CcUC09G163880 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G163880
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLate embryogenesis abundant protein
LocationCicolChr09: 1202240 .. 1203503 (+)
RNA-Seq ExpressionCcUC09G163880
SyntenyCcUC09G163880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAAAATCAAACATAGAAAAGGAAAACTTCCTCTTTCCCTCCATATTCTTCTTCTTTAAGCATGGCTAAGGTTACTGGAAATGGTCTCTACTTTATAAGGTCTATTCTTCTCATGCTGGTTTTATATATTTCTCGTTTCCATTCTTCGTGCATGTTTCTTTCGTGTTCTTGTCTAATTTAGCAATGTAATAGCAGGCAACTGAGCTCTTCGGTGGCATCCGAGCAACTTAACACACAAACAACTGCGTCGATGGTGGTGAGGAAGGTGAAGGCAGCTGTGGAAACAAGTGGTTATGATAATGAGGCAGTTGAACAGAAGCAGACATTTTGGATGAAAGATCCCAAGAGTGGAAACTGGATTCCTGAGAGCCACTTTCAAGAGATTGATGTGGTTGAATTGAGGGAGAAACTGCTACCTAAACCTAAACCTAAACCTAAGAAGCTGCTCTAAAACAGCAAGTGAAGCTTCAGCAAGAACAAAATTTCCATCTTTATCCATGCTACACTAAATAACACCTACTGCAAAAACTATTCTGCACTACTTTTTCTCTTTTTCTCTTTTTCTCTCTCTCTCTAATCTGTCACTTCTATCAGTTTCAAGTCTCATATGAATCCTTTCAAGTTAAATGGTGATGATTTTGACGGATGCAAGAAGGGAATCCGAATCTCATCAAGTTTATCATGAAAGCAAATCGCCAGATCACAGGAGTTCCAACAAGTCAAGAATGATGAGTTGGACTATGCAAATTAGTAAATACGTACAATTATCAACTCTAATATGGACAAACATCTCAATTGATATTTATTCCTAAGGTTTATTTTATTTTATGTTGATTACTTTTCAGAATGGACCATTCCAATGACATCCTTATCACTCCATTTCCTTCTAATGACAAAGCGGGAAACAGATAGCATTCTCTTTTTCTGAGAAGGGACCATCCTACTTTACTAAAGAAAAAAATATGGGAGACCATCCTAGTGACAACATGGGTTGATGGATTCAAACTTGTGACTTCTTAGGTCAAACTTCAAAGATAAATTCCTAAACTAGTTGGGCTATGCTACACTTAACATATACATCATATATATACACACACATGCATAGATAGGGAATTCTTATAAACGGTTATTCAGAAGCTGGACAACTACGTTACAGCAGAACATAATTTGCACTGTTTTTCTTTTTATTTTAGAAAGCATGTATGTTCACTTCTCATGTATGAGCAGACGTGCATAAAATCCACATGCCAAATACTAGACTAC

mRNA sequence

TTCAAAATCAAACATAGAAAAGGAAAACTTCCTCTTTCCCTCCATATTCTTCTTCTTTAAGCATGGCTAAGGTTACTGGAAATGGTCTCTACTTTATAAGGCAACTGAGCTCTTCGGTGGCATCCGAGCAACTTAACACACAAACAACTGCGTCGATGGTGGTGAGGAAGGTGAAGGCAGCTGTGGAAACAAGTGGTTATGATAATGAGGCAGTTGAACAGAAGCAGACATTTTGGATGAAAGATCCCAAGAGTGGAAACTGGATTCCTGAGAGCCACTTTCAAGAGATTGATGTGGTTGAATTGAGGGAGAAACTGCTACCTAAACCTAAACCTAAACCTAAGAAGCTGCTCTAAAACAGCAAGTGAAGCTTCAGCAAGAACAAAATTTCCATCTTTATCCATGCTACACTAAATAACACCTACTGCAAAAACTATTCTGCACTACTTTTTCTCTTTTTCTCTTTTTCTCTCTCTCTCTAATCTGTCACTTCTATCAGTTTCAAGTCTCATATGAATCCTTTCAAGTTAAATGGTGATGATTTTGACGGATGCAAGAAGGGAATCCGAATCTCATCAAGTTTATCATGAAAGCAAATCGCCAGATCACAGGAGTTCCAACAAGTCAAGAATGATGAGTTGGACTATGCAAATTAGTAAATACGTACAATTATCAACTCTAATATGGACAAACATCTCAATTGATATTTATTCCTAAGGTTTATTTTATTTTATGTTGATTACTTTTCAGAATGGACCATTCCAATGACATCCTTATCACTCCATTTCCTTCTAATGACAAAGCGGGAAACAGATAGCATTCTCTTTTTCTGAGAAGGGACCATCCTACTTTACTAAAGAAAAAAATATGGGAGACCATCCTAGTGACAACATGGGTTGATGGATTCAAACTTGTGACTTCTTAGGTCAAACTTCAAAGATAAATTCCTAAACTAGTTGGGCTATGCTACACTTAACATATACATCATATATATACACACACATGCATAGATAGGGAATTCTTATAAACGGTTATTCAGAAGCTGGACAACTACGTTACAGCAGAACATAATTTGCACTGTTTTTCTTTTTATTTTAGAAAGCATGTATGTTCACTTCTCATGTATGAGCAGACGTGCATAAAATCCACATGCCAAATACTAGACTAC

Coding sequence (CDS)

ATGGCTAAGGTTACTGGAAATGGTCTCTACTTTATAAGGCAACTGAGCTCTTCGGTGGCATCCGAGCAACTTAACACACAAACAACTGCGTCGATGGTGGTGAGGAAGGTGAAGGCAGCTGTGGAAACAAGTGGTTATGATAATGAGGCAGTTGAACAGAAGCAGACATTTTGGATGAAAGATCCCAAGAGTGGAAACTGGATTCCTGAGAGCCACTTTCAAGAGATTGATGTGGTTGAATTGAGGGAGAAACTGCTACCTAAACCTAAACCTAAACCTAAGAAGCTGCTCTAA

Protein sequence

MAKVTGNGLYFIRQLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMKDPKSGNWIPESHFQEIDVVELREKLLPKPKPKPKKLL
Homology
BLAST of CcUC09G163880 vs. NCBI nr
Match: KAE8646489.1 (hypothetical protein Csa_015817 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 6.8e-28
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 0

Query: 15 LSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMKDPKSGNWIPESHFQ 74
          +SSSVASEQL  QTTASMVVRKVKAAVET GYDNE VEQK+TFWMKDPKSGNWIPE+HF+
Sbjct: 1  MSSSVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EIDVVELREKLLPKPK 91
          E+DVVELREKLL KPK
Sbjct: 61 EMDVVELREKLLAKPK 76

BLAST of CcUC09G163880 vs. NCBI nr
Match: KAA0059359.1 (putative Senescence-associated protein 21 [Cucumis melo var. makuwa] >TYK03967.1 putative Senescence-associated protein 21 [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 0

Query: 15 LSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMKDPKSGNWIPESHFQ 74
          +SSS+ASEQL  QTTASMVVRKVKAAVETS YDNE VEQK+TFWMKDPKSGNWIPE+HF+
Sbjct: 1  MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EIDVVELREKLLPKPK 91
          EIDVVELREKLL KPK
Sbjct: 61 EIDVVELREKLLAKPK 76

BLAST of CcUC09G163880 vs. NCBI nr
Match: KAG6575415.1 (hypothetical protein SDJN03_26054, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.1 bits (318), Expect = 8.3e-26
Identity = 67/91 (73.63%), Postives = 75/91 (82.42%), Query Frame = 0

Query: 1  MAKVTGNGLYFIRQLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDN-EAVEQKQTFWM 60
          MAK+TGNG+YFIR+LSS VASEQL  + TA M V+ V A VETSG D+ +AVEQK  FWM
Sbjct: 1  MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWM 60

Query: 61 KDPKSGNWIPESHFQEIDVVELREKLLPKPK 91
          KDPKSGNWIPE+HF EIDVVELREKLL K K
Sbjct: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTK 91

BLAST of CcUC09G163880 vs. NCBI nr
Match: XP_022843012.1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea var. sylvestris] >CAA3012453.1 SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea])

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-12
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 0

Query: 1  MAKVTGNGLYFIRQLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMK 60
          MAK + N L  + +  S+VA+E   TQTT S V+++V  +V           +K  FWMK
Sbjct: 1  MAKFSLNSLLLLSRRESTVAAEITKTQTTTSSVIKEVADSV-----------RKDVFWMK 60

Query: 61 DPKSGNWIPESHFQEIDVVELREKLLPK 89
          DPK+GNWIPE+HF++IDV ELREKLL K
Sbjct: 61 DPKTGNWIPETHFEQIDVAELREKLLSK 77

BLAST of CcUC09G163880 vs. NCBI nr
Match: CAA3012452.1 (SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea])

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-12
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 1  MAKVTGNGLYFIRQLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMK 60
          MAK + N L  +R+  S+VA+E   TQTT S V+++V  +V           +K  FWMK
Sbjct: 1  MAKFSLNSLLLLRR-ESTVAAEITKTQTTTSSVIKEVADSV-----------RKDVFWMK 60

Query: 61 DPKSGNWIPESHFQEIDVVELREKLLPK 89
          DPK+GNWIPE+HF++IDV ELREKLL K
Sbjct: 61 DPKTGNWIPETHFEQIDVAELREKLLSK 76

BLAST of CcUC09G163880 vs. ExPASy TrEMBL
Match: A0A0A0K7L4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448050 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 0

Query: 1  MAKVTGNGLYFIRQLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMK 60
          MAKVTGN LYFIR++SSSVASEQL  QTTASMVVRKVKAAVET GYDNE VEQK+TFWMK
Sbjct: 1  MAKVTGNSLYFIRRMSSSVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60

Query: 61 DPKSGNWIPESHFQEIDVVELREKLLPKPK 91
          DPKSGNWIPE+HF+E+DVVELREKLL KPK
Sbjct: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPK 90

BLAST of CcUC09G163880 vs. ExPASy TrEMBL
Match: A0A5D3BWU2 (Putative Senescence-associated protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001640 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.3e-28
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 0

Query: 15 LSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMKDPKSGNWIPESHFQ 74
          +SSS+ASEQL  QTTASMVVRKVKAAVETS YDNE VEQK+TFWMKDPKSGNWIPE+HF+
Sbjct: 1  MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDNEVVEQKKTFWMKDPKSGNWIPENHFE 60

Query: 75 EIDVVELREKLLPKPK 91
          EIDVVELREKLL KPK
Sbjct: 61 EIDVVELREKLLAKPK 76

BLAST of CcUC09G163880 vs. ExPASy TrEMBL
Match: A0A6A1VZA4 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G026162 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 50/90 (55.56%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 1  MAKVTGNGLYFIRQLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMK 60
          MAKV  N L  + + S SVA   L        V    + A E+SG   EA EQK+ FWMK
Sbjct: 1  MAKVFINTLLHLSRRSFSVA--VLENIRRVQPVTTATRKAAESSG--AEATEQKENFWMK 60

Query: 61 DPKSGNWIPESHFQEIDVVELREKLLPKPK 91
          D KSGNWIPESHF EIDVV+LREKLLP+ K
Sbjct: 61 DLKSGNWIPESHFGEIDVVDLREKLLPRQK 86

BLAST of CcUC09G163880 vs. ExPASy TrEMBL
Match: A0A7N2LLH6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.6e-12
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 1  MAKVTGNGLYFIRQLSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWMK 60
          MA+V  + L  +R+ + SVA E    Q     V+  VK A E+ G    A EQK+ FWM+
Sbjct: 1  MARVPIDNLLLLRR-AYSVAVENARVQP----VMTVVKKAAESGG--TVAEEQKEIFWMR 60

Query: 61 DPKSGNWIPESHFQEIDVVELREKLLPKPK 91
          DPKSGNWIPESHF EI+V ELREKLLPK K
Sbjct: 61 DPKSGNWIPESHFGEINVAELREKLLPKKK 83

BLAST of CcUC09G163880 vs. ExPASy TrEMBL
Match: A0A2N9EY27 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7635 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.3e-12
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 0

Query: 1  MAKVTGNGLYFIRQ-LSSSVASEQLNTQTTASMVVRKVKAAVETSGYDNEAVEQKQTFWM 60
          MAKV  N L  +R+  S+SV + ++        VV  ++   E+SG    A EQK+TFWM
Sbjct: 1  MAKVPNNTLLLLRRSYSASVENARVKP------VVTVMRKGAESSG--TVAAEQKETFWM 60

Query: 61 KDPKSGNWIPESHFQEIDVVELREKLLPK 89
          +DPKSGNWIPESHF EIDV ELREK L K
Sbjct: 61 RDPKSGNWIPESHFGEIDVAELREKFLSK 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646489.16.8e-2886.84hypothetical protein Csa_015817 [Cucumis sativus][more]
KAA0059359.11.5e-2786.84putative Senescence-associated protein 21 [Cucumis melo var. makuwa] >TYK03967.1... [more]
KAG6575415.18.3e-2673.63hypothetical protein SDJN03_26054, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022843012.11.0e-1250.00protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea var. sy... [more]
CAA3012452.13.0e-1251.14SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Olea europaea subsp. europaea... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7L42.1e-3586.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448050 PE=4 SV=1[more]
A0A5D3BWU27.3e-2886.84Putative Senescence-associated protein 21 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A6A1VZA43.3e-1255.56Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G026162 PE=4 SV=1[more]
A0A7N2LLH65.6e-1254.44Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A2N9EY277.3e-1252.81Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7635 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPFAMPF03242LEA_3coord: 29..86
e-value: 4.6E-13
score: 49.7
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPANTHERPTHR33509LATE EMBRYOGENIS ABUNDANT PROTEIN 2-RELATEDcoord: 9..89
NoneNo IPR availablePANTHERPTHR33509:SF21OS02G0564600 PROTEINcoord: 9..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G163880.1CcUC09G163880.1mRNA