CcUC09G166650 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G166650
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	60S acidic ribosomal protein family
Location	CicolChr09: 3480107 .. 3480931 (+)
RNA-Seq Expression	CcUC09G166650
Synteny	CcUC09G166650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAAAATGGTTCTTAAAATTAGGCCGGTGACTCATGTTTATGGATTTGGTAGAAATGGCAAAATCTTTAAGCCCAGCCCAATTTCACTAGTGGATTTAAAAGAAAAAGTCGAATATACCCCACGAATTTGATTCACTTCATGCCCACTTCTTTGTGTTCGCGAAATTTTAGGATTGCTTCCCAATTTTCCTTTTCTCCATGCACATACTTTAGGAAGAAAAAATCTCCATTTTCGATTGGTATGTTCTTTTCCCCTTTCGCCCTTTCGCCCTTTCTTTATTCATGTTTTTGTGTTTGATTCCAACCGTTTCTTTTCTTATTAAAGATTTGTAGAGGATGAAGGTTGTTGCAGCTTATTTGTTGGTTGTTTTGGGTGGAAATACTTACCATTCCATTGATGAAAGTAAAGTTATTGTCGGCTCTCGTATTTTTCATATTTCAACTTTTTAATTTGGTAATTTTAGATTCTGTAGGGTCTTTTTTATTGGGTCTTCGTATTGTTCTTTGTGTATCAATTATTCCGAAATTAGGTAGGAAAACGAACAATAACATAGAGAAATTAGGTTTAGGGTTTGTATGGTGCTTTGATTTGAATGAAGTTCATACACTAAAATTGAATTGATGGGGCATATATTAACAGTTAGAGTTGAGGTTGAAGATGAAAGAATTGAGTTGCTTCTTTCCCAAGTAGTTTACCTTTTATTTTCGATTTTATTTTCATAAGCAGTTTCTAATAATTTCTCTATTTCTTTTAGTTTGTTGAAAATAAAATGCAAACGAGGAAAATTTCACACGATAAACCTGAAGTGAAGAATGAATGA

mRNA sequence

ATGTCAAAAAGGATGAAGGTTGTTGCAGCTTATTTGTTGGTTGTTTTGGGTGGAAATACTTACCATTCCATTGATGAAAGTAAAGTTATTGTCGGCTCTCTTAGAGTTGAGGTTGAAGATGAAAGAATTGAGTTGCTTCTTTCCCAATTTGTTGAAAATAAAATGCAAACGAGGAAAATTTCACACGATAAACCTGAAGTGAAGAATGAATGA

Coding sequence (CDS)

ATGTCAAAAAGGATGAAGGTTGTTGCAGCTTATTTGTTGGTTGTTTTGGGTGGAAATACTTACCATTCCATTGATGAAAGTAAAGTTATTGTCGGCTCTCTTAGAGTTGAGGTTGAAGATGAAAGAATTGAGTTGCTTCTTTCCCAATTTGTTGAAAATAAAATGCAAACGAGGAAAATTTCACACGATAAACCTGAAGTGAAGAATGAATGA

Protein sequence

MSKRMKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQFVENKMQTRKISHDKPEVKNE

Homology

[Close]

BLAST of CcUC09G166650 vs. NCBI nr
Match: XP_023543240.1 (60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.9 bits (154), Expect = 6.2e-07
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MK+VAAYLL VLGGNT+ S+++   I+GS+ +EVEDERIELLLSQ
Sbjct: 1  MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQ 45

[Close]

BLAST of CcUC09G166650 vs. NCBI nr
Match: XP_022925971.1 (60S acidic ribosomal protein P2-like [Cucurbita moschata] >XP_022925973.1 60S acidic ribosomal protein P2-like [Cucurbita moschata] >KAG7034513.1 hypothetical protein SDJN02_04243 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.9 bits (154), Expect = 6.2e-07
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MK+VAAYLL VLGGNT+ S+++   I+GS+ +EVEDERIELLLSQ
Sbjct: 1  MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQ 45

[Close]

BLAST of CcUC09G166650 vs. NCBI nr
Match: MBA0644904.1 (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 63.5 bits (153), Expect = 8.1e-07
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MKVVAAYLL VLGGN  HS D+ KVI+GS+ VE +D+RIELLLS+
Sbjct: 1  MKVVAAYLLAVLGGNASHSADDLKVILGSVGVEADDDRIELLLSE 45

[Close]

BLAST of CcUC09G166650 vs. NCBI nr
Match: KAG6604363.1 (hypothetical protein SDJN03_04972, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MK+VAAYLL VLGGNT+ S+++   I+GS+ +EV+DERIELLLSQ
Sbjct: 24 MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVDDERIELLLSQ 68

[Close]

BLAST of CcUC09G166650 vs. NCBI nr
Match: XP_022143771.1 (60S acidic ribosomal protein P2A-like [Momordica charantia] >XP_022143773.1 60S acidic ribosomal protein P2A-like [Momordica charantia] >XP_022143774.1 60S acidic ribosomal protein P2A-like [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MK+VAAYLL VLGGN   S+D  K I+GS+ VEVED+RIELLLSQ
Sbjct: 1  MKIVAAYLLAVLGGNNSPSVDHIKAILGSVGVEVEDDRIELLLSQ 45

[Close]

BLAST of CcUC09G166650 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.6e-05
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MKV+AAYLL VLGGNT  + D+ K I+ S+  E ++E++E LL++
Sbjct: 1  MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTE 45

[Close]

BLAST of CcUC09G166650 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.0e-05
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MKV+AA+LL +LGGNT  + ++ K I+ S+  + +D++IELLLSQ
Sbjct: 1  MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQ 45

[Close]

BLAST of CcUC09G166650 vs. ExPASy Swiss-Prot
Match: Q9LXM8 (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-04
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MKV AA+LL VLGGN   S D  K I+G++  +V+ E IELLL +
Sbjct: 1  MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKE 45

[Close]

BLAST of CcUC09G166650 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-04
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MK VAAYLL VL GN   S D+   I+ S+  EV++E++ELLLSQ
Sbjct: 1  MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQ 45

[Close]

BLAST of CcUC09G166650 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.1e-04
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MKVVAAYLL VL G    +  + K I+GS+  E ED +IELLL +
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKE 45

[Close]

BLAST of CcUC09G166650 vs. ExPASy TrEMBL
Match: A0A6J1EDL3 (60S acidic ribosomal protein P2-like OS=Cucurbita moschata OX=3662 GN=LOC111433228 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MK+VAAYLL VLGGNT+ S+++   I+GS+ +EVEDERIELLLSQ
Sbjct: 1  MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQ 45

[Close]

BLAST of CcUC09G166650 vs. ExPASy TrEMBL
Match: A0A7J8U3S5 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_013073 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-07
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MKVVAAYLL VLGGN  HS D+ KVI+GS+ VE +D+RIELLLS+
Sbjct: 1  MKVVAAYLLAVLGGNASHSADDLKVILGSVGVEADDDRIELLLSE 45

[Close]

BLAST of CcUC09G166650 vs. ExPASy TrEMBL
Match: A0A6J1CQB9 (60S acidic ribosomal protein P2A-like OS=Momordica charantia OX=3673 GN=LOC111013606 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.7e-07
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MK+VAAYLL VLGGN   S+D  K I+GS+ VEVED+RIELLLSQ
Sbjct: 1  MKIVAAYLLAVLGGNNSPSVDHIKAILGSVGVEVEDDRIELLLSQ 45

[Close]

BLAST of CcUC09G166650 vs. ExPASy TrEMBL
Match: A0A6J1IM66 (60S acidic ribosomal protein P2-like OS=Cucurbita maxima OX=3661 GN=LOC111477740 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MK+VAAYLL  LGGNT+ S+++   I+GS+ +EVEDERIELLLSQ
Sbjct: 1  MKIVAAYLLADLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQ 45

[Close]

BLAST of CcUC09G166650 vs. ExPASy TrEMBL
Match: A0A0A0KKF6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G451490 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MK+VAAYLL +LGGNT+ SI + K I+ S+ VE EDERIELLLSQ
Sbjct: 1  MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQ 45

[Close]

BLAST of CcUC09G166650 vs. TAIR 10
Match: AT3G44590.2 (60S acidic ribosomal protein family )

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-05
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MKV AA+LL VLGGN   S D  K I+G++  +V+ E IELLL +
Sbjct: 1  MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKE 45

[Close]

BLAST of CcUC09G166650 vs. TAIR 10
Match: AT3G44590.1 (60S acidic ribosomal protein family )

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-05
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MKV AA+LL VLGGN   S D  K I+G++  +V+ E IELLL +
Sbjct: 1  MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKE 45

[Close]

BLAST of CcUC09G166650 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 44.7 bits (104), Expect = 3.6e-05
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MKVVAAYLL VL G    +  + K I+GS+  E ED +IELLL +
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKE 45

[Close]

BLAST of CcUC09G166650 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 44.7 bits (104), Expect = 3.6e-05
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MKVVAAYLL VL G    +  + K I+GS+  E ED +IELLL +
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKE 45

[Close]

BLAST of CcUC09G166650 vs. TAIR 10
Match: AT2G27710.3 (60S acidic ribosomal protein family )

HSP 1 Score: 44.7 bits (104), Expect = 3.6e-05
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 5  MKVVAAYLLVVLGGNTYHSIDESKVIVGSLRVEVEDERIELLLSQ 50
          MKVVAAYLL VL G    +  + K I+GS+  E ED +IELLL +
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKE 45

The following BLAST results are available for this feature:

BLAST of CcUC09G166650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543240.1	6.2e-07	68.89	60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022925971.1	6.2e-07	68.89	60S acidic ribosomal protein P2-like [Cucurbita moschata] >XP_022925973.1 60S ac...	[more]
MBA0644904.1	8.1e-07	71.11	hypothetical protein [Gossypium klotzschianum]	[more]
KAG6604363.1	1.4e-06	66.67	hypothetical protein SDJN03_04972, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022143771.1	1.8e-06	71.11	60S acidic ribosomal protein P2A-like [Momordica charantia] >XP_022143773.1 60S ...	[more]

BLAST of CcUC09G166650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24415	4.6e-05	51.11	60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1	[more]
P41099	6.0e-05	51.11	60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1	[more]
Q9LXM8	1.8e-04	53.33	60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 ...	[more]
P46252	1.8e-04	55.56	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]
Q9SLF7	5.1e-04	53.33	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]

BLAST of CcUC09G166650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDL3	3.0e-07	68.89	60S acidic ribosomal protein P2-like OS=Cucurbita moschata OX=3662 GN=LOC1114332...	[more]
A0A7J8U3S5	3.9e-07	71.11	Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_013073 PE=3...	[more]
A0A6J1CQB9	8.7e-07	71.11	60S acidic ribosomal protein P2A-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1IM66	1.9e-06	66.67	60S acidic ribosomal protein P2-like OS=Cucurbita maxima OX=3661 GN=LOC111477740...	[more]
A0A0A0KKF6	1.9e-06	68.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G451490 PE=3 SV=1	[more]

BLAST of CcUC09G166650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44590.2	1.2e-05	53.33	60S acidic ribosomal protein family	[more]
AT3G44590.1	1.2e-05	53.33	60S acidic ribosomal protein family	[more]
AT2G27710.1	3.6e-05	53.33	60S acidic ribosomal protein family	[more]
AT2G27710.2	3.6e-05	53.33	60S acidic ribosomal protein family	[more]
AT2G27710.3	3.6e-05	53.33	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 4..61 e-value: 7.2E-12 score: 47.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G166650.1	CcUC09G166650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome