTACGAGATTTGGATCCGTTCATGGATTTCGTTTTTTATGGGTTTCAGTTGTAGACCCGTAGACGCCTCAACCTGAAGATTGTGAAGCCACGATCTCTCATGCCGTCTCAGCAATTGTTCATGGAGTCAATTAGGTTCACATTGGTTCAGCCAGATCGGTTCAATCAGGCCAGTTCAACCAAACTAGTTCAATCAAGCCAGTTCAATCAGACTGGTTCAATTAGATCTGATTTCAAATCTACTCGTGGTGATATTGCGCTGTTCGCGGGCACCATTTTTTTTTTTTCAATTTCATTAGTTGAGTCAGTCAATCTCAATTAGTCAGTCTCTCCTATCATGTCAAAGCAGACAGTTACATTATCTACAAGTTTTGCTCATCAGGACATTGTCTTTCCTTGCTTCTCTATACAACACAATAAACAAAAATTGTTGATTGTGGATTCAGGAGCGTTCGATTTCATGACTGGTGACATCAATATTTTCCATTAGTCTAAATCACACCCTGGTCATTCGTCCATCCGAATAGTAGATGGATCTCTATCTGAAGTAACAGGAACAAGGTCAATAAAATTACCAAATGATCTCTTACTCTCCAATGTTCTTTATGTTCCTAAATTAAATTGTAACTTGATGTCAATAAGCAAACTTACGAGTGACTTGAATTGTCTATCTAAATTTCATTTGAACTTGTGTGAATTTCCGGAGTTGGGTTTGGGAAAGGTGATTGGCATTGCTAAGTAGCAAGATGGCCTCTATCTTTTTCAAGGAAGACATCTTCCAAGCTCGTCCTTCAACCCCATGTGTGAGTCTTCATCTAACTTTGTTAGTTTCTTTCTTGAGTACTCTTTTTGTTCGGTCTTTATCTAGTGAAAATCAAAGTTATGTTATGGCACTTTCACCTCGGACATCCAAATTTTTTGTATCTTGAAAGGTTGTTTCCTCATCTGTTCATTAAGAAAGAACCGAATCACTTTCACTACAAAATTTTTCAACTCTCCAACATACCAGAAATCCTATCCAAGTTTGCCCTATAAATCTTCAAAACCTTTTGCATTGATCCACAATGATATTTGGGGCCATCTGGAATCAAAAATATATCTAGAGCACGTTTTTTCATAACTTTTATTGATGACCATACTAGACCGATATGGACATTCCTCATGAAGGACAAATCCGAAACATCAAGTTTTTTTCAATCCGTTTACTCTATGATCTCCACTCAGTTTCAAAGTAGTATTCAAGTCCTCGAAACAGATAATGCTCGAGACTATTTCAATTCAATTCTTGGGTCATTTCTTTCATCTCATGGTATAGTTCACACTAGTTCATGTTTGGACACTCAACAAAATGGGATTGCTGCAAGGAAAAATAGTCACCTTCTTGAGGTCACTTGTTCTCTTATGATTGCCAGTAATGTTCCTAATTTGTTTTGGGGAGAAGCCCTTCTTACGGCAACTTTTCTCGTAAATCGAATGCCTAGTCAATCCTCAAATTCCAATATCCTCGATATGTCTTCCTCCAAATTCATTCCCAACTACAAAACTTTTCTTCAAATTTACCCTTTTTAATTAATTTCCTTAGTTGGAATTTCTCTTGTATCATAATTACCCATTATTGGGCCTTTTGAAAAATAAGAAAAAATACAATATTTCTCCAAAACTACAGTAATGTTAATGTTACTGCCTCCAAATCTGGTGGTTAATTGCATAAAGGGGATTCATACTTATACCACTCTTATAAGAACTTATATATTTATACCTATATACACAAGTACTTTGTTAGGTTTTTATGTTGATGATCCATAACATGCTTGAAAATTTGGTTTGGGTTTATGTCAGCTTGGATATTTAGATTTGGGTCAATTCTTTTGAAGTCTTTAGGAGTAACCTTAATCTTTTCATTTCTTGCTTTATAAACACAACATATGACAAATTGAGCATGGTGGTGATGGATGTTTGCTAATTTTGCAGTATCACTTGGATTTTTCGAGGACATTCATGTTCCTGTCCATCTTTTGCCCTCAAAATCTGAATTCACGCCAGACCCAAATAATGGGTAATGCTATCTCTGCAGCTCACAACCACCAACTAAAATTATAAATGGTGTTTCTGTTGAATGATAATTTTTATTGTTGATTTATCTAAGTATTATCTGTGACTATTCTTTTTGCGAGGATTGCAGTGGAAAACTCAGATGGGTGTGGGACTATGAAGGTGTACCGTGCGACATATATGAAACTGATGAGGTTTGTCAATTATGATAGGCTTAAATCCAGTGTTAGTCCTTAAATTTTATACTTATTTCATTTGGGTCCTTCAACTTTGAAATGTTCTGTTTTTGAACTTTGAAAAAGACCTACTCAATTTCTCTCTTTTTGAGAGCTTGGTAATTTTAAGAATCTAAATACAATAAGCACAAACATGAAGGGAAAAGTATGTGATGTATATTGTTGTGTAGTGATAATGTTGCGATCTATGAAGCACAAACACTCCATTTTAGGGGAAATGTATATCTGACATACTCTAGACATGTGTTTGACACGCAAATTTTTGTGGGGACACAGCTGGAATACTTATTGGACACTGTTAAGAAAATGTTTTAGAGCGAAAATGCTCGAGTCTTTTATGTTTGACCCAAATTTAAAGCTAAAGCAATTATATGTTAACAAAATAAAAGGAAAGCCCGTTTTCTTAACCAAAGATAAAAAAGGTAAGTACGAAAGAGTGTATTCCCAATGTGTCCATGTCCTAATTTTTTTGAAATTGGAATATCATCGTGTCTGTGCTTCTTAGGCTGCTTTAAAGTTTGAATTTTGGAGAGAGTGCATATGCTTAGTTTTGGTTTTTGGAAATGGCAGATAAGATTCAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGAGATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAAAACATCAATGTAAAAGCATTTGCTCCCATGATTGTTACTGTATGTAACTCACTCTCAACTTCTACCATTTCCTTTACTTTGTATTATTGATAAATGTGTTTGCGTTTGTAGCATTAGTCAGAGGAAGACTCATTTGTAGTAGGGTGTCAATGGCATATTATGACCATTCCCATTAAACAGCAATTATTTTGTGAATAAGGTCTATTGTTTTTTTGGGTGTAGGCAACAATTGACCATGATGGATTGGGTCCTCTTTCATGGTGGGATGGTTCGGGAGATGTCGAGGAGGAGGCCGAGGCTGAGGAAGATTCCTAAGATCAGTATCCCATTTAATGGGTATTCATTCATTCACATAATTATCATTTGGCATAGGCATTATAGACATGATAGTCACATATGATCAAGCGAGAAAAAGGTCCGCTTTTCACCTTTGTACTCGTAGCGTTGGTTAATTTTGATTATAGGTGTAAATACTACTTAACTTTAGCAGCTTTAATTCATGTACTTTAAAAAAAACGGCTTCTTTTGTCTTCGTACTGTCAAACAGTGTTCATTTAATAAACTAACCTTTCAGC

mRNA sequence

TCTTCCTCTCTCTCTTCACACGTGCTCCACCTCCCCTCTCTCACTTTTCAGCTTTACTGCCGGCTCCCTCTCTTCTGCGCCGCCGCCGTATTTATCCGTTCCGTATCGCCGCGCCGCCTCCTTCGTAGCCGGCGTGTACTGGATATTTGACTCTATTGTTACCGGTATCCTCCCAAATTCCATCTATCTGTTTCCCTCTTCCTTTCTCTCTTTCTCTCTCTCTGGCTCTCACCAGCAGTCATCGAATCAGCCCCCGACTGCAAAAGACCTCTTTTTCAGGCATTACCTCACGCTCCTTCTCTCTATGATTCTTTCTCTCAAAACCCATCTTATTCTTCCTCAAAATTTTAGTCTTTAGAACACCCCCCATTTCCAAGTACGAAATCATTTGTCTTTTGGGTTTTGAAGAAAGAGGGAGAGAAGAACTAGCGACTGAATTCGAAGAATCTTCAAAATTCCTGGGTTTCTTCAATCTTTGGATTTGATTTCTGTCTTCTTTAACGAGCCTCAAGGATTGTGTTTTCGTTGGAACTATTAGCCTATAGAGAGCATCCAGATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCTTGCTTCATCTACCTATCCTTGATGCTATTAAGGGCGAGCTGGAGAAACTATTCTTAGATAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCCGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCAAGCGATGGTGCTGCAACATACAAGGTTGTGTTCACATTGATTGTGTTTCGTCCATACGTGGGGGAGGTAATTATTGGAAAAGTTAAAGAATCAGATGAAAATGGTTTGCGAACGTCAAAGTGCCGCCATTCATCATCTCTTCCACCCTCCATCAAGACCCGTAGACGCCTCAACCTGAAGATTGTGAAGCCACGATCTCTCATGCCGTCTCAGCAATTGTTCATGGAGTCAATTAGGTTCACATTGGTTCAGCCAGATCGGTTCAATCAGGCCAGTTCAACCAAACTAGTTCAATCAAGCCAGTTCAATCAGACTGGTTCAATTAGATCTGATTTCAAATCTACTCGTGTATCACTTGGATTTTTCGAGGACATTCATGTTCCTGTCCATCTTTTGCCCTCAAAATCTGAATTCACGCCAGACCCAAATAATGGTGGAAAACTCAGATGGGTGTGGGACTATGAAGGTGTACCGTGCGACATATATGAAACTGATGAGATAAGATTCAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGAGATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAAAACATCAATGTAAAAGCATTTGCTCCCATGATTGTTACTGCAACAATTGACCATGATGGATTGGGTCCTCTTTCATGGTGGGATGGTTCGGGAGATGTCGAGGAGGAGGCCGAGGCTGAGGAAGATTCCTAAGATCAGTATCCCATTTAATGGGTATTCATTCATTCACATAATTATCATTTGGCATAGGCATTATAGACATGATAGTCACATATGATCAAGCGAGAAAAAGGTCCGCTTTTCACCTTTGTACTCGTAGCGTTGGTTAATTTTGATTATAGGTGTAAATACTACTTAACTTTAGCAGCTTTAATTCATGTACTTTAAAAAAAACGGCTTCTTTTGTCTTCGTACTGTCAAACAGTGTTCATTTAATAAACTAACCTTTCAGC

Coding sequence (CDS)

ATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCTTGCTTCATCTACCTATCCTTGATGCTATTAAGGGCGAGCTGGAGAAACTATTCTTAGATAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCCGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCAAGCGATGGTGCTGCAACATACAAGGTTGTGTTCACATTGATTGTGTTTCGTCCATACGTGGGGGAGGTAATTATTGGAAAAGTTAAAGAATCAGATGAAAATGGTTTGCGAACGTCAAAGTGCCGCCATTCATCATCTCTTCCACCCTCCATCAAGACCCGTAGACGCCTCAACCTGAAGATTGTGAAGCCACGATCTCTCATGCCGTCTCAGCAATTGTTCATGGAGTCAATTAGGTTCACATTGGTTCAGCCAGATCGGTTCAATCAGGCCAGTTCAACCAAACTAGTTCAATCAAGCCAGTTCAATCAGACTGGTTCAATTAGATCTGATTTCAAATCTACTCGTGTATCACTTGGATTTTTCGAGGACATTCATGTTCCTGTCCATCTTTTGCCCTCAAAATCTGAATTCACGCCAGACCCAAATAATGGTGGAAAACTCAGATGGGTGTGGGACTATGAAGGTGTACCGTGCGACATATATGAAACTGATGAGATAAGATTCAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGAGATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAAAACATCAATGTAAAAGCATTTGCTCCCATGATTGTTACTGCAACAATTGACCATGATGGATTGGGTCCTCTTTCATGGTGGGATGGTTCGGGAGATGTCGAGGAGGAGGCCGAGGCTGAGGAAGATTCCTAA

Protein sequence

MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS

Homology

[Close]

BLAST of CcUC09G167580 vs. NCBI nr
Match: XP_038897233.1 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_038897234.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_038897235.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_038897236.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida])

HSP 1 Score: 375.6 bits (963), Expect = 4.2e-100
Identity = 194/302 (64.24%), Postives = 213/302 (70.53%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPP+LLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPNLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           PSDGAATYKVVFTLIVFRP+VGEVIIGKVKES+  GL                       
Sbjct: 61  PSDGAATYKVVFTLIVFRPFVGEVIIGKVKESNAKGL----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                   R+SL
Sbjct: 121 --------------------------------------------------------RISL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAI 240
           GFFEDI+VPV LLPS S+F PD NNGGKLRWVW+Y+ VPCDIYETDEIRF+IHSI+YPAI
Sbjct: 181 GFFEDINVPVELLPSGSKFEPDLNNGGKLRWVWEYQDVPCDIYETDEIRFKIHSIDYPAI 223

Query: 241 PVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAE 300
           PVEQPKERDSKF MEE+P+ENINVKAFAPM++TATIDHDGLGP+SWW+G GDVE+E EAE
Sbjct: 241 PVEQPKERDSKFLMEEQPRENINVKAFAPMLITATIDHDGLGPISWWEGGGDVEDEVEAE 223

Query: 301 ED 303
           ++
Sbjct: 301 DE 223

[Close]

BLAST of CcUC09G167580 vs. NCBI nr
Match: XP_023547503.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo] >XP_023547504.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 371.3 bits (952), Expect = 7.9e-99
Identity = 193/304 (63.49%), Postives = 210/304 (69.08%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           PSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGL                       
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGL----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                   R+SL
Sbjct: 121 --------------------------------------------------------RISL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAI 240
           GFFEDI+VP+HLLPS SEF PDP NGGK RWVWDY+G P DIYETDEI+FRIHSI+YPAI
Sbjct: 181 GFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAI 225

Query: 241 PV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEA 300
           PV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSGD + +AEA
Sbjct: 241 PVDQQPNESNSKFQMEEQPKENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEA 225

Query: 301 EEDS 304
           EEDS
Sbjct: 301 EEDS 225

[Close]

BLAST of CcUC09G167580 vs. NCBI nr
Match: KAG7014295.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 368.6 bits (945), Expect = 5.1e-98
Identity = 192/304 (63.16%), Postives = 208/304 (68.42%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           PSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGL                       
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGL----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                   R+SL
Sbjct: 121 --------------------------------------------------------RISL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAI 240
           GFFEDI+VP+HLLPS SEF PDP NGGK RWVWDY+G P DIYETDEI+FRIHSI+YPAI
Sbjct: 181 GFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAI 225

Query: 241 PV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEA 300
           PV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSGD + E EA
Sbjct: 241 PVDQQPNESNSKFQMEEQPKENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADAEGEA 225

Query: 301 EEDS 304
           EEDS
Sbjct: 301 EEDS 225

[Close]

BLAST of CcUC09G167580 vs. NCBI nr
Match: XP_022954042.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata] >XP_022954043.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata])

HSP 1 Score: 365.2 bits (936), Expect = 5.6e-97
Identity = 193/306 (63.07%), Postives = 209/306 (68.30%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           PSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGL                       
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGL----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                   R+SL
Sbjct: 121 --------------------------------------------------------RISL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAI 240
           GFFEDI+VP+HLLPS SEF PDP NGGK RWVWDY+G P DIYETDEI+FRIHSI+YPAI
Sbjct: 181 GFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAI 227

Query: 241 PV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEA 300
           PV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSG  D + EA
Sbjct: 241 PVDQQPNESNSKFQMEEQPKENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEA 227

Query: 301 EAEEDS 304
           EAEEDS
Sbjct: 301 EAEEDS 227

[Close]

BLAST of CcUC09G167580 vs. NCBI nr
Match: XP_022991804.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima] >XP_022991805.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima])

HSP 1 Score: 364.0 bits (933), Expect = 1.3e-96
Identity = 193/308 (62.66%), Postives = 208/308 (67.53%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           PSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGL                       
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGL----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                   R+SL
Sbjct: 121 --------------------------------------------------------RISL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAI 240
           GFFEDI+VP+HLLPS SEF PDP N GK RWVWDY+G P DIYETDEI+FRIHSI+YP I
Sbjct: 181 GFFEDIYVPIHLLPSPSEFKPDPKNSGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPTI 229

Query: 241 PV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGD----VEE 300
           PV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSGD     E 
Sbjct: 241 PVDQQPNESNSKFQMEEQPKENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADAEAEA 229

Query: 301 EAEAEEDS 304
           EAEAEEDS
Sbjct: 301 EAEAEEDS 229

[Close]

BLAST of CcUC09G167580 vs. ExPASy Swiss-Prot
Match: Q9Y535 (DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens OX=9606 GN=POLR3H PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.1e-21
Identity = 78/291 (26.80%), Postives = 114/291 (39.18%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           P DGA+  KV F  +VF P++ E++IGK+K     G+                       
Sbjct: 61  PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGV----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                    VSL
Sbjct: 121 --------------------------------------------------------HVSL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGV--PCDIY--ETDEIRFRIHSIE 240
           GFF+DI +P   L   ++F     +  +  WVW+YE      D+Y    +EIRFR+    
Sbjct: 181 GFFDDILIPPESLQQPAKF-----DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDES 201

Query: 241 YPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW 288
           +       P   D+    EE PK+       AP  +  +I   GLG LSWW
Sbjct: 241 FVDTSPTGPSSADATTSSEELPKKE------APYTLVGSISEPGLGLLSWW 201

[Close]

BLAST of CcUC09G167580 vs. ExPASy Swiss-Prot
Match: Q9D2C6 (DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus OX=10090 GN=Polr3h PE=1 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 8.9e-21
Identity = 77/291 (26.46%), Postives = 114/291 (39.18%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           P DGA+  KV F  +VF P++ E++IGK+K     G+                       
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGV----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                    VSL
Sbjct: 121 --------------------------------------------------------HVSL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGV--PCDIY--ETDEIRFRIHSIE 240
           GFF+DI +P   L   ++F     +  +  WVW+YE      D+Y    +EIRFR+    
Sbjct: 181 GFFDDILIPPESLQQPAKF-----DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDES 201

Query: 241 YPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW 288
           +       P   ++    EE PK+       AP  +  +I   GLG LSWW
Sbjct: 241 FVDTSPTGPSSAEAASSSEELPKKE------APYTLVGSISEPGLGLLSWW 201

[Close]

BLAST of CcUC09G167580 vs. ExPASy Swiss-Prot
Match: Q2T9X1 (DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus OX=9913 GN=POLR3H PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-20
Identity = 76/294 (25.85%), Postives = 115/294 (39.12%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+R+PP      + D+I  EL K   +KV+ N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           P DGA+  KV F  +VF P++ E++IGK+K     G+                       
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGV----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                    VSL
Sbjct: 121 --------------------------------------------------------HVSL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGV--PCDIYET--DEIRFRIHSIE 240
           GFF+DI +P   L   ++F     +  +  WVW+YE      D+Y    +E+RFR+    
Sbjct: 181 GFFDDILIPPESLQQPAKF-----DEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDES 204

Query: 241 YPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGS 291
           +       P   ++    EE PK+       AP  +  +I   GLG LSWW  S
Sbjct: 241 FVDTSPTGPSSAEAASSSEELPKKE------APYTLMGSISEPGLGLLSWWTSS 204

[Close]

BLAST of CcUC09G167580 vs. ExPASy Swiss-Prot
Match: O94285 (DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc25 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.4e-18
Identity = 74/293 (25.26%), Postives = 114/293 (38.91%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF LSR    + + PS    P  +A+  E+ K + +KV+ N+GL I VYD   +  G I 
Sbjct: 1   MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
             DG++   VVF LI+FRP+ GEV++GK+K   E G+                       
Sbjct: 61  YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGI----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                   RV++
Sbjct: 121 --------------------------------------------------------RVTI 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVP----CDIY--ETDEIRFRIHS 240
            FF+DI +P  +L     F PD     +  WVW  EG       ++Y    +EIRF+I S
Sbjct: 181 SFFDDIFIPKDMLFDPCVFRPD-----ERAWVWKIEGEDGSEGTELYFDIDEEIRFQIES 202

Query: 241 IEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW 288
            ++  I  ++ K   +    E        +++ +P  + A+   DGLG  +WW
Sbjct: 241 EDFVDISPKRNKNATAITGTEA-------LESVSPYTLIASCSRDGLGIPAWW 202

[Close]

BLAST of CcUC09G167580 vs. ExPASy Swiss-Prot
Match: P35718 (DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC25 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.9e-16
Identity = 36/100 (36.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF LS+I   +R+PP   H   + AI  +L   F +K++ N+GLCI++YD+ +V+ G + 
Sbjct: 1   MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS 101
           P DG++   V F  +VF+P++GE++ G + +    G++ S
Sbjct: 61  PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVS 100

[Close]

BLAST of CcUC09G167580 vs. ExPASy TrEMBL
Match: A0A6J1GPX5 (DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita moschata OX=3662 GN=LOC111456422 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 2.7e-97
Identity = 193/306 (63.07%), Postives = 209/306 (68.30%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           PSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGL                       
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGL----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                   R+SL
Sbjct: 121 --------------------------------------------------------RISL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAI 240
           GFFEDI+VP+HLLPS SEF PDP NGGK RWVWDY+G P DIYETDEI+FRIHSI+YPAI
Sbjct: 181 GFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAI 227

Query: 241 PV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEA 300
           PV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSG  D + EA
Sbjct: 241 PVDQQPNESNSKFQMEEQPKENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEA 227

Query: 301 EAEEDS 304
           EAEEDS
Sbjct: 301 EAEEDS 227

[Close]

BLAST of CcUC09G167580 vs. ExPASy TrEMBL
Match: A0A6J1JVU8 (DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita maxima OX=3661 GN=LOC111488343 PE=3 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 6.1e-97
Identity = 193/308 (62.66%), Postives = 208/308 (67.53%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           PSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGL                       
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGL----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                   R+SL
Sbjct: 121 --------------------------------------------------------RISL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAI 240
           GFFEDI+VP+HLLPS SEF PDP N GK RWVWDY+G P DIYETDEI+FRIHSI+YP I
Sbjct: 181 GFFEDIYVPIHLLPSPSEFKPDPKNSGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPTI 229

Query: 241 PV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGD----VEE 300
           PV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSGD     E 
Sbjct: 241 PVDQQPNESNSKFQMEEQPKENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADAEAEA 229

Query: 301 EAEAEEDS 304
           EAEAEEDS
Sbjct: 301 EAEAEEDS 229

[Close]

BLAST of CcUC09G167580 vs. ExPASy TrEMBL
Match: A0A6J1DFX3 (DNA-directed RNA polymerase III subunit RPC8 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020040 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 5.7e-95
Identity = 194/307 (63.19%), Postives = 209/307 (68.08%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           PSDGAATYKVVFTLIVFRPYVGE+IIGKVKESD NGL                       
Sbjct: 61  PSDGAATYKVVFTLIVFRPYVGEIIIGKVKESDANGL----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                   R+SL
Sbjct: 121 --------------------------------------------------------RISL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAI 240
           GFFEDI+VP+HLLP+ SEF PD  NGGK RWVWDY+G P DIYETDEI+FRIH+IEYPAI
Sbjct: 181 GFFEDIYVPIHLLPTPSEFKPDSKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAI 228

Query: 241 PVEQPKERDSKFPMEE-KPKENI-NVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAE 300
           PVEQPKE + KF  EE +PKE+  NVKAFAPMIVT TID+DGLGP+SWWDGSGDV+ EAE
Sbjct: 241 PVEQPKESNEKFLTEEQQPKESTSNVKAFAPMIVTGTIDYDGLGPVSWWDGSGDVDPEAE 228

Query: 301 --AEEDS 304
             AEEDS
Sbjct: 301 VGAEEDS 228

[Close]

BLAST of CcUC09G167580 vs. ExPASy TrEMBL
Match: A0A5A7UWI5 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00020 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 9.7e-95
Identity = 187/303 (61.72%), Postives = 207/303 (68.32%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPSLL+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           PSDGAATYKVVFTLIVFRP+ GEVIIGKV+ES+ENGL                       
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGL----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                   R+SL
Sbjct: 121 --------------------------------------------------------RISL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAI 240
           GFFEDI+VPV L+PS SEFTPD NNGG+ RWVW Y  VP DIYE+DEI+F+IHSIEYPAI
Sbjct: 181 GFFEDIYVPVELMPSGSEFTPDENNGGRRRWVWIYNEVPFDIYESDEIKFKIHSIEYPAI 224

Query: 241 PVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAE 300
            VEQPKE +SKFPMEEKPKE+INVK FAPM++TA++D DGLGP+SWWDGSG+ E E E E
Sbjct: 241 LVEQPKESNSKFPMEEKPKESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEVE 224

Query: 301 EDS 304
           EDS
Sbjct: 301 EDS 224

[Close]

BLAST of CcUC09G167580 vs. ExPASy TrEMBL
Match: A0A1S3CEN6 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500005 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 9.7e-95
Identity = 187/303 (61.72%), Postives = 207/303 (68.32%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPSLL+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           PSDGAATYKVVFTLIVFRP+ GEVIIGKV+ES+ENGL                       
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGL----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                   R+SL
Sbjct: 121 --------------------------------------------------------RISL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAI 240
           GFFEDI+VPV L+PS SEFTPD NNGG+ RWVW Y  VP DIYE+DEI+F+IHSIEYPAI
Sbjct: 181 GFFEDIYVPVELMPSGSEFTPDENNGGRRRWVWIYNEVPFDIYESDEIKFKIHSIEYPAI 224

Query: 241 PVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAE 300
            VEQPKE +SKFPMEEKPKE+INVK FAPM++TA++D DGLGP+SWWDGSG+ E E E E
Sbjct: 241 LVEQPKESNSKFPMEEKPKESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEVE 224

Query: 301 EDS 304
           EDS
Sbjct: 301 EDS 224

[Close]

BLAST of CcUC09G167580 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 210.7 bits (535), Expect = 1.7e-54
Identity = 117/299 (39.13%), Postives = 156/299 (52.17%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLS +EH+LRVPP LL+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           P DGAATYKV   ++VFRP+VGEVI  K KESD NGL                       
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGL----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                   R++L
Sbjct: 121 --------------------------------------------------------RLTL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETD---EIRFRIHSIEY 240
           GFF+DI+VP  L+P  +   PDP N  ++ WVW+Y G P + Y  D   +I+FR+ SI Y
Sbjct: 181 GFFDDIYVPAPLMPKPNRCEPDPYNRKQMIWVWEY-GEPKEDYIVDDACQIKFRVESISY 203

Query: 241 PAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEE 297
           P++P E+ ++                 K FAPM+VT  +D DGLGP+SWWD    V++E
Sbjct: 241 PSVPTERAED----------------AKPFAPMVVTGNMDDDGLGPVSWWDSYEQVDQE 203

[Close]

BLAST of CcUC09G167580 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-46
Identity = 105/278 (37.77%), Postives = 141/278 (50.72%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLS +EH+LRVPP LL+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPPSIKTRRRLNL 120
           P DGAATYKV   ++VFRP+VGEVI  K KESD NGL                       
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGL----------------------- 120

Query: 121 KIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSL 180
                                                                   R++L
Sbjct: 121 --------------------------------------------------------RLTL 180

Query: 181 GFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETD---EIRFRIHSIEY 240
           GFF+DI+VP  L+P  +   PDP N  ++ WVW+Y G P + Y  D   +I+FR+ SI Y
Sbjct: 181 GFFDDIYVPAPLMPKPNRCEPDPYNRKQMIWVWEY-GEPKEDYIVDDACQIKFRVESISY 182

Query: 241 PAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTAT 276
           P++P E+ ++                 K FAPM+VT +
Sbjct: 241 PSVPTERAED----------------AKPFAPMVVTVS 182

The following BLAST results are available for this feature:

BLAST of CcUC09G167580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897233.1	4.2e-100	64.24	DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_...	[more]
XP_023547503.1	7.9e-99	63.49	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
KAG7014295.1	5.1e-98	63.16	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argy...	[more]
XP_022954042.1	5.6e-97	63.07	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata] >XP_022954043....	[more]
XP_022991804.1	1.3e-96	62.66	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima] >XP_022991805.1 ...	[more]

BLAST of CcUC09G167580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y535	3.1e-21	26.80	DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens OX=9606 GN=POLR3H P...	[more]
Q9D2C6	8.9e-21	26.46	DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus OX=10090 GN=Polr3h ...	[more]
Q2T9X1	2.0e-20	25.85	DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus OX=9913 GN=POLR3H PE=...	[more]
O94285	2.4e-18	25.26	DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strai...	[more]
P35718	3.9e-16	36.00	DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain...	[more]

BLAST of CcUC09G167580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPX5	2.7e-97	63.07	DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JVU8	6.1e-97	62.66	DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1DFX3	5.7e-95	63.19	DNA-directed RNA polymerase III subunit RPC8 isoform X2 OS=Momordica charantia O...	[more]
A0A5A7UWI5	9.7e-95	61.72	DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo var. mak...	[more]
A0A1S3CEN6	9.7e-95	61.72	DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo OX=3656 ...	[more]

BLAST of CcUC09G167580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06790.1	1.7e-54	39.13	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT1G06790.2	3.7e-46	37.77	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 8..64 e-value: 2.2E-10 score: 40.6
IPR013238	RNA polymerase III, subunit Rpc25	PFAM	PF08292	RNA_pol_Rbc25	coord: 172..287 e-value: 4.2E-18 score: 65.8
None	No IPR available	GENE3D	2.40.50.140		coord: 165..288 e-value: 1.5E-23 score: 85.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 283..303
None	No IPR available	PANTHER	PTHR12709:SF9	BNAC08G44960D PROTEIN	coord: 1..100 coord: 170..296
None	No IPR available	CDD	cd04330	RNAP_III_Rpc25_N	coord: 2..81 e-value: 9.38011E-37 score: 124.243
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 1..79 e-value: 4.1E-25 score: 89.9
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..78
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..100 coord: 170..296

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G167580.1	CcUC09G167580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity