CcUC09G167000 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G167000
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Histone H3.2
Location	CicolChr09: 3756741 .. 3757465 (-)
RNA-Seq Expression	CcUC09G167000
Synteny	CcUC09G167000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGCAAGGAAAAGGCGGGGAAATTTCCACGTGGCAGAATGCTATTGTATAGTCAGTTTAGCCACGGATAGCAATCCTTGAAACAGAATAATAAGTTGAATCTGACCGCCCAAATACCGAGCATCTAACAGTCTCCATTCACACTGATTAAAAAGCGAACCCACCAAATTTCCCCCAAAATTTAAAATCTCCCGCTTTTCTTGTGGTAGCAAACCCTATATCTCCTTCTCCAAACCCTCGAAGGTTCTTCATCTCTCGATCGAACCTTCCCACTTCAGAACTCAAATCTCCCAACCTTTGTTTTACCAATTCGCCCGAATGGCTCGCACCAAGCAAACCGCCAGAAAGTCCACCGGAGGCAAGGCCCCCAGAAAGCAACTCGCCACCAAAGCCGCCCGGAAGTCAGCTCCGGCCACCGGTGGGGTGAAGAAACCCCACCGCTTCCGCCCTGGAACCGTCGCACTTCGTGAAATCAGGAAGTACCAAAAGAGTACTGAGCTATTGATCCGAAAGCTTCCCTTCCAGCGTTTGGTTCGTGAAATTGCTCAAGATTTCAAGACCGATCTGAGGTTCCAGAGCAGCGCTGTCGCGGCCCTTCAGGAAGCGGCGGAGGCGTACTTGGTTGGTCTGTTTGAGGATACGAATCTGTGTGCGATTCATGCTAAGAGGGTTACCATTATGCCTAAGGATATTCAATTGGCAAGGAGGATTAGAGGAGAAAGGGCT

mRNA sequence

TAGCAAGGAAAAGGCGGGGAAATTTCCACGTGGCAGAATGCTATTCAAACCCTATATCTCCTTCTCCAAACCCTCGAAGGTTCTTCATCTCTCGATCGAACCTTCCCACTTCAGAACTCAAATCTCCCAACCTTTGTTTTACCAATTCGCCCGAATGGCTCGCACCAAGCAAACCGCCAGAAAGTCCACCGGAGGCAAGGCCCCCAGAAAGCAACTCGCCACCAAAGCCGCCCGGAAGTCAGCTCCGGCCACCGGTGGGGTGAAGAAACCCCACCGCTTCCGCCCTGGAACCGTCGCACTTCGTGAAATCAGGAAGTACCAAAAGAGTACTGAGCTATTGATCCGAAAGCTTCCCTTCCAGCGTTTGGTTCGTGAAATTGCTCAAGATTTCAAGACCGATCTGAGGTTCCAGAGCAGCGCTGTCGCGGCCCTTCAGGAAGCGGCGGAGGCGTACTTGGTTGGTCTGTTTGAGGATACGAATCTGTGTGCGATTCATGCTAAGAGGGTTACCATTATGCCTAAGGATATTCAATTGGCAAGGAGGATTAGAGGAGAAAGGGCT

Coding sequence (CDS)

ATGCTATTCAAACCCTATATCTCCTTCTCCAAACCCTCGAAGGTTCTTCATCTCTCGATCGAACCTTCCCACTTCAGAACTCAAATCTCCCAACCTTTGTTTTACCAATTCGCCCGAATGGCTCGCACCAAGCAAACCGCCAGAAAGTCCACCGGAGGCAAGGCCCCCAGAAAGCAACTCGCCACCAAAGCCGCCCGGAAGTCAGCTCCGGCCACCGGTGGGGTGAAGAAACCCCACCGCTTCCGCCCTGGAACCGTCGCACTTCGTGAAATCAGGAAGTACCAAAAGAGTACTGAGCTATTGATCCGAAAGCTTCCCTTCCAGCGTTTGGTTCGTGAAATTGCTCAAGATTTCAAGACCGATCTGAGGTTCCAGAGCAGCGCTGTCGCGGCCCTTCAGGAAGCGGCGGAGGCGTACTTGGTTGGTCTGTTTGAGGATACGAATCTGTGTGCGATTCATGCTAAGAGGGTTACCATTATGCCTAAGGATATTCAATTGGCAAGGAGGATTAGAGGAGAAAGGGCT

Protein sequence

MLFKPYISFSKPSKVLHLSIEPSHFRTQISQPLFYQFARMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Homology

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BLAST of CcUC09G167000 vs. NCBI nr
Match: XP_008461433.1 (PREDICTED: histone H3.v1-like [Cucumis melo])

HSP 1 Score: 302.0 bits (772), Expect = 3.4e-78
Identity = 162/173 (93.64%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 3   FKPYISFSKPSKVLHLSIEPSHFRTQISQPLFYQFARMARTKQTARKSTGGKAPRKQLAT 62
           +KPYIS +KPSK LH SIE S+FRTQI Q L YQF RMARTKQTARKSTGGKAPRKQLAT
Sbjct: 159 WKPYISITKPSKFLHRSIESSNFRTQIFQFLLYQFPRMARTKQTARKSTGGKAPRKQLAT 218

Query: 63  KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL 122
           KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL
Sbjct: 219 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL 278

Query: 123 RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 176
           RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 279 RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 331

[Close]

BLAST of CcUC09G167000 vs. NCBI nr
Match: XP_023514535.1 (histone H3.2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.2 bits (674), Expect = 7.8e-67
Identity = 146/165 (88.48%), Postives = 150/165 (90.91%), Query Frame = 0


Query: 16  LHLSIEPSHFRT-----QISQPLFYQFARMARTKQTARKSTGGKAPRKQLATKAARKSAP 75
           +HL I   H ++     Q  Q L +QF RMARTKQTARKSTGGKAPRKQLATKAARKSAP
Sbjct: 63  VHLQISIRHNQSLRSHYQNLQILSFQFTRMARTKQTARKSTGGKAPRKQLATKAARKSAP 122

Query: 76  ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVA 135
           ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVA
Sbjct: 123 ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVA 182

Query: 136 ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 176
           ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 183 ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 227

[Close]

BLAST of CcUC09G167000 vs. NCBI nr
Match: XP_031745108.1 (histone H3-like centromeric protein CSE4 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-65
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 37  FARMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQK 96
           FARMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQK
Sbjct: 137 FARMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQK 196

Query: 97  STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKR 156
           STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKR
Sbjct: 197 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKR 256

Query: 157 VTIMPKDIQLARRIRGERA 176
           VTIMPKDIQLARRIRGERA
Sbjct: 257 VTIMPKDIQLARRIRGERA 275

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BLAST of CcUC09G167000 vs. NCBI nr
Match: XP_024984112.1 (histone H3-like centromeric protein cpar-1 [Cynara cardunculus var. scolymus])

HSP 1 Score: 259.6 bits (662), Expect = 1.9e-65
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 35  YQFARMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKY 94
           Y F+ MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKY
Sbjct: 149 YNFSSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKY 208

Query: 95  QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHA 154
           QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHA
Sbjct: 209 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHA 268

Query: 155 KRVTIMPKDIQLARRIRGERA 176
           KRVTIMPKDIQLARRIRGERA
Sbjct: 269 KRVTIMPKDIQLARRIRGERA 289

[Close]

BLAST of CcUC09G167000 vs. NCBI nr
Match: AQK43641.1 (Histone H3.2 [Zea mays])

HSP 1 Score: 259.2 bits (661), Expect = 2.5e-65
Identity = 142/162 (87.65%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 16  LHLSIEPSHFRT--QISQPLFYQFARMARTKQTARKSTGGKAPRKQLATKAARKSAPATG 75
           +H S   S+F++  + + P   Q + MARTKQTARKSTGGKAPRKQLATKAARKSAPATG
Sbjct: 10  IHSSHPISNFKSFDRAAPPALSQLSPMARTKQTARKSTGGKAPRKQLATKAARKSAPATG 69

Query: 76  GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQ 135
           GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQ
Sbjct: 70  GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQ 129

Query: 136 EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 176
           EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 130 EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 171

[Close]

BLAST of CcUC09G167000 vs. ExPASy Swiss-Prot
Match: P59226 (Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2)

HSP 1 Score: 255.0 bits (650), Expect = 6.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 40  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 99
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 100 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 159
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 160 MPKDIQLARRIRGERA 176
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of CcUC09G167000 vs. ExPASy Swiss-Prot
Match: Q6LBE3 (Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3)

HSP 1 Score: 255.0 bits (650), Expect = 6.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 40  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 99
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 100 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 159
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 160 MPKDIQLARRIRGERA 176
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of CcUC09G167000 vs. ExPASy Swiss-Prot
Match: Q6LCK1 (Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3)

