CcUC08G160870 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G160870
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr08: 28546753 .. 28547512 (-)
RNA-Seq Expression	CcUC08G160870
Synteny	CcUC08G160870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCACAGAATGATATCTATGAATGGTTCGAGTTCATTCATGAACGAACTCAAGCGATTCTGCAGAGTAATGGACTCAGAAATACAAATGTTGGGCAAAAAGGATACTGTAGTGTGGTATTTGAACTCTGGGATTCGATTTTCGAGTTAAGTAAGCTGAAAAAAGGACCTTCGTTATACTTTTACCGTATAGGGAACGGCGTGTATAAATTCTGCAATGAAATAGTGGGAAGAAGATGGAGGAATAGAAGCTCAGTAATAGAAAATTAGGGGCAAAAACTAATGTTTGATTAATGACAAAGAAGAACAAGACAATAAATGCAGGAACCAAGAAGATGAAATGGGCGACACGAGCAAGAAGACCAGTGCATATTTTTGGACTCTTCCTTCAAAAGAATACAAAAACTCAGGATCCAGACGTGATTTTGAAATTGAAAGCCACCAACGTGAAAACTCCCACTCTTTCCCCAGTCTATTTCTTTCGATTCTGAGCCTGAAGCAATTGATCCTTCTTCATTCAAGCACATCAAGTGCAAAGCATTTGAGATGGTTTTCGAGTTTGAGATCTGAATCATATGCTACCTTGACATGGGCTTTTCCTATTCTTTTCTCTTTTTTTGTGTATGACGACATTATTAGTGCAGAAAGGTCCCTTGTCTATGTTGGAATGGGCTTTGTACCTCTACCTGTAGGCGCAGAGTCGCAGATGCCTATGGATTCCCTCAGTTTACTCTCTCTCCATCCGTTTGAGGTTTGA

mRNA sequence

ATGAAGTCACAGAATGATATCTATGAATGGTTCGAGTTCATTCATGAACGAACTCAAGCGATTCTGCAGAGTAATGGACTCAGAAATACAAATGTTGGGCAAAAAGGATACTGTAGTGTGGTATTTGAACTCTGGGATTCGATTTTCGAGTTAAAAGAACAAGACAATAAATGCAGGAACCAAGAAGATGAAATGGGCGACACGAGCAAGAAGACCAGTGCATATTTTTGGACTCTTCCTTCAAAAGAATACAAAAACTCAGGATCCAGACGTGATTTTGAAATTGAAAGCCACCAACGTGAAAACTCCCACTCTTTCCCCAGTCTATTTCTTTCGATTCTGAGCCTGAAGCAATTGATCCTTCTTCATTCAAGCACATCAAGTGCAAAGCATTTGAGATGGTTTTCGAGTTTGAGATCTGAATCATATGCTACCTTGACATGGGCTTTTCCTATTCTTTTCTCTTTTTTTGTGTATGACGACATTATTAGTGCAGAAAGGTCCCTTGTCTATGTTGGAATGGGCTTTGTACCTCTACCTGTAGGCGCAGAGTCGCAGATGCCTATGGATTCCCTCAGTTTACTCTCTCTCCATCCGTTTGAGGTTTGA

Coding sequence (CDS)

ATGAAGTCACAGAATGATATCTATGAATGGTTCGAGTTCATTCATGAACGAACTCAAGCGATTCTGCAGAGTAATGGACTCAGAAATACAAATGTTGGGCAAAAAGGATACTGTAGTGTGGTATTTGAACTCTGGGATTCGATTTTCGAGTTAAAAGAACAAGACAATAAATGCAGGAACCAAGAAGATGAAATGGGCGACACGAGCAAGAAGACCAGTGCATATTTTTGGACTCTTCCTTCAAAAGAATACAAAAACTCAGGATCCAGACGTGATTTTGAAATTGAAAGCCACCAACGTGAAAACTCCCACTCTTTCCCCAGTCTATTTCTTTCGATTCTGAGCCTGAAGCAATTGATCCTTCTTCATTCAAGCACATCAAGTGCAAAGCATTTGAGATGGTTTTCGAGTTTGAGATCTGAATCATATGCTACCTTGACATGGGCTTTTCCTATTCTTTTCTCTTTTTTTGTGTATGACGACATTATTAGTGCAGAAAGGTCCCTTGTCTATGTTGGAATGGGCTTTGTACCTCTACCTGTAGGCGCAGAGTCGCAGATGCCTATGGATTCCCTCAGTTTACTCTCTCTCCATCCGTTTGAGGTTTGA

Protein sequence

MKSQNDIYEWFEFIHERTQAILQSNGLRNTNVGQKGYCSVVFELWDSIFELKEQDNKCRNQEDEMGDTSKKTSAYFWTLPSKEYKNSGSRRDFEIESHQRENSHSFPSLFLSILSLKQLILLHSSTSSAKHLRWFSSLRSESYATLTWAFPILFSFFVYDDIISAERSLVYVGMGFVPLPVGAESQMPMDSLSLLSLHPFEV

Homology

[Close]

BLAST of CcUC08G160870 vs. NCBI nr
Match: KGN62446.1 (hypothetical protein Csa_018581 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 5.1e-46
Identity = 100/120 (83.33%), Postives = 109/120 (90.83%), Query Frame = 0


Query: 65  MGDTSKKTSAYFWTLPSKEYKNSGSRRDFEIESHQRENSHSFPSLFLSILSLKQLILLHS 124
           MG+ +KKTSAYFWT PSKEYKNSGS+RDFE+++HQ ENSH +PSL LSI SLK+LILLHS
Sbjct: 1   MGNKNKKTSAYFWTFPSKEYKNSGSKRDFEMKTHQLENSHPYPSLLLSIWSLKKLILLHS 60

Query: 125 STSSAKHLRWFSSLRSESYATLTWAFPILFSFFVYDDIISAERSLVYVGMGFVPLPVGAE 184
           S SSAKHLR FSSLRSES ATLTWAFP+LFSFFVYDDIISAERS VYVGM FVPLPVGAE
Sbjct: 61  SISSAKHLRLFSSLRSESSATLTWAFPMLFSFFVYDDIISAERSFVYVGMDFVPLPVGAE 120

[Close]

BLAST of CcUC08G160870 vs. ExPASy TrEMBL
Match: A0A0A0LR42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354720 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.5e-46
Identity = 100/120 (83.33%), Postives = 109/120 (90.83%), Query Frame = 0


Query: 65  MGDTSKKTSAYFWTLPSKEYKNSGSRRDFEIESHQRENSHSFPSLFLSILSLKQLILLHS 124
           MG+ +KKTSAYFWT PSKEYKNSGS+RDFE+++HQ ENSH +PSL LSI SLK+LILLHS
Sbjct: 1   MGNKNKKTSAYFWTFPSKEYKNSGSKRDFEMKTHQLENSHPYPSLLLSIWSLKKLILLHS 60

Query: 125 STSSAKHLRWFSSLRSESYATLTWAFPILFSFFVYDDIISAERSLVYVGMGFVPLPVGAE 184
           S SSAKHLR FSSLRSES ATLTWAFP+LFSFFVYDDIISAERS VYVGM FVPLPVGAE
Sbjct: 61  SISSAKHLRLFSSLRSESSATLTWAFPMLFSFFVYDDIISAERSFVYVGMDFVPLPVGAE 120

The following BLAST results are available for this feature:

BLAST of CcUC08G160870 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62446.1	5.1e-46	83.33	hypothetical protein Csa_018581 [Cucumis sativus]	[more]

BLAST of CcUC08G160870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC08G160870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR42	2.5e-46	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354720 PE=4 SV=1	[more]

BLAST of CcUC08G160870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G160870.1	CcUC08G160870.1	mRNA