CcUC09G166340 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G166340
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr09: 3125297 .. 3125701 (+)
RNA-Seq ExpressionCcUC09G166340
SyntenyCcUC09G166340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGCATTTCTTCTCATCTTCGTCGCCAAAGCCATCAACGAGTTCGTTTGAAAAGGAAACGAATAGAAACAGCCAATAGAGCACCAAAATGAAATCTACAACAGTATTCTTCCAATTAAGGAGGTTGATGAAGACGATGAAATGATTCAATTGAATCCGGAAGCTCTGAGAACAGAGCCGGAGAAGGGCGACGGAAACCGACCTGGTGGACCGCTCATTCCTGTTCGATTCCTTCGGCCTTTCGGCGGAGTGAAGGGTCAGATAATTTTGCTTTTTGGTTTATCCGATTGGGAGAATGTGAAGTTCGATGGTTTTGACTTTACTACAAACTTTCCCGTCGTCTTCATACATACGTCAATTATCTCTCTTTTTACAATAGGCGGTGGAAAAATTCAACTATGA

mRNA sequence

ATGCATGCATTTCTTCTCATCTTCGTCGCCAAAGCCATCAACGATATTCTTCCAATTAAGGAGGTTGATGAAGACGATGAAATGATTCAATTGAATCCGGAAGCTCTGAGAACAGAGCCGGAGAAGGGCGACGGAAACCGACCTGGTGGACCGCTCATTCCTGTTCGATTCCTTCGGCCTTTCGGCGGAGTGAAGGGTCAGATAATTTTGCTTTTTGGTTTATCCGATTGGGAGAATGTGAAGTTCGATGGTTTTGACTTTACTACAAACTTTCCCGTCGTCTTCATACATACGTCAATTATCTCTCTTTTTACAATAGGCGGTGGAAAAATTCAACTATGA

Coding sequence (CDS)

ATGCATGCATTTCTTCTCATCTTCGTCGCCAAAGCCATCAACGATATTCTTCCAATTAAGGAGGTTGATGAAGACGATGAAATGATTCAATTGAATCCGGAAGCTCTGAGAACAGAGCCGGAGAAGGGCGACGGAAACCGACCTGGTGGACCGCTCATTCCTGTTCGATTCCTTCGGCCTTTCGGCGGAGTGAAGGGTCAGATAATTTTGCTTTTTGGTTTATCCGATTGGGAGAATGTGAAGTTCGATGGTTTTGACTTTACTACAAACTTTCCCGTCGTCTTCATACATACGTCAATTATCTCTCTTTTTACAATAGGCGGTGGAAAAATTCAACTATGA

Protein sequence

MHAFLLIFVAKAINDILPIKEVDEDDEMIQLNPEALRTEPEKGDGNRPGGPLIPVRFLRPFGGVKGQIILLFGLSDWENVKFDGFDFTTNFPVVFIHTSIISLFTIGGGKIQL
Homology
[Close]
BLAST of CcUC09G166340 vs. NCBI nr
Match: KGN45174.1 (hypothetical protein Csa_016039 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 5.0e-14
Identity = 48/71 (67.61%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 28 MIQLNPEALRTEPEKGDGNRPGGPLIPVRFLRPFGGVKGQIILLFGLSDWENVKFDGFDF 87
          +IQLNPEA   EPEK DGNR   PLIPVRFLR FGGVKGQ  + FGLSD E+VKFD FD 
Sbjct: 18 VIQLNPEA---EPEKNDGNRRDRPLIPVRFLRLFGGVKGQKFMAFGLSDSESVKFDYFDL 77

Query: 88 TTN-FPVVFIH 98
              FPV F+H
Sbjct: 78 CCKFFPVGFVH 85

[Close]
BLAST of CcUC09G166340 vs. NCBI nr
Match: KAG6575658.1 (hypothetical protein SDJN03_26297, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-04
Identity = 28/38 (73.68%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 28 MIQLNPEALRTEPEKGDGNRPGGPLIPVRFLRPFGGVK 66
          MIQLNPEA +TEPEK DG RP  PLIP RF R FG VK
Sbjct: 18 MIQLNPEAPQTEPEKEDGIRPDQPLIPARFFRLFGEVK 55

[Close]
BLAST of CcUC09G166340 vs. ExPASy TrEMBL
Match: A0A0A0K8G2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429600 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 48/71 (67.61%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 28 MIQLNPEALRTEPEKGDGNRPGGPLIPVRFLRPFGGVKGQIILLFGLSDWENVKFDGFDF 87
          +IQLNPEA   EPEK DGNR   PLIPVRFLR FGGVKGQ  + FGLSD E+VKFD FD 
Sbjct: 18 VIQLNPEA---EPEKNDGNRRDRPLIPVRFLRLFGGVKGQKFMAFGLSDSESVKFDYFDL 77

Query: 88 TTN-FPVVFIH 98
              FPV F+H
Sbjct: 78 CCKFFPVGFVH 85

The following BLAST results are available for this feature:
BLAST of CcUC09G166340 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45174.15.0e-1467.61hypothetical protein Csa_016039 [Cucumis sativus][more]
KAG6575658.11.6e-0473.68hypothetical protein SDJN03_26297, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CcUC09G166340 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC09G166340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8G22.4e-1467.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429600 PE=4 SV=1[more]
BLAST of CcUC09G166340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G166340.1CcUC09G166340.1mRNA