HSP 1 Score: 255.0 bits (650), Expect = 6.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 40  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 99
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 100 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 159
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 160 MPKDIQLARRIRGERA 176
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of CcUC09G167000 vs. ExPASy Swiss-Prot
Match: Q71T45 (Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3)

HSP 1 Score: 255.0 bits (650), Expect = 6.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 40  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 99
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 100 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 159
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 160 MPKDIQLARRIRGERA 176
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of CcUC09G167000 vs. ExPASy Swiss-Prot
Match: P69246 (Histone H3.2 OS=Zea mays OX=4577 GN=H3C2 PE=1 SV=2)

HSP 1 Score: 255.0 bits (650), Expect = 6.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 40  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 99
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 100 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 159
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 160 MPKDIQLARRIRGERA 176
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of CcUC09G167000 vs. ExPASy TrEMBL
Match: A0A1S3CEM6 (Histone H3.2 OS=Cucumis melo OX=3656 GN=LOC103500030 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.6e-78
Identity = 162/173 (93.64%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 3   FKPYISFSKPSKVLHLSIEPSHFRTQISQPLFYQFARMARTKQTARKSTGGKAPRKQLAT 62
           +KPYIS +KPSK LH SIE S+FRTQI Q L YQF RMARTKQTARKSTGGKAPRKQLAT
Sbjct: 159 WKPYISITKPSKFLHRSIESSNFRTQIFQFLLYQFPRMARTKQTARKSTGGKAPRKQLAT 218

Query: 63  KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL 122
           KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL
Sbjct: 219 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL 278

Query: 123 RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 176
           RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 279 RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 331

[Close]

BLAST of CcUC09G167000 vs. ExPASy TrEMBL
Match: K7U3E1 (Histone H3.2 OS=Zea mays OX=4577 GN=103638044 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.2e-65
Identity = 142/162 (87.65%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 16  LHLSIEPSHFRT--QISQPLFYQFARMARTKQTARKSTGGKAPRKQLATKAARKSAPATG 75
           +H S   S+F++  + + P   Q + MARTKQTARKSTGGKAPRKQLATKAARKSAPATG
Sbjct: 10  IHSSHPISNFKSFDRAAPPALSQLSPMARTKQTARKSTGGKAPRKQLATKAARKSAPATG 69

Query: 76  GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQ 135
           GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQ
Sbjct: 70  GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQ 129

Query: 136 EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 176
           EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 130 EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 171

[Close]

BLAST of CcUC09G167000 vs. ExPASy TrEMBL
Match: A0A453BYM5 (Histone domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.6e-65
Identity = 143/166 (86.14%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 11  KPSKVLHLSI-EPSHFRTQISQPLFYQFARMARTKQTARKSTGGKAPRKQLATKAARKSA 70
           +P++  H +I EPS  +   + P F++   MARTKQTARKSTGGKAPRKQLATKAARKSA
Sbjct: 72  EPTQQSHRAILEPS--KLLPASPRFHRVPPMARTKQTARKSTGGKAPRKQLATKAARKSA 131

Query: 71  PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV 130
           PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV
Sbjct: 132 PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV 191

Query: 131 AALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 176
           +ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 192 SALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 235

[Close]

BLAST of CcUC09G167000 vs. ExPASy TrEMBL
Match: A0A6J1DM01 (Histone H3.2 OS=Momordica charantia OX=3673 GN=LOC111021800 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.1e-65
Identity = 140/146 (95.89%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 30  SQPLFYQFARMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR 89
           S  L   F RMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR
Sbjct: 213 SSNLHNPFDRMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR 272

Query: 90  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL 149
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL
Sbjct: 273 EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL 332

Query: 150 CAIHAKRVTIMPKDIQLARRIRGERA 176
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 333 CAIHAKRVTIMPKDIQLARRIRGERA 358

[Close]

BLAST of CcUC09G167000 vs. ExPASy TrEMBL
Match: A0A6J0MQA6 (histone H3-like centromeric protein CSE4 OS=Raphanus sativus OX=3726 GN=LOC108845648 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.1e-65
Identity = 144/165 (87.27%), Postives = 149/165 (90.30%), Query Frame = 0


Query: 11  KPSKVLHLSIEPSHFRTQISQPLFYQFARMARTKQTARKSTGGKAPRKQLATKAARKSAP 70
           + + +LH S  P HF    S+ +   F  MARTKQTARKSTGGKAPRKQLATKAARKSAP
Sbjct: 135 RQTHLLHHSSSP-HFSLTFSREVTSNF-DMARTKQTARKSTGGKAPRKQLATKAARKSAP 194

Query: 71  ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVA 130
           ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVA
Sbjct: 195 ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVA 254

Query: 131 ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 176
           ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 255 ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 297

[Close]

BLAST of CcUC09G167000 vs. TAIR 10
Match: AT1G09200.1 (Histone superfamily protein )

HSP 1 Score: 255.0 bits (650), Expect = 4.4e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 40  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 99
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 100 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 159
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 160 MPKDIQLARRIRGERA 176
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of CcUC09G167000 vs. TAIR 10
Match: AT3G27360.1 (Histone superfamily protein )

HSP 1 Score: 255.0 bits (650), Expect = 4.4e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 40  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 99
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 100 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 159
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 160 MPKDIQLARRIRGERA 176
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of CcUC09G167000 vs. TAIR 10
Match: AT5G10390.1 (Histone superfamily protein )

HSP 1 Score: 255.0 bits (650), Expect = 4.4e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 40  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 99
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 100 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 159
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 160 MPKDIQLARRIRGERA 176
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of CcUC09G167000 vs. TAIR 10
Match: AT5G10400.1 (Histone superfamily protein )

HSP 1 Score: 255.0 bits (650), Expect = 4.4e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 40  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 99
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 100 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 159
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 160 MPKDIQLARRIRGERA 176
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of CcUC09G167000 vs. TAIR 10
Match: AT5G65360.1 (Histone superfamily protein )

HSP 1 Score: 255.0 bits (650), Expect = 4.4e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 40  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 99
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 100 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 159
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 160 MPKDIQLARRIRGERA 176
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of CcUC09G167000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461433.1	3.4e-78	93.64	PREDICTED: histone H3.v1-like [Cucumis melo]	[more]
XP_023514535.1	7.8e-67	88.48	histone H3.2-like [Cucurbita pepo subsp. pepo]	[more]
XP_031745108.1	1.1e-65	100.00	histone H3-like centromeric protein CSE4 [Cucumis sativus]	[more]
XP_024984112.1	1.9e-65	97.87	histone H3-like centromeric protein cpar-1 [Cynara cardunculus var. scolymus]	[more]
AQK43641.1	2.5e-65	87.65	Histone H3.2 [Zea mays]	[more]

BLAST of CcUC09G167000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P59226	6.2e-67	100.00	Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2	[more]
Q6LBE3	6.2e-67	100.00	Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3	[more]
Q6LCK1	6.2e-67	100.00	Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3	[more]
Q71T45	6.2e-67	100.00	Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3	[more]
P69246	6.2e-67	100.00	Histone H3.2 OS=Zea mays OX=4577 GN=H3C2 PE=1 SV=2	[more]

BLAST of CcUC09G167000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CEM6	1.6e-78	93.64	Histone H3.2 OS=Cucumis melo OX=3656 GN=LOC103500030 PE=3 SV=1	[more]
K7U3E1	1.2e-65	87.65	Histone H3.2 OS=Zea mays OX=4577 GN=103638044 PE=3 SV=1	[more]
A0A453BYM5	1.6e-65	86.14	Histone domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200...	[more]
A0A6J1DM01	2.1e-65	95.89	Histone H3.2 OS=Momordica charantia OX=3673 GN=LOC111021800 PE=3 SV=1	[more]
A0A6J0MQA6	2.1e-65	87.27	histone H3-like centromeric protein CSE4 OS=Raphanus sativus OX=3726 GN=LOC10884...	[more]

BLAST of CcUC09G167000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09200.1	4.4e-68	100.00	Histone superfamily protein	[more]
AT3G27360.1	4.4e-68	100.00	Histone superfamily protein	[more]
AT5G10390.1	4.4e-68	100.00	Histone superfamily protein	[more]
AT5G10400.1	4.4e-68	100.00	Histone superfamily protein	[more]
AT5G65360.1	4.4e-68	100.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 137..153 score: 96.93 coord: 153..174 score: 94.86 coord: 97..114 score: 97.46 coord: 42..56 score: 97.1 coord: 119..137 score: 85.01 coord: 73..94 score: 89.33 coord: 56..70 score: 92.32
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 73..175 e-value: 8.4E-74 score: 261.2
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 25..175
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 106..114
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 54..60
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 41..175 e-value: 3.6E-75 score: 252.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 41..172
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 40..171 e-value: 2.6E-53 score: 179.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..79
None	No IPR available	PANTHER	PTHR11426:SF198	SUBFAMILY NOT NAMED	coord: 25..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G167000.1	CcUC09G167000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity