CcUC08G162280 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G162280
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC5
Location	CicolChr08: 29632589 .. 29633308 (-)
RNA-Seq Expression	CcUC08G162280
Synteny	CcUC08G162280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCTTGAAGGTCAAGTTGAAATTGCGTGGGTTGTTCATAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGAAAGGTAAGCAATGGAGAACCATATTCAATCTTGAGTTTCAGCCTCTTCTGAGAATTGCATTTTCCTGTTTTCTCCAATTAGGTTTATATTTTTTTCAGGTGATTGGAAACAAGTGGGATCATTACCTTGATCTTCTACAGGCAGACTATTCAGAAGGGTTCTGCATTTACCTCTTGAAATTCCGTCTTGATTTTTTGAAGATTTTTAGTTAGTAGACTTTTACCTTGCTATGGAGATGCGAATGCTTTTATTGTTATTATTATTGTTATTATTTTCTGTATTAGGGATGCACTTGATGCGCTGGGCTTGGTTCGCTACTGCTCTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGTAATCCCTCTCTCCCTCCTTTTTTACATTCATGAACGAGTTGTTTGATTTTTGATGTACAATTTTGCCTAATCGCTTCCTGTTTCATCTCTGGATAAGTCTGATACCAGTTAGTTAGGCGGGGGACAAGTTTTCTGCTTGTTCATTGTGTGCAGGAGTCAGCATTGGCGTTTACTTAAGAGAAAACAAAAACTATGGAAATACTCGAGCTATGTGTTGGTGTCCCGGTTTGTTTATTTGTTGTTTTATACGAACCTAA

mRNA sequence

AAACCTTGAAGGTCAAGTTGAAATTGCGTGGGTTGTTCATAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAGTGGGATCATTACCTTGATCTTCTACAGGCAGACTATTCAGAAGGACTTTTACCTTGCTATGGAGATGCGAATGCTTTTATTGTTATTATTATTGTTATTATTTTCTGTATTAGGGATGCACTTGATGCGCTGGGCTTGGTTCGCTACTGCTCTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGAGTCAGCATTGGCGTTTACTTAAGAGAAAACAAAAACTATGGAAATACTCGAGCTATGTGTTGGTGTCCCGGTTTGTTTATTTGTTGTTTTATACGAACCTAA

Coding sequence (CDS)

ATGATCATCCCAGTGCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAGTGGGATCATTACCTTGATCTTCTACAGGCAGACTATTCAGAAGGACTTTTACCTTGCTATGGAGATGCGAATGCTTTTATTGTTATTATTATTGTTATTATTTTCTGTATTAGGGATGCACTTGATGCGCTGGGCTTGGTTCGCTACTGCTCTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGAGTCAGCATTGGCGTTTACTTAAGAGAAAACAAAAACTATGGAAATACTCGAGCTATGTGTTGGTGTCCCGGTTTGTTTATTTGTTGTTTTATACGAACCTAA

Protein sequence

MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGLLPCYGDANAFIVIIIVIIFCIRDALDALGLVRYCSRRMLMTHVDLIEKLLNYNRVSIGVYLRENKNYGNTRAMCWCPGLFICCFIRT

Homology

[Close]

BLAST of CcUC08G162280 vs. NCBI nr
Match: RYR68509.1 (hypothetical protein Ahy_A03g015014 isoform A [Arachis hypogaea])

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-25
Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEG-LLPCYGDANAFIVIIIVIIFCIRDALD 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ+DYSEG +LP +         I+ I   +RDALD
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLDLLQSDYSEGSVLPSF--------FILSIPSFLRDALD 60

Query: 61 ALGLVRYCSRRMLMTHVDLIEKLLNYN 87
          ALGLVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 ALGLVRYCCRRMLMTHVDLIEKLLNYN 79

[Close]

BLAST of CcUC08G162280 vs. NCBI nr
Match: CDY25312.1 (BnaC01g29810D [Brassica napus] >VDD51457.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 124.0 bits (310), Expect = 8.7e-25
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSE------GLLPCYG--DANAFIVIIIVIIF 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADY+E      G   CY   D+   I  +I I  
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGESLYDGFSGCYWCFDSVVCISSLIFIPL 60

Query: 61 CIR-DALDALGLVRYCSRRMLMTHVDLIEKLLNYN 87
          C++ DALDA+GLVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 CVKLDALDAIGLVRYCCRRMLMTHVDLIEKLLNYN 95

[Close]

BLAST of CcUC08G162280 vs. NCBI nr
Match: XP_004138685.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus] >XP_008456558.1 PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo] >XP_022132211.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Momordica charantia] >XP_022951011.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita moschata] >XP_023002779.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita maxima] >XP_038884312.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Benincasa hispida] >XP_038885728.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Benincasa hispida] >KAG6585165.1 DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020085.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita argyrosperma subsp. argyrosperma] >KGN63029.1 hypothetical protein Csa_022113 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-24
Identity = 62/86 (72.09%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGLLPCYGDANAFIVIIIVIIFCIRDALDA 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEG                       DALDA
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEG-----------------------DALDA 60

Query: 61 LGLVRYCSRRMLMTHVDLIEKLLNYN 87
          LGLVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 LGLVRYCCRRMLMTHVDLIEKLLNYN 63

[Close]

BLAST of CcUC08G162280 vs. NCBI nr
Match: KAA0057130.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. makuwa] >TYJ97111.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-24
Identity = 62/86 (72.09%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGLLPCYGDANAFIVIIIVIIFCIRDALDA 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEG                       DALDA
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEG-----------------------DALDA 60

Query: 61 LGLVRYCSRRMLMTHVDLIEKLLNYN 87
          LGLVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 LGLVRYCCRRMLMTHVDLIEKLLNYN 63

[Close]

BLAST of CcUC08G162280 vs. NCBI nr
Match: KAG6598222.1 (DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-24
Identity = 62/86 (72.09%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGLLPCYGDANAFIVIIIVIIFCIRDALDA 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEG                       DALDA
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEG-----------------------DALDA 60

Query: 61 LGLVRYCSRRMLMTHVDLIEKLLNYN 87
          LGLVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 LGLVRYCCRRMLMTHVDLIEKLLNYN 63

[Close]

BLAST of CcUC08G162280 vs. ExPASy Swiss-Prot
Match: Q9SYA6 (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB10L PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-25
Identity = 58/86 (67.44%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGLLPCYGDANAFIVIIIVIIFCIRDALDA 60
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EG                       DALDA
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEG-----------------------DALDA 60

Query: 61 LGLVRYCSRRMLMTHVDLIEKLLNYN 87
          LGLVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 LGLVRYCCRRMLMTHVDLIEKLLNYN 63

[Close]

BLAST of CcUC08G162280 vs. ExPASy Swiss-Prot
Match: Q8LFJ6 (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=3702 GN=NRPB10 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-24
Identity = 58/86 (67.44%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGLLPCYGDANAFIVIIIVIIFCIRDALDA 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EG                       DALDA
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEG-----------------------DALDA 60

Query: 61 LGLVRYCSRRMLMTHVDLIEKLLNYN 87
          L LVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 LQLVRYCCRRMLMTHVDLIEKLLNYN 63

[Close]

BLAST of CcUC08G162280 vs. ExPASy Swiss-Prot
Match: Q39290 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-24
Identity = 58/86 (67.44%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGLLPCYGDANAFIVIIIVIIFCIRDALDA 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EG                       DALDA
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEG-----------------------DALDA 60

Query: 61 LGLVRYCSRRMLMTHVDLIEKLLNYN 87
          L LVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 LNLVRYCCRRMLMTHVDLIEKLLNYN 63

[Close]

BLAST of CcUC08G162280 vs. ExPASy Swiss-Prot
Match: Q55AB6 (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum OX=44689 GN=polr2l PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.3e-22
Identity = 54/85 (63.53%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGLLPCYGDANAFIVIIIVIIFCIRDALDA 60
          MIIPVRCFTCGKVIGNKWD YL LLQ DY+EG                       DALDA
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEG-----------------------DALDA 60

Query: 61 LGLVRYCSRRMLMTHVDLIEKLLNY 86
          L L RYC RRML+THVDLIEKLLNY
Sbjct: 61 LCLKRYCCRRMLLTHVDLIEKLLNY 62

[Close]

BLAST of CcUC08G162280 vs. ExPASy Swiss-Prot
Match: Q32P78 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913 GN=POLR2L PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-21
Identity = 51/85 (60.00%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGLLPCYGDANAFIVIIIVIIFCIRDALDA 60
          MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EG                       DALDA
Sbjct: 1  MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEG-----------------------DALDA 60

Query: 61 LGLVRYCSRRMLMTHVDLIEKLLNY 86
          LGL RYC RRML+ HVDLIEKLLNY
Sbjct: 61 LGLKRYCCRRMLLAHVDLIEKLLNY 62

[Close]

BLAST of CcUC08G162280 vs. ExPASy TrEMBL
Match: A0A445DZF4 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g015014 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.9e-25
Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEG-LLPCYGDANAFIVIIIVIIFCIRDALD 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ+DYSEG +LP +         I+ I   +RDALD
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLDLLQSDYSEGSVLPSF--------FILSIPSFLRDALD 60

Query: 61 ALGLVRYCSRRMLMTHVDLIEKLLNYN 87
          ALGLVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 ALGLVRYCCRRMLMTHVDLIEKLLNYN 79

[Close]

BLAST of CcUC08G162280 vs. ExPASy TrEMBL
Match: A0A3P6F1V8 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC1T03846H PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.2e-25
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSE------GLLPCYG--DANAFIVIIIVIIF 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADY+E      G   CY   D+   I  +I I  
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGESLYDGFSGCYWCFDSVVCISSLIFIPL 60

Query: 61 CIR-DALDALGLVRYCSRRMLMTHVDLIEKLLNYN 87
          C++ DALDA+GLVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 CVKLDALDAIGLVRYCCRRMLMTHVDLIEKLLNYN 95

[Close]

BLAST of CcUC08G162280 vs. ExPASy TrEMBL
Match: A0A078GJE9 (BnaC01g29810D protein OS=Brassica napus OX=3708 GN=BnaC01g29810D PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.2e-25
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSE------GLLPCYG--DANAFIVIIIVIIF 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADY+E      G   CY   D+   I  +I I  
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGESLYDGFSGCYWCFDSVVCISSLIFIPL 60

Query: 61 CIR-DALDALGLVRYCSRRMLMTHVDLIEKLLNYN 87
          C++ DALDA+GLVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 CVKLDALDAIGLVRYCCRRMLMTHVDLIEKLLNYN 95

[Close]

BLAST of CcUC08G162280 vs. ExPASy TrEMBL
Match: A0A5A7UPU3 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold371G00170 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 9.3e-25
Identity = 62/86 (72.09%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGLLPCYGDANAFIVIIIVIIFCIRDALDA 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEG                       DALDA
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEG-----------------------DALDA 60

Query: 61 LGLVRYCSRRMLMTHVDLIEKLLNYN 87
          LGLVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 LGLVRYCCRRMLMTHVDLIEKLLNYN 63

[Close]

BLAST of CcUC08G162280 vs. ExPASy TrEMBL
Match: A0A6J1KEH3 (DNA-directed RNA polymerase subunit 10-like protein OS=Cucurbita maxima OX=3661 GN=LOC111492503 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 9.3e-25
Identity = 62/86 (72.09%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGLLPCYGDANAFIVIIIVIIFCIRDALDA 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEG                       DALDA
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEG-----------------------DALDA 60

Query: 61 LGLVRYCSRRMLMTHVDLIEKLLNYN 87
          LGLVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 LGLVRYCCRRMLMTHVDLIEKLLNYN 63

[Close]

BLAST of CcUC08G162280 vs. TAIR 10
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-26
Identity = 58/86 (67.44%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGLLPCYGDANAFIVIIIVIIFCIRDALDA 60
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EG                       DALDA
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEG-----------------------DALDA 60

Query: 61 LGLVRYCSRRMLMTHVDLIEKLLNYN 87
          LGLVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 LGLVRYCCRRMLMTHVDLIEKLLNYN 63

[Close]

BLAST of CcUC08G162280 vs. TAIR 10
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-25
Identity = 58/86 (67.44%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGLLPCYGDANAFIVIIIVIIFCIRDALDA 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EG                       DALDA
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEG-----------------------DALDA 60

Query: 61 LGLVRYCSRRMLMTHVDLIEKLLNYN 87
          L LVRYC RRMLMTHVDLIEKLLNYN
Sbjct: 61 LQLVRYCCRRMLMTHVDLIEKLLNYN 63

The following BLAST results are available for this feature:

BLAST of CcUC08G162280 vs. NCBI nr


Match Name	E-value	Identity	Description
RYR68509.1	3.9e-25	74.71	hypothetical protein Ahy_A03g015014 isoform A [Arachis hypogaea]	[more]
CDY25312.1	8.7e-25	69.47	BnaC01g29810D [Brassica napus] >VDD51457.1 unnamed protein product [Brassica ole...	[more]
XP_004138685.1	1.9e-24	72.09	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus] >XP...	[more]
KAA0057130.1	1.9e-24	72.09	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. ma...	[more]
KAG6598222.1	1.9e-24	72.09	DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosp...	[more]

BLAST of CcUC08G162280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYA6	3.1e-25	67.44	DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3...	[more]
Q8LFJ6	1.5e-24	67.44	DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=...	[more]
Q39290	1.5e-24	67.44	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=...	[more]
Q55AB6	9.3e-22	63.53	DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium disc...	[more]
Q32P78	1.6e-21	60.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913...	[more]

BLAST of CcUC08G162280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445DZF4	1.9e-25	74.71	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g015014 PE=3 SV=1	[more]
A0A3P6F1V8	4.2e-25	69.47	Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC1T03846H PE=3 SV=1	[more]
A0A078GJE9	4.2e-25	69.47	BnaC01g29810D protein OS=Brassica napus OX=3708 GN=BnaC01g29810D PE=3 SV=1	[more]
A0A5A7UPU3	9.3e-25	72.09	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucumis melo var. ...	[more]
A0A6J1KEH3	9.3e-25	72.09	DNA-directed RNA polymerase subunit 10-like protein OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of CcUC08G162280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61700.1	2.2e-26	67.44	RNA polymerases N / 8 kDa subunit	[more]
AT1G11475.1	1.1e-25	67.44	RNA polymerases N / 8 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PFAM	PF01194	RNA_pol_N	coord: 1..82 e-value: 4.7E-26 score: 90.9
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PANTHER	PTHR23431	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER	coord: 55..88
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PANTHER	PTHR23431	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER	coord: 1..32
None	No IPR available	GENE3D	1.10.10.60		coord: 1..89 e-value: 1.1E-34 score: 120.3
None	No IPR available	PANTHER	PTHR23431:SF6	SUBFAMILY NOT NAMED	coord: 1..32
None	No IPR available	PANTHER	PTHR23431:SF6	SUBFAMILY NOT NAMED	coord: 55..88
IPR020789	RNA polymerases, subunit N, zinc binding site	PROSITE	PS01112	RNA_POL_N_8KD	coord: 2..11
IPR023580	RNA polymerase subunit RPB10	SUPERFAMILY	46924	RNA polymerase subunit RPB10	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G162280.1	CcUC08G162280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0042797	tRNA transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0016020	membrane
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding