CcUC08G160950 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G160950
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Glutamic acid-rich protein
Location	CicolChr08: 28573039 .. 28573455 (+)
RNA-Seq Expression	CcUC08G160950
Synteny	CcUC08G160950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGTGGGGACAGATTCCATCTCAGCCCTCCAACTATGTCAGTATTCTTCATCTTCGAGAACGGTGGCTCAAAGAAAATGAGCGAAACCAGAAACTTGACCAACAAGAACAGCAACAGAACGTTCTGCAGACGGAACCTGAGGAGAAGGATGATCAGAAGCCGGTGGTTCAAAAGCCTCGAATCAATGCTTCTTCTTGGAGCAGAAATGGGAGTAGAAATGAGAGTGGGAAGTTCCATAGGCATTATCGAGCTGTACCGGCGATTAAACCGCGCAATGTGAACGAGCCGTGCAAGAAGACTGAAGATGAAGGCGAGCCTCAGCTGGCTGTTTCTCAAATCGAGCGAGATGAGAAGAAGGGAAAGAAGTCTAAAAGGGTCGCAAGAAGAACCCTAGACTACAGAAGGAAGTGA

mRNA sequence

ATGGAAGGGTGGGGACAGATTCCATCTCAGCCCTCCAACTATGTCAGTATTCTTCATCTTCGAGAACGGTGGCTCAAAGAAAATGAGCGAAACCAGAAACTTGACCAACAAGAACAGCAACAGAACGTTCTGCAGACGGAACCTGAGGAGAAGGATGATCAGAAGCCGGTGGTTCAAAAGCCTCGAATCAATGCTTCTTCTTGGAGCAGAAATGGGAGTAGAAATGAGAGTGGGAAGTTCCATAGGCATTATCGAGCTGTACCGGCGATTAAACCGCGCAATGTGAACGAGCCGTGCAAGAAGACTGAAGATGAAGGCGAGCCTCAGCTGGCTGTTTCTCAAATCGAGCGAGATGAGAAGAAGGGAAAGAAGTCTAAAAGGGTCGCAAGAAGAACCCTAGACTACAGAAGGAAGTGA

Coding sequence (CDS)

ATGGAAGGGTGGGGACAGATTCCATCTCAGCCCTCCAACTATGTCAGTATTCTTCATCTTCGAGAACGGTGGCTCAAAGAAAATGAGCGAAACCAGAAACTTGACCAACAAGAACAGCAACAGAACGTTCTGCAGACGGAACCTGAGGAGAAGGATGATCAGAAGCCGGTGGTTCAAAAGCCTCGAATCAATGCTTCTTCTTGGAGCAGAAATGGGAGTAGAAATGAGAGTGGGAAGTTCCATAGGCATTATCGAGCTGTACCGGCGATTAAACCGCGCAATGTGAACGAGCCGTGCAAGAAGACTGAAGATGAAGGCGAGCCTCAGCTGGCTGTTTCTCAAATCGAGCGAGATGAGAAGAAGGGAAAGAAGTCTAAAAGGGTCGCAAGAAGAACCCTAGACTACAGAAGGAAGTGA

Protein sequence

MEGWGQIPSQPSNYVSILHLRERWLKENERNQKLDQQEQQQNVLQTEPEEKDDQKPVVQKPRINASSWSRNGSRNESGKFHRHYRAVPAIKPRNVNEPCKKTEDEGEPQLAVSQIERDEKKGKKSKRVARRTLDYRRK

Homology

[Close]

BLAST of CcUC08G160950 vs. NCBI nr
Match: XP_038884414.1 (gelsolin-related protein of 125 kDa-like [Benincasa hispida] >XP_038884415.1 gelsolin-related protein of 125 kDa-like [Benincasa hispida])

HSP 1 Score: 191.8 bits (486), Expect = 3.9e-45
Identity = 106/138 (76.81%), Postives = 113/138 (81.88%), Query Frame = 0


Query: 1   MEGWGQIPSQPSNYVSILHLRERWLKENERNQK-------LDQQEQQQNVLQTEPEEKDD 60
           ME WGQIPSQPSN+VSILHLRERWLKENERNQK       LDQQEQQQ V QTEPEEKDD
Sbjct: 1   MERWGQIPSQPSNFVSILHLRERWLKENERNQKEKEDLKQLDQQEQQQKVHQTEPEEKDD 60

Query: 61  QKPVVQKPRINASSWSRNGSRNESGKFHRHYRAVPAIKPRNVNEPCKKTEDEGEPQLAVS 120
           QKPVV+K RINASSWSRNGSR    KF R+YRAVP   PRNVNE CKKTEDEGEP+LAV 
Sbjct: 61  QKPVVRKTRINASSWSRNGSR----KFQRYYRAVPVSNPRNVNETCKKTEDEGEPELAVP 120

Query: 121 QIERDEKKGKKSKRVARR 132
           ++ERDEK  KKSKR  R+
Sbjct: 121 KVERDEKTEKKSKRKGRK 134

[Close]

BLAST of CcUC08G160950 vs. NCBI nr
Match: KAA0060961.1 (glutamic acid-rich protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.9e-31
Identity = 86/140 (61.43%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 1   MEGWG--QIPSQPSNYVSILHLRERWLKENERNQK-------LDQQEQQQNVLQTEPEEK 60
           ME WG  +IPS+PSNYV+IL LRERWLKENER  K       L+ +E+QQ V +TEPE+K
Sbjct: 1   MEEWGRTRIPSRPSNYVTILDLRERWLKENEREHKEKEDLKQLELEERQQKVPRTEPEKK 60

Query: 61  DDQKPVVQKPRINASSWSRNGSRNESGKFHRHYRAVPAIKPRNVNEPCKKTEDEGEPQLA 120
           DDQKPVV+KPR NASSWSRNG      K   +YRAVP   P+NVNE CKK EDE EP+L 
Sbjct: 61  DDQKPVVRKPRRNASSWSRNGRE----KVRMYYRAVPVSNPQNVNETCKKIEDEREPELP 120

Query: 121 VSQIERDEKKGKKSKRVARR 132
           V  IERD+KK KK ++  RR
Sbjct: 121 VPPIERDKKKEKKGRKKKRR 136

[Close]

BLAST of CcUC08G160950 vs. NCBI nr
Match: XP_008444535.1 (PREDICTED: glutamic acid-rich protein [Cucumis melo] >XP_008444536.1 PREDICTED: glutamic acid-rich protein [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 3.2e-31
Identity = 88/143 (61.54%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 1   MEGWG--QIPSQPSNYVSILHLRERWLKENERNQK-------LDQQEQQQNVLQTEPEEK 60
           ME WG  +IPS+PSNYV+IL LRERWLKENER  K       L+ +E+QQ V +TEPE+K
Sbjct: 1   MEEWGRTRIPSRPSNYVTILDLRERWLKENEREHKEKEDLKQLELEERQQKVPRTEPEKK 60

Query: 61  DDQKPVVQKPRINASSWSRNGSRNESGKFHRHYRAVPAIKPRNVNEPCKKTEDEGEPQLA 120
           DDQKPVV+KPR NASSWSRNG      K   +YRAVP   P+NVNE CKK EDE EP+L 
Sbjct: 61  DDQKPVVRKPRRNASSWSRNGRE----KVRMYYRAVPVSNPQNVNETCKKIEDEREPELP 120

Query: 121 VSQIERD---EKKGKKSKRVARR 132
           V  IERD   EKKG+K KR A++
Sbjct: 121 VPPIERDKKKEKKGRKKKRGAQK 139

[Close]

BLAST of CcUC08G160950 vs. NCBI nr
Match: XP_011649562.1 (uncharacterized protein DDB_G0286299 [Cucumis sativus] >XP_011649563.1 uncharacterized protein DDB_G0286299 [Cucumis sativus] >KGN62437.1 hypothetical protein Csa_018605 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-28
Identity = 84/140 (60.00%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 1   MEGWG--QIPSQPSNYVSILHLRERWLKENERNQK-------LDQQEQQQNVLQTEPEEK 60
           ME WG  QI SQPSNYV+IL LRERWLKENER  K       L+ +E++Q V +TEP++K
Sbjct: 1   MEEWGRSQISSQPSNYVTILDLRERWLKENERKHKEKEDLKQLELEEREQKVPRTEPDKK 60

Query: 61  DDQKPVVQKPRINASSWSRNGSRNESGKFHRHYRAVPAIKPRNVNEPCKKTEDEGEPQLA 120
           DDQKPVV+KPR NASSWSRNGS     K  R+YRA     PRNVN+ CKK  DE EP+LA
Sbjct: 61  DDQKPVVRKPRRNASSWSRNGSE----KVRRYYRA----NPRNVNKICKKILDESEPELA 120

Query: 121 VSQIERDEKKGKKSKRVARR 132
           + +IERD+KK KK ++  RR
Sbjct: 121 IPRIERDKKKEKKGRKKNRR 132

[Close]

BLAST of CcUC08G160950 vs. NCBI nr
Match: XP_022131328.1 (myb-like protein X [Momordica charantia])

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-21
Identity = 75/140 (53.57%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 1   MEGWGQIPSQPSNYVSILHLRERWLKENERNQKLDQQE--------QQQNVLQTEPEEK- 60
           ME  G IPS PSNYV+IL LRERWLKENERNQK  ++E        Q+Q V +++PEEK 
Sbjct: 1   MEEPGMIPSLPSNYVTILDLRERWLKENERNQKEKEEEEQSPPEQAQEQKVERSKPEEKH 60

Query: 61  ----DDQKPVVQKPRINASSWSRNGSRNESGKFHRHYRAVPAIKPRNVNEPCKKTEDEGE 120
               DD + V+QKPR+  +SW    S   SG+F   YR VPA  PRNVNE CKKTE EG 
Sbjct: 61  DRKLDDGEAVIQKPRLRTTSW----SNKRSGQFRMVYRVVPASNPRNVNERCKKTETEG- 120

Query: 121 PQLAVSQIERDEKKGKKSKR 128
             +   +I RDEK+ KK+KR
Sbjct: 121 --VTEPRIRRDEKE-KKAKR 132

[Close]

BLAST of CcUC08G160950 vs. ExPASy TrEMBL
Match: A0A5A7V598 (Glutamic acid-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00950 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 9.1e-32
Identity = 86/140 (61.43%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 1   MEGWG--QIPSQPSNYVSILHLRERWLKENERNQK-------LDQQEQQQNVLQTEPEEK 60
           ME WG  +IPS+PSNYV+IL LRERWLKENER  K       L+ +E+QQ V +TEPE+K
Sbjct: 1   MEEWGRTRIPSRPSNYVTILDLRERWLKENEREHKEKEDLKQLELEERQQKVPRTEPEKK 60

Query: 61  DDQKPVVQKPRINASSWSRNGSRNESGKFHRHYRAVPAIKPRNVNEPCKKTEDEGEPQLA 120
           DDQKPVV+KPR NASSWSRNG      K   +YRAVP   P+NVNE CKK EDE EP+L 
Sbjct: 61  DDQKPVVRKPRRNASSWSRNGRE----KVRMYYRAVPVSNPQNVNETCKKIEDEREPELP 120

Query: 121 VSQIERDEKKGKKSKRVARR 132
           V  IERD+KK KK ++  RR
Sbjct: 121 VPPIERDKKKEKKGRKKKRR 136

[Close]

BLAST of CcUC08G160950 vs. ExPASy TrEMBL
Match: A0A1S3BBD2 (glutamic acid-rich protein OS=Cucumis melo OX=3656 GN=LOC103487826 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.5e-31
Identity = 88/143 (61.54%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 1   MEGWG--QIPSQPSNYVSILHLRERWLKENERNQK-------LDQQEQQQNVLQTEPEEK 60
           ME WG  +IPS+PSNYV+IL LRERWLKENER  K       L+ +E+QQ V +TEPE+K
Sbjct: 1   MEEWGRTRIPSRPSNYVTILDLRERWLKENEREHKEKEDLKQLELEERQQKVPRTEPEKK 60

Query: 61  DDQKPVVQKPRINASSWSRNGSRNESGKFHRHYRAVPAIKPRNVNEPCKKTEDEGEPQLA 120
           DDQKPVV+KPR NASSWSRNG      K   +YRAVP   P+NVNE CKK EDE EP+L 
Sbjct: 61  DDQKPVVRKPRRNASSWSRNGRE----KVRMYYRAVPVSNPQNVNETCKKIEDEREPELP 120

Query: 121 VSQIERD---EKKGKKSKRVARR 132
           V  IERD   EKKG+K KR A++
Sbjct: 121 VPPIERDKKKEKKGRKKKRGAQK 139

[Close]

BLAST of CcUC08G160950 vs. ExPASy TrEMBL
Match: A0A0A0LNR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354630 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.5e-29
Identity = 84/140 (60.00%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 1   MEGWG--QIPSQPSNYVSILHLRERWLKENERNQK-------LDQQEQQQNVLQTEPEEK 60
           ME WG  QI SQPSNYV+IL LRERWLKENER  K       L+ +E++Q V +TEP++K
Sbjct: 1   MEEWGRSQISSQPSNYVTILDLRERWLKENERKHKEKEDLKQLELEEREQKVPRTEPDKK 60

Query: 61  DDQKPVVQKPRINASSWSRNGSRNESGKFHRHYRAVPAIKPRNVNEPCKKTEDEGEPQLA 120
           DDQKPVV+KPR NASSWSRNGS     K  R+YRA     PRNVN+ CKK  DE EP+LA
Sbjct: 61  DDQKPVVRKPRRNASSWSRNGSE----KVRRYYRA----NPRNVNKICKKILDESEPELA 120

Query: 121 VSQIERDEKKGKKSKRVARR 132
           + +IERD+KK KK ++  RR
Sbjct: 121 IPRIERDKKKEKKGRKKNRR 132

[Close]

BLAST of CcUC08G160950 vs. ExPASy TrEMBL
Match: A0A6J1BT17 (myb-like protein X OS=Momordica charantia OX=3673 GN=LOC111004586 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 75/140 (53.57%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 1   MEGWGQIPSQPSNYVSILHLRERWLKENERNQKLDQQE--------QQQNVLQTEPEEK- 60
           ME  G IPS PSNYV+IL LRERWLKENERNQK  ++E        Q+Q V +++PEEK 
Sbjct: 1   MEEPGMIPSLPSNYVTILDLRERWLKENERNQKEKEEEEQSPPEQAQEQKVERSKPEEKH 60

Query: 61  ----DDQKPVVQKPRINASSWSRNGSRNESGKFHRHYRAVPAIKPRNVNEPCKKTEDEGE 120
               DD + V+QKPR+  +SW    S   SG+F   YR VPA  PRNVNE CKKTE EG 
Sbjct: 61  DRKLDDGEAVIQKPRLRTTSW----SNKRSGQFRMVYRVVPASNPRNVNERCKKTETEG- 120

Query: 121 PQLAVSQIERDEKKGKKSKR 128
             +   +I RDEK+ KK+KR
Sbjct: 121 --VTEPRIRRDEKE-KKAKR 132

[Close]

BLAST of CcUC08G160950 vs. ExPASy TrEMBL
Match: A0A6J1HDF8 (uncharacterized protein LOC111462917 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462917 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.7e-18
Identity = 71/132 (53.79%), Postives = 84/132 (63.64%), Query Frame = 0


Query: 1   MEGWG-QIPSQPSNYVSILHLRERWLKENERNQKLDQQEQQQNVLQTEPEEKDDQKPVVQ 60
           MEGWG +I SQPSNY S                + +++EQQQ V +TEP EKDDQKP VQ
Sbjct: 25  MEGWGRRISSQPSNYFS-------------NPPQKEKEEQQQKVQRTEPAEKDDQKPAVQ 84

Query: 61  KPRINASSWSRNGSRNESGKFHRHYRAVPAIKPRNVNEPCKKTEDEGEPQLAVSQIERDE 120
           KPRI A+S SR+GSR    KF  +YRA PA  PRNV E  KKTED GEP L     E+DE
Sbjct: 85  KPRIKATSRSRSGSR----KFQTYYRAEPASNPRNVKETYKKTEDGGEPLL-----EKDE 133

Query: 121 KKGKKSKRVARR 132
           K+ KKS+R  R+
Sbjct: 145 KE-KKSRRKGRK 133

[Close]

BLAST of CcUC08G160950 vs. TAIR 10
Match: AT2G30960.1 (unknown protein; Has 4906 Blast hits to 2903 proteins in 334 species: Archae - 5; Bacteria - 381; Metazoa - 1639; Fungi - 509; Plants - 244; Viruses - 5; Other Eukaryotes - 2123 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.5e-05
Identity = 29/74 (39.19%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 7  IPSQPSNYVSILHLRERWLKENERNQKLDQQEQQQNVLQTEPE---EKDDQKPVVQKPRI 66
          +P  P+NY+SIL L+ERWL E E+ +K  ++E+++  LQ E E   E++D K   ++ R+
Sbjct: 16 VPLIPANYISILQLQERWLNEKEKKRK--EEEERRRKLQAEEEKKIEEEDLKKAEEEKRM 75

Query: 67 NASSWSRNGSRNES 78
          N S+    G + ES
Sbjct: 76 NRSNRKHFGRKKES 87

The following BLAST results are available for this feature:

BLAST of CcUC08G160950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884414.1	3.9e-45	76.81	gelsolin-related protein of 125 kDa-like [Benincasa hispida] >XP_038884415.1 gel...	[more]
KAA0060961.1	1.9e-31	61.43	glutamic acid-rich protein [Cucumis melo var. makuwa]	[more]
XP_008444535.1	3.2e-31	61.54	PREDICTED: glutamic acid-rich protein [Cucumis melo] >XP_008444536.1 PREDICTED: ...	[more]
XP_011649562.1	1.1e-28	60.00	uncharacterized protein DDB_G0286299 [Cucumis sativus] >XP_011649563.1 uncharact...	[more]
XP_022131328.1	3.0e-21	53.57	myb-like protein X [Momordica charantia]	[more]

BLAST of CcUC08G160950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC08G160950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V598	9.1e-32	61.43	Glutamic acid-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3BBD2	1.5e-31	61.54	glutamic acid-rich protein OS=Cucumis melo OX=3656 GN=LOC103487826 PE=4 SV=1	[more]
A0A0A0LNR9	5.5e-29	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354630 PE=4 SV=1	[more]
A0A6J1BT17	1.5e-21	53.57	myb-like protein X OS=Momordica charantia OX=3673 GN=LOC111004586 PE=4 SV=1	[more]
A0A6J1HDF8	9.7e-18	53.79	uncharacterized protein LOC111462917 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CcUC08G160950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30960.1	2.5e-05	39.19	unknown protein; Has 4906 Blast hits to 2903 proteins in 334 species: Archae - 5...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G160950.1	CcUC08G160950.1	mRNA