CcUC08G160280 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G160280
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Thioredoxin domain-containing protein
Location	CicolChr08: 28078058 .. 28080124 (+)
RNA-Seq Expression	CcUC08G160280
Synteny	CcUC08G160280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCACCCACGTGAAAGAAAATCAATGGCAAACGAAGGAAGAAGATAATGGTGGCGTCGTGTCATTTTCTCGTTTGCAGCTGCTCCTCTGCTCTTCTTCCCGCTCGGAGGTAACCCACTGGTCCTTCATTTGTTGCTTTCCCTAATAAATATTTACACTCTTCATTCTTTTAACAATTATTTTTCACCCTCTTTCTGAATCGATAATCGAAATAGTTCCTTCCTTTAACGTGATTAATGTTGAAAACGATTTATGGGTTTGAAATGCTGCAACGAATGCTACATCTGAATCTGATATATTGCTCAGTTTTATTAGCTTTCTGGTTGAAGTTCATTCACTAAAAAAGACCCAAATCGGAGTTTTGGGTATATATGCATATATATGTTGTAATGCAAAGGCAGAACCAGAATGTACTGCAATGTAAAGCTTTAATCAGTTTTGGATTAAACCCAAATGAAGAAGTGGAATCGAGATTCCCCATTTCAATTCCCTGCTGGTTGTCGTCGGAGAAAGGACAGGTTCGATTGTCGATTACAAGACCCGAAGTTCGGAGACACCAATTGTTGTTCAAGAGTAAAATCAGAGTTGGTGCTGGAAATCAGGAGGAGTTGTTTGACGAAGATGATGATCTTTGTCCTGTAGACTGTGTGAGGGAATTCAAGACGGACGAAGAGTTCCTTAAAATTCTAGACAGGGCGAAGGAAAACGGTGCTTTGGTGGTTGTGGACTTTTATCGAACATCTTGTGGGAGTTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGGTCTGGTGATCAAGAAGCACCGGTTATCTTCTTGAAGCATAATGTGAGTGTTTATATAAGCCAAGTTTTCTTGGGAAATGACTTCCATTCCACCACTGAATGATGATTATGATTTGAATGTGATTGTGGTTTCAGGTCATGGATGAATATGATGAGCAATCTGAGGTTGCTGAACGACTAAGGATCAGGGTAAGCTTCTTTTCTCTTCTTGATTGCCATTTTGGGTGGTGTTGAATTGAACTGAAGTTTTGATTTCTGAACTGGTTTTGGTCTCTTGAGGAACTTTTATTGGTTGCGAGAGATCACATCTTTTAGAATAATTTCATACTTGATTTCACATACATTACCTTTCCCCTCCATTTTCTTCTTCTTCTTCATCAAACCGCCTCCAATTCTGCATGCCGCTCCTCCTCCAAATGCCTGGAGGAATCTGAATGTCATCGTCATGGATCGGCCGGACTTGATCTAGCGATCGTAGATTAGAACAGAGTCAGCAATCATCGCGTCGCTTGGAGATCGCCAAATCTAGGCCTGCCGTCATTCGTGGGTTCCTCAGTACGGGCTGCGGAAAATGAAATATTTTCTAAACTTTTTAAAGATTCTCAGTTAACTTTTTTTCTTTTAGTAATAATAATATTATGATTATATTTTTGCTGCGTCAACAACACAAATAATATAAAATTAATATAGTTTTAAACATCACCATGCGAAGTATTTAGAAAAAACAATGGTCTAGCTAAGGTGAGTTTGGCTCAATAGTATTAGCATGCACTCTATTCTTATAAGTCAAAGGTTCAATCTCCCACTGTTGCAATTTGGTTTCAACTTTCATGAACCTATCAAACACAAACTTGAAATTTAAGAGACTAGCTAGACATTTTTCAAAGTTTAGTTTTGGGTCTAACATTTTAATAAATACTTAGTTTAATTTACTGGCCTTCTCAACACAAACATGACTAAACTTGTTTGACATTTTTTTTTTCCTTCAACAAAAAGATGTTGGCTAATACTTTACCCGTGTCCACAATTATTTGCATTGCATCTTCAATTATTAATGTTGTTTCACTTCAATTTTACAAATAGAATAAGTTTGGGTTTTGTTTTTGCATGTTTGTTCACTAATATTGGAAATTAATGATGCCATTGCAGACAGTACCACTGTTCCACTTCTATAAAGATGGGGTCTTATTAGAAGCCTTTCCCACCAGAGACAAAGGGAGGATTCTTACAGCCATAAGCAAATATTCATCTTCTGCACTTCAAATCTGA

mRNA sequence

ATGTCAACCACCCACGTGAAAGAAAATCAATGGCAAACGAAGGAAGAAGATAATGGTGGCGTCGTGTCATTTTCTCGTTTGCAGCTGCTCCTCTGCTCTTCTTCCCGCTCGGAGAACCAGAATGTACTGCAATGTAAAGCTTTAATCAGTTTTGGATTAAACCCAAATGAAGAAGTGGAATCGAGATTCCCCATTTCAATTCCCTGCTGGTTGTCGTCGGAGAAAGGACAGGTTCGATTGTCGATTACAAGACCCGAAGTTCGGAGACACCAATTGTTGTTCAAGAGTAAAATCAGAGTTGGTGCTGGAAATCAGGAGGAGTTGTTTGACGAAGATGATGATCTTTGTCCTGTAGACTGTGTGAGGGAATTCAAGACGGACGAAGAGTTCCTTAAAATTCTAGACAGGGCGAAGGAAAACGGTGCTTTGGTGGTTGTGGACTTTTATCGAACATCTTGTGGGAGTTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGGTCTGGTGATCAAGAAGCACCGGTTATCTTCTTGAAGCATAATGTCATGGATGAATATGATGAGCAATCTGAGGTTGCTGAACGACTAAGGATCAGGACAGTACCACTGTTCCACTTCTATAAAGATGGGGTCTTATTAGAAGCCTTTCCCACCAGAGACAAAGGGAGGATTCTTACAGCCATAAGCAAATATTCATCTTCTGCACTTCAAATCTGA

Coding sequence (CDS)

ATGTCAACCACCCACGTGAAAGAAAATCAATGGCAAACGAAGGAAGAAGATAATGGTGGCGTCGTGTCATTTTCTCGTTTGCAGCTGCTCCTCTGCTCTTCTTCCCGCTCGGAGAACCAGAATGTACTGCAATGTAAAGCTTTAATCAGTTTTGGATTAAACCCAAATGAAGAAGTGGAATCGAGATTCCCCATTTCAATTCCCTGCTGGTTGTCGTCGGAGAAAGGACAGGTTCGATTGTCGATTACAAGACCCGAAGTTCGGAGACACCAATTGTTGTTCAAGAGTAAAATCAGAGTTGGTGCTGGAAATCAGGAGGAGTTGTTTGACGAAGATGATGATCTTTGTCCTGTAGACTGTGTGAGGGAATTCAAGACGGACGAAGAGTTCCTTAAAATTCTAGACAGGGCGAAGGAAAACGGTGCTTTGGTGGTTGTGGACTTTTATCGAACATCTTGTGGGAGTTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGGTCTGGTGATCAAGAAGCACCGGTTATCTTCTTGAAGCATAATGTCATGGATGAATATGATGAGCAATCTGAGGTTGCTGAACGACTAAGGATCAGGACAGTACCACTGTTCCACTTCTATAAAGATGGGGTCTTATTAGAAGCCTTTCCCACCAGAGACAAAGGGAGGATTCTTACAGCCATAAGCAAATATTCATCTTCTGCACTTCAAATCTGA

Protein sequence

MSTTHVKENQWQTKEEDNGGVVSFSRLQLLLCSSSRSENQNVLQCKALISFGLNPNEEVESRFPISIPCWLSSEKGQVRLSITRPEVRRHQLLFKSKIRVGAGNQEELFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEAFPTRDKGRILTAISKYSSSALQI

Homology

[Close]

BLAST of CcUC08G160280 vs. NCBI nr
Match: XP_038886222.1 (thioredoxin-like 4, chloroplastic [Benincasa hispida] >XP_038886223.1 thioredoxin-like 4, chloroplastic [Benincasa hispida] >XP_038886224.1 thioredoxin-like 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 382.9 bits (982), Expect = 2.1e-102
Identity = 188/203 (92.61%), Postives = 194/203 (95.57%), Query Frame = 0


Query: 38  ENQNVLQCKALISFGLNPNEEVESRFPISIPCWLSSEKGQVRLSITRPEVRRHQLLFKSK 97
           +N+NVLQCKALISFGLNPNEE+ESR PISIP WLSSEKG VRLSITRPEV R QLLFKSK
Sbjct: 4   QNRNVLQCKALISFGLNPNEELESRIPISIPRWLSSEKGNVRLSITRPEVPRQQLLFKSK 63

Query: 98  IRVGAGNQEELFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCK 157
           IRV AGNQ ELFD+DD+LCPVDCVREFKTDEEFLKILDRAKENG LVVVDFYRTSCGSCK
Sbjct: 64  IRVTAGNQGELFDDDDELCPVDCVREFKTDEEFLKILDRAKENGTLVVVDFYRTSCGSCK 123

Query: 158 YIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEA 217
           YIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRI+TVPLFHFYKDGVLLEA
Sbjct: 124 YIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEA 183

Query: 218 FPTRDKGRILTAISKYSSSALQI 241
           FPTRDK RILTAISKYSSSALQI
Sbjct: 184 FPTRDKERILTAISKYSSSALQI 206

[Close]

BLAST of CcUC08G160280 vs. NCBI nr
Match: KAA0060902.1 (thioredoxin-like 4 [Cucumis melo var. makuwa])

HSP 1 Score: 367.1 bits (941), Expect = 1.2e-97
Identity = 177/203 (87.19%), Postives = 191/203 (94.09%), Query Frame = 0


Query: 38  ENQNVLQCKALISFGLNPNEEVESRFPISIPCWLSSEKGQVRLSITRPEVRRHQLLFKSK 97
           +NQNVLQCK LISFGL+PNE++ESR PI IP WLSSEK  VRLSITRPEV+RHQLL+KSK
Sbjct: 4   QNQNVLQCKTLISFGLHPNEKLESRIPILIPRWLSSEKEPVRLSITRPEVQRHQLLYKSK 63

Query: 98  IRVGAGNQEELFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCK 157
           +RV AGNQ E+ DEDDDLCPVDCVREFKTDEEF+KILD+AKENG LVVVDFYRTSCGSCK
Sbjct: 64  MRVNAGNQGEMGDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCK 123

Query: 158 YIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEA 217
           YIEQGFAKLCKGSGDQ+APVIFLKHNVMDEYDEQSEVAERLRI++VPLFHFYKDGVLLEA
Sbjct: 124 YIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKSVPLFHFYKDGVLLEA 183

Query: 218 FPTRDKGRILTAISKYSSSALQI 241
           FPTRDK RILTAI+KYSSS LQI
Sbjct: 184 FPTRDKERILTAITKYSSSPLQI 206

[Close]

BLAST of CcUC08G160280 vs. NCBI nr
Match: XP_008444622.1 (PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis melo])

HSP 1 Score: 365.9 bits (938), Expect = 2.6e-97
Identity = 177/203 (87.19%), Postives = 190/203 (93.60%), Query Frame = 0


Query: 38  ENQNVLQCKALISFGLNPNEEVESRFPISIPCWLSSEKGQVRLSITRPEVRRHQLLFKSK 97
           +NQNVLQCK LISFGL+PNE++ESR PI IP WLSSEK  VRLSITRPEV RHQLL+KSK
Sbjct: 4   QNQNVLQCKTLISFGLHPNEKLESRIPILIPRWLSSEKEPVRLSITRPEVPRHQLLYKSK 63

Query: 98  IRVGAGNQEELFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCK 157
           +RV AGNQ E+ DEDDDLCPVDCVREFKTDEEF+KILD+AKENG LVVVDFYRTSCGSCK
Sbjct: 64  MRVNAGNQGEMGDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCK 123

Query: 158 YIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEA 217
           YIEQGFAKLCKGSGDQ+APVIFLKHNVMDEYDEQSEVAERLRI++VPLFHFYKDGVLLEA
Sbjct: 124 YIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKSVPLFHFYKDGVLLEA 183

Query: 218 FPTRDKGRILTAISKYSSSALQI 241
           FPTRDK RILTAI+KYSSS LQI
Sbjct: 184 FPTRDKERILTAITKYSSSPLQI 206

[Close]

BLAST of CcUC08G160280 vs. NCBI nr
Match: XP_004150883.1 (thioredoxin-like 4, chloroplastic [Cucumis sativus] >XP_011649582.1 thioredoxin-like 4, chloroplastic [Cucumis sativus] >XP_031736609.1 thioredoxin-like 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 365.9 bits (938), Expect = 2.6e-97
Identity = 178/203 (87.68%), Postives = 189/203 (93.10%), Query Frame = 0


Query: 38  ENQNVLQCKALISFGLNPNEEVESRFPISIPCWLSSEKGQVRLSITRPEVRRHQLLFKSK 97
           +NQNVLQCK LISFGLNPNE++E R PI IP WLSSEK  VRLSITRPEV R+QLL+KSK
Sbjct: 4   QNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSK 63

Query: 98  IRVGAGNQEELFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCK 157
           +RV AGNQ EL DEDDDLCPVDCVREFKTDEEF+KILD+AKENG LVVVDFYRTSCGSCK
Sbjct: 64  MRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCK 123

Query: 158 YIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEA 217
           YIEQGFAKLCKGSGDQ+APVIFLKHNVMDEYDEQSEVAERLRI+TVPLFHFYKDGVLLEA
Sbjct: 124 YIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEA 183

Query: 218 FPTRDKGRILTAISKYSSSALQI 241
           FPTRDK RILTAI+KYSSS LQI
Sbjct: 184 FPTRDKERILTAITKYSSSPLQI 206

[Close]

BLAST of CcUC08G160280 vs. NCBI nr
Match: XP_022144174.1 (thioredoxin-like 4, chloroplastic [Momordica charantia])

HSP 1 Score: 340.5 bits (872), Expect = 1.2e-89
Identity = 183/253 (72.33%), Postives = 195/253 (77.08%), Query Frame = 0


Query: 20  GVVSFSRLQLLLCSSSRSEN---------------------------QNVLQCKALISFG 79
           GVVSFSR QLLL S SRSE                            +  + C AL S G
Sbjct: 3   GVVSFSRSQLLLRSPSRSERSFTNNLGKNLRKKRPKSEFGLHICCNAKGRMYCSALFSSG 62

Query: 80  LNPNEEVESRFPISIPCWLSSEKGQVRLSITRPEVR-----RHQLLFKSKIRVGAGNQEE 139
           LNPNEE+ESR PISIP   S EKG VRLSI+RP++      RHQ LF+S+IRV AG+Q  
Sbjct: 63  LNPNEELESRIPISIPS-RSFEKGHVRLSISRPQLPSSLNIRHQFLFESRIRVAAGSQGG 122

Query: 140 LFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLC 199
           L DEDDDLCPVDCVREFKTDE+FLKILDRAKE GALVVVDFYRTSCGSCKYIEQGFAKLC
Sbjct: 123 LSDEDDDLCPVDCVREFKTDEDFLKILDRAKETGALVVVDFYRTSCGSCKYIEQGFAKLC 182

Query: 200 KGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEAFPTRDKGRIL 241
           KGSGD+E PVIFLKHNV+DEYDEQSEVAERLRIRTVPLFHFYKDGVLLEAFPTRDK RIL
Sbjct: 183 KGSGDEETPVIFLKHNVIDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEAFPTRDKERIL 242

[Close]

BLAST of CcUC08G160280 vs. ExPASy Swiss-Prot
Match: Q9C5C5 (Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g07700 PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.8e-56
Identity = 103/133 (77.44%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 104 NQEELFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGF 163
           N  EL DE+DDLCPV+CV EFKTD+E L +L+++KE  +LVVVDFYRT+CGSCKYIEQGF
Sbjct: 70  NLVELSDENDDLCPVECVTEFKTDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGF 129

Query: 164 AKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEAFPTRDK 223
           +KLCK SGDQEAPVIFLKHNV+DEYDEQSEVAERLRI+ VPLFHFYK+GVLLE+F TRDK
Sbjct: 130 SKLCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDK 189

Query: 224 GRILTAISKYSSS 237
            RI  AI KY+SS
Sbjct: 190 ERIDAAILKYTSS 202

[Close]

BLAST of CcUC08G160280 vs. ExPASy Swiss-Prot
Match: Q6YTI3 (Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0567100 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.6e-51
Identity = 91/126 (72.22%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 110 DEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKG 169
           +E+++ CPV+CV EFKT+EE  ++L+RAK  GALVVVDF+R SCGSCKYIEQGF KLCKG
Sbjct: 74  EEEEEFCPVECVTEFKTEEELARVLERAKATGALVVVDFFRPSCGSCKYIEQGFMKLCKG 133

Query: 170 SGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEAFPTRDKGRILTA 229
           SGD  + V+FLKHNV+DEYDEQSEVA+RLRI+ VPLFHFYK+GVLLEAF TRDK RI+ A
Sbjct: 134 SGDHGSSVVFLKHNVIDEYDEQSEVADRLRIKVVPLFHFYKNGVLLEAFATRDKERIIAA 193

Query: 230 ISKYSS 236
           I KY++
Sbjct: 194 IQKYTA 199

[Close]

BLAST of CcUC08G160280 vs. ExPASy Swiss-Prot
Match: Q8LCT3 (Thioredoxin-like 2-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g29670 PE=2 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-08
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 123 EFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKH 182
           +  + EEFL  L  A E   LV+V+FY T C SC+ +   F KLCK +  +   ++FLK 
Sbjct: 107 DIHSTEEFLSALSGAGER--LVIVEFYGTWCASCRAL---FPKLCK-TAVEHPDIVFLKV 166

Query: 183 NVMDEYDEQSEVAERLRIRTVPLFHFYK--DGVL 215
           N    +DE   + + L +R +P FHFY+  DG L
Sbjct: 167 N----FDENKPMCKSLNVRVLPFFHFYRGADGQL 190

[Close]

BLAST of CcUC08G160280 vs. ExPASy Swiss-Prot
Match: P10639 (Thioredoxin OS=Mus musculus OX=10090 GN=Txn PE=1 SV=3)

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-08
Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 121 VREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFL 180
           V+  ++ E F + L  A +   LVVVDF  T CG CK I+  F  LC    D+ + V+FL
Sbjct: 2   VKLIESKEAFQEALAAAGDK--LVVVDFSATWCGPCKMIKPFFHSLC----DKYSNVVFL 61

Query: 181 KHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEAFPTRDKGRILTAISKYS 235
           + +V    D+  +VA    ++ +P F FYK G  +  F   +K ++  +I++Y+
Sbjct: 62  EVDV----DDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105

[Close]

BLAST of CcUC08G160280 vs. ExPASy Swiss-Prot
Match: P80028 (Thioredoxin H-type OS=Chlamydomonas reinhardtii OX=3055 GN=TRXH PE=1 SV=3)

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-08
Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 134 LDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSE 193
           L + KE    +VVDF  T CG CK I   F  L   S D    VIFLK +V    D  + 
Sbjct: 18  LAKGKEEHKPIVVDFTATWCGPCKMIAPLFETL---SNDYAGKVIFLKVDV----DAVAA 77

Query: 194 VAERLRIRTVPLFHFYKDGVLLEAFPTRDKGRILTAISKYSSS 237
           VAE   I  +P FH YKDGV  +      + ++   ++K++++
Sbjct: 78  VAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAAA 113

[Close]

BLAST of CcUC08G160280 vs. ExPASy TrEMBL
Match: A0A5A7UYD0 (Thioredoxin-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00350 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 5.7e-98
Identity = 177/203 (87.19%), Postives = 191/203 (94.09%), Query Frame = 0


Query: 38  ENQNVLQCKALISFGLNPNEEVESRFPISIPCWLSSEKGQVRLSITRPEVRRHQLLFKSK 97
           +NQNVLQCK LISFGL+PNE++ESR PI IP WLSSEK  VRLSITRPEV+RHQLL+KSK
Sbjct: 4   QNQNVLQCKTLISFGLHPNEKLESRIPILIPRWLSSEKEPVRLSITRPEVQRHQLLYKSK 63

Query: 98  IRVGAGNQEELFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCK 157
           +RV AGNQ E+ DEDDDLCPVDCVREFKTDEEF+KILD+AKENG LVVVDFYRTSCGSCK
Sbjct: 64  MRVNAGNQGEMGDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCK 123

Query: 158 YIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEA 217
           YIEQGFAKLCKGSGDQ+APVIFLKHNVMDEYDEQSEVAERLRI++VPLFHFYKDGVLLEA
Sbjct: 124 YIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKSVPLFHFYKDGVLLEA 183

Query: 218 FPTRDKGRILTAISKYSSSALQI 241
           FPTRDK RILTAI+KYSSS LQI
Sbjct: 184 FPTRDKERILTAITKYSSSPLQI 206

[Close]

BLAST of CcUC08G160280 vs. ExPASy TrEMBL
Match: A0A0A0LP39 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G357300 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.3e-97
Identity = 178/203 (87.68%), Postives = 189/203 (93.10%), Query Frame = 0


Query: 38  ENQNVLQCKALISFGLNPNEEVESRFPISIPCWLSSEKGQVRLSITRPEVRRHQLLFKSK 97
           +NQNVLQCK LISFGLNPNE++E R PI IP WLSSEK  VRLSITRPEV R+QLL+KSK
Sbjct: 4   QNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSK 63

Query: 98  IRVGAGNQEELFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCK 157
           +RV AGNQ EL DEDDDLCPVDCVREFKTDEEF+KILD+AKENG LVVVDFYRTSCGSCK
Sbjct: 64  MRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCK 123

Query: 158 YIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEA 217
           YIEQGFAKLCKGSGDQ+APVIFLKHNVMDEYDEQSEVAERLRI+TVPLFHFYKDGVLLEA
Sbjct: 124 YIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEA 183

Query: 218 FPTRDKGRILTAISKYSSSALQI 241
           FPTRDK RILTAI+KYSSS LQI
Sbjct: 184 FPTRDKERILTAITKYSSSPLQI 206

[Close]

BLAST of CcUC08G160280 vs. ExPASy TrEMBL
Match: A0A1S3BBI1 (thioredoxin-like 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487891 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.3e-97
Identity = 177/203 (87.19%), Postives = 190/203 (93.60%), Query Frame = 0


Query: 38  ENQNVLQCKALISFGLNPNEEVESRFPISIPCWLSSEKGQVRLSITRPEVRRHQLLFKSK 97
           +NQNVLQCK LISFGL+PNE++ESR PI IP WLSSEK  VRLSITRPEV RHQLL+KSK
Sbjct: 4   QNQNVLQCKTLISFGLHPNEKLESRIPILIPRWLSSEKEPVRLSITRPEVPRHQLLYKSK 63

Query: 98  IRVGAGNQEELFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCK 157
           +RV AGNQ E+ DEDDDLCPVDCVREFKTDEEF+KILD+AKENG LVVVDFYRTSCGSCK
Sbjct: 64  MRVNAGNQGEMGDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCK 123

Query: 158 YIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEA 217
           YIEQGFAKLCKGSGDQ+APVIFLKHNVMDEYDEQSEVAERLRI++VPLFHFYKDGVLLEA
Sbjct: 124 YIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKSVPLFHFYKDGVLLEA 183

Query: 218 FPTRDKGRILTAISKYSSSALQI 241
           FPTRDK RILTAI+KYSSS LQI
Sbjct: 184 FPTRDKERILTAITKYSSSPLQI 206

[Close]

BLAST of CcUC08G160280 vs. ExPASy TrEMBL
Match: A0A6J1CRI9 (thioredoxin-like 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013927 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 5.7e-90
Identity = 183/253 (72.33%), Postives = 195/253 (77.08%), Query Frame = 0


Query: 20  GVVSFSRLQLLLCSSSRSEN---------------------------QNVLQCKALISFG 79
           GVVSFSR QLLL S SRSE                            +  + C AL S G
Sbjct: 3   GVVSFSRSQLLLRSPSRSERSFTNNLGKNLRKKRPKSEFGLHICCNAKGRMYCSALFSSG 62

Query: 80  LNPNEEVESRFPISIPCWLSSEKGQVRLSITRPEVR-----RHQLLFKSKIRVGAGNQEE 139
           LNPNEE+ESR PISIP   S EKG VRLSI+RP++      RHQ LF+S+IRV AG+Q  
Sbjct: 63  LNPNEELESRIPISIPS-RSFEKGHVRLSISRPQLPSSLNIRHQFLFESRIRVAAGSQGG 122

Query: 140 LFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLC 199
           L DEDDDLCPVDCVREFKTDE+FLKILDRAKE GALVVVDFYRTSCGSCKYIEQGFAKLC
Sbjct: 123 LSDEDDDLCPVDCVREFKTDEDFLKILDRAKETGALVVVDFYRTSCGSCKYIEQGFAKLC 182

Query: 200 KGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEAFPTRDKGRIL 241
           KGSGD+E PVIFLKHNV+DEYDEQSEVAERLRIRTVPLFHFYKDGVLLEAFPTRDK RIL
Sbjct: 183 KGSGDEETPVIFLKHNVIDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEAFPTRDKERIL 242

[Close]

BLAST of CcUC08G160280 vs. ExPASy TrEMBL
Match: A0A6J1GH82 (thioredoxin-like 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454145 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 5.5e-85
Identity = 169/226 (74.78%), Postives = 191/226 (84.51%), Query Frame = 0


Query: 21  VVSFSRLQLLLCSSSRSENQNVLQCKALISFGLNPNEEVESR-FPISIPCWLSSEKGQVR 80
           V S ++ Q+L  +  R +NQNVL+CKAL+S G     ++ESR  PISIP WL SE   VR
Sbjct: 26  VHSLNKTQILYVAMQR-QNQNVLKCKALLSVG-----KLESRIIPISIPFWL-SENPHVR 85

Query: 81  LSITRPEVR-----RHQLLFKSKIRVGAGNQEELFDEDDDLCPVDCVREFKTDEEFLKIL 140
           LSITRPE       RH+L+FKSK RV AGNQ  L DEDDDLCPV+CVREFKTDEEF++IL
Sbjct: 86  LSITRPEAPPYLSIRHELMFKSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRIL 145

Query: 141 DRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEV 200
           +RAKE+GALVVVDFYRTSCGSCKYIEQGFAKLC+GSGDQEAPVIFLKHNV+DEYDEQSEV
Sbjct: 146 ERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEV 205

Query: 201 AERLRIRTVPLFHFYKDGVLLEAFPTRDKGRILTAISKYSSSALQI 241
           AERLRI+TVPLFHFYKDGVLLEAFPTRDK RIL AI+KYSS+ALQ+
Sbjct: 206 AERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSSTALQL 244

[Close]

BLAST of CcUC08G160280 vs. TAIR 10
Match: AT1G07700.1 (Thioredoxin superfamily protein )

HSP 1 Score: 218.8 bits (556), Expect = 4.8e-57
Identity = 103/133 (77.44%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 104 NQEELFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGF 163
           N  EL DE+DDLCPV+CV EFKTD+E L +L+++KE  +LVVVDFYRT+CGSCKYIEQGF
Sbjct: 70  NLVELSDENDDLCPVECVTEFKTDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGF 129

Query: 164 AKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEAFPTRDK 223
           +KLCK SGDQEAPVIFLKHNV+DEYDEQSEVAERLRI+ VPLFHFYK+GVLLE+F TRDK
Sbjct: 130 SKLCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDK 189

Query: 224 GRILTAISKYSSS 237
            RI  AI KY+SS
Sbjct: 190 ERIDAAILKYTSS 202

[Close]

BLAST of CcUC08G160280 vs. TAIR 10
Match: AT1G07700.3 (Thioredoxin superfamily protein )

HSP 1 Score: 218.8 bits (556), Expect = 4.8e-57
Identity = 103/133 (77.44%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 104 NQEELFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGF 163
           N  EL DE+DDLCPV+CV EFKTD+E L +L+++KE  +LVVVDFYRT+CGSCKYIEQGF
Sbjct: 83  NLVELSDENDDLCPVECVTEFKTDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGF 142

Query: 164 AKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEAFPTRDK 223
           +KLCK SGDQEAPVIFLKHNV+DEYDEQSEVAERLRI+ VPLFHFYK+GVLLE+F TRDK
Sbjct: 143 SKLCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDK 202

Query: 224 GRILTAISKYSSS 237
            RI  AI KY+SS
Sbjct: 203 ERIDAAILKYTSS 215

[Close]

BLAST of CcUC08G160280 vs. TAIR 10
Match: AT1G07700.2 (Thioredoxin superfamily protein )

HSP 1 Score: 173.7 bits (439), Expect = 1.8e-43
Identity = 79/102 (77.45%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 104 NQEELFDEDDDLCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGF 163
           N  EL DE+DDLCPV+CV EFKTD+E L +L+++KE  +LVVVDFYRT+CGSCKYIEQGF
Sbjct: 70  NLVELSDENDDLCPVECVTEFKTDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGF 129

Query: 164 AKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIRTVPL 206
           +KLCK SGDQEAPVIFLKHNV+DEYDEQSEVAERLRI+ +PL
Sbjct: 130 SKLCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKVIPL 171

[Close]

BLAST of CcUC08G160280 vs. TAIR 10
Match: AT4G29670.1 (atypical CYS HIS rich thioredoxin 2 )

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-09
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 123 EFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKH 182
           +  + EEFL  L  A E   LV+V+FY T C SC+ +   F KLCK +  +   ++FLK 
Sbjct: 107 DIHSTEEFLSALSGAGER--LVIVEFYGTWCASCRAL---FPKLCK-TAVEHPDIVFLKV 166

Query: 183 NVMDEYDEQSEVAERLRIRTVPLFHFYK--DGVL 215
           N    +DE   + + L +R +P FHFY+  DG L
Sbjct: 167 N----FDENKPMCKSLNVRVLPFFHFYRGADGQL 190

[Close]

BLAST of CcUC08G160280 vs. TAIR 10
Match: AT4G29670.2 (atypical CYS HIS rich thioredoxin 2 )

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-09
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 123 EFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKH 182
           +  + EEFL  L  A E   LV+V+FY T C SC+ +   F KLCK +  +   ++FLK 
Sbjct: 107 DIHSTEEFLSALSGAGER--LVIVEFYGTWCASCRAL---FPKLCK-TAVEHPDIVFLKV 166

Query: 183 NVMDEYDEQSEVAERLRIRTVPLFHFYK--DGVL 215
           N    +DE   + + L +R +P FHFY+  DG L
Sbjct: 167 N----FDENKPMCKSLNVRVLPFFHFYRGADGQL 190

The following BLAST results are available for this feature:

BLAST of CcUC08G160280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886222.1	2.1e-102	92.61	thioredoxin-like 4, chloroplastic [Benincasa hispida] >XP_038886223.1 thioredoxi...	[more]
KAA0060902.1	1.2e-97	87.19	thioredoxin-like 4 [Cucumis melo var. makuwa]	[more]
XP_008444622.1	2.6e-97	87.19	PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis melo]	[more]
XP_004150883.1	2.6e-97	87.68	thioredoxin-like 4, chloroplastic [Cucumis sativus] >XP_011649582.1 thioredoxin-...	[more]
XP_022144174.1	1.2e-89	72.33	thioredoxin-like 4, chloroplastic [Momordica charantia]	[more]

BLAST of CcUC08G160280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5C5	6.8e-56	77.44	Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g07700 P...	[more]
Q6YTI3	6.6e-51	72.22	Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
Q8LCT3	1.8e-08	39.36	Thioredoxin-like 2-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g29670...	[more]
P10639	3.1e-08	33.33	Thioredoxin OS=Mus musculus OX=10090 GN=Txn PE=1 SV=3	[more]
P80028	3.1e-08	35.92	Thioredoxin H-type OS=Chlamydomonas reinhardtii OX=3055 GN=TRXH PE=1 SV=3	[more]

BLAST of CcUC08G160280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYD0	5.7e-98	87.19	Thioredoxin-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G0...	[more]
A0A0A0LP39	1.3e-97	87.68	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G357300...	[more]
A0A1S3BBI1	1.3e-97	87.19	thioredoxin-like 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487891 PE=4 S...	[more]
A0A6J1CRI9	5.7e-90	72.33	thioredoxin-like 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013927...	[more]
A0A6J1GH82	5.5e-85	74.78	thioredoxin-like 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454145 ...	[more]

BLAST of CcUC08G160280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07700.1	4.8e-57	77.44	Thioredoxin superfamily protein	[more]
AT1G07700.3	4.8e-57	77.44	Thioredoxin superfamily protein	[more]
AT1G07700.2	1.8e-43	77.45	Thioredoxin superfamily protein	[more]
AT4G29670.1	1.3e-09	39.36	atypical CYS HIS rich thioredoxin 2	[more]
AT4G29670.2	1.3e-09	39.36	atypical CYS HIS rich thioredoxin 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 126..218 e-value: 1.4E-10 score: 41.1
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 96..235 score: 9.080061
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 106..237 e-value: 2.2E-18 score: 68.2
None	No IPR available	CDD	cd02947	TRX_family	coord: 128..218 e-value: 1.5631E-18 score: 75.6724
IPR044176	Thioredoxin-like 4, chloroplastic	PANTHER	PTHR47912	THIOREDOXIN-LIKE 4, CHLOROPLASTIC	coord: 93..237
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 118..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G160280.1	CcUC08G160280.1	mRNA