Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTCTCTCAACGTCAAGCTTGGGCTGAGAATGAAGCAAATCAATTGATAAAGAAGTATGATAGAAATGGTGATGGTGTTCTCACTAAAGAAGAGCTTCAATCTTTCTTCCACCACCGTTCAACTCAACTCAACAATACGAGGTTCGTGTCGTCTAGGATGATTTCAAAAACTAACAATCTTGCGCATAACCTTAGCTCAAGCACTCATATGAATCCACAAAAGCAGTTGCAAGACAAAGCTCAAAATTCCTCGACAAAAGTATTTGATAGAAAGCAATCCAATGCGTCCCTTAGTCGAGAGCAGATAAAGGCGATTTTTAAATGTCATGACAGCGACAAAGATGGTTTTCTCAACATACGAGATTTAACAAAAGCTTTTGGCTCTCTAGGCTCAATTACTCCATTCTACAAAGCTCAATACGCCATGACTTATGCTGATGCTGACCAAGATGGTCTTATCAGTGAAGTCGAGCTTGACAAACTCGTTGATTATGCAAATAAAATTATCAAGAAAAAATGA
mRNA sequence
ATGTCGGTCTCTCAACGTCAAGCTTGGGCTGAGAATGAAGCAAATCAATTGATAAAGAAGTATGATAGAAATGGTGATGGTGTTCTCACTAAAGAAGAGCTTCAATCTTTCTTCCACCACCGTTCAACTCAACTCAACAATACGAGGTTCGTGTCGTCTAGGATGATTTCAAAAACTAACAATCTTGCGCATAACCTTAGCTCAAGCACTCATATGAATCCACAAAAGCAGTTGCAAGACAAAGCTCAAAATTCCTCGACAAAAGTATTTGATAGAAAGCAATCCAATGCGTCCCTTAGTCGAGAGCAGATAAAGGCGATTTTTAAATGTCATGACAGCGACAAAGATGGTTTTCTCAACATACGAGATTTAACAAAAGCTTTTGGCTCTCTAGGCTCAATTACTCCATTCTACAAAGCTCAATACGCCATGACTTATGCTGATGCTGACCAAGATGGTCTTATCAGTGAAGTCGAGCTTGACAAACTCGTTGATTATGCAAATAAAATTATCAAGAAAAAATGA
Coding sequence (CDS)
ATGTCGGTCTCTCAACGTCAAGCTTGGGCTGAGAATGAAGCAAATCAATTGATAAAGAAGTATGATAGAAATGGTGATGGTGTTCTCACTAAAGAAGAGCTTCAATCTTTCTTCCACCACCGTTCAACTCAACTCAACAATACGAGGTTCGTGTCGTCTAGGATGATTTCAAAAACTAACAATCTTGCGCATAACCTTAGCTCAAGCACTCATATGAATCCACAAAAGCAGTTGCAAGACAAAGCTCAAAATTCCTCGACAAAAGTATTTGATAGAAAGCAATCCAATGCGTCCCTTAGTCGAGAGCAGATAAAGGCGATTTTTAAATGTCATGACAGCGACAAAGATGGTTTTCTCAACATACGAGATTTAACAAAAGCTTTTGGCTCTCTAGGCTCAATTACTCCATTCTACAAAGCTCAATACGCCATGACTTATGCTGATGCTGACCAAGATGGTCTTATCAGTGAAGTCGAGCTTGACAAACTCGTTGATTATGCAAATAAAATTATCAAGAAAAAATGA
Protein sequence
MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFHHRSTQLNNTRFVSSRMISKTNNLAHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDGFLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK
Homology
BLAST of CcUC08G160140 vs. NCBI nr
Match:
XP_038886759.1 (probable calcium-binding protein CML11 [Benincasa hispida])
HSP 1 Score: 259.6 bits (662), Expect = 1.9e-65
Identity = 140/177 (79.10%), Postives = 150/177 (84.75%), Query Frame = 0
Query: 1 MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFHH--RSTQLNNTRFVSSRMISK 60
MSVSQ QAWAENEAN+LIKKYDRNGDGVL KEELQSF H STQLNNTR V SRMI K
Sbjct: 1 MSVSQLQAWAENEANELIKKYDRNGDGVLAKEELQSFLHDTCSSTQLNNTRCVLSRMIPK 60
Query: 61 T-NNLAHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
T NNL H LSS+THMN +KQL+DK QNSSTK DRKQSN SREQIK IFK HDS+KDG
Sbjct: 61 TNNNLVHKLSSNTHMNQKKQLRDKIQNSSTKALDRKQSNIPPSREQIKEIFKYHDSNKDG 120
Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
FLNIR+LTK FGSLGS+ PFYKA YAM YADAD+DGLISEVELD+L+DY NKIIKKK
Sbjct: 121 FLNIRELTKTFGSLGSVIPFYKAHYAMAYADADKDGLISEVELDELIDYTNKIIKKK 177
BLAST of CcUC08G160140 vs. NCBI nr
Match:
XP_004152801.1 (probable calcium-binding protein CML11 [Cucumis sativus] >KGN62526.1 hypothetical protein Csa_021903 [Cucumis sativus])
HSP 1 Score: 221.1 bits (562), Expect = 7.5e-54
Identity = 125/177 (70.62%), Postives = 141/177 (79.66%), Query Frame = 0
Query: 1 MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
MSVS QAWA+NEAN+LIKKYDRNGDGVLTKEELQSF STQLNN R VSS + K
Sbjct: 1 MSVSHLQAWAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVPK 60
Query: 61 TN-NLAHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
TN NLA +SS+T + P+KQL DKAQ SS KQSN LSREQIK IFK HDS+KDG
Sbjct: 61 TNENLAQKVSSNTCITPKKQLLDKAQGSS------KQSNVPLSREQIKEIFKYHDSNKDG 120
Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
FL+IR+LTKAF S+GSI PF KA+YAM YAD D+DGL+SE ELDKL+DYA+KIIKKK
Sbjct: 121 FLSIRELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171
BLAST of CcUC08G160140 vs. NCBI nr
Match:
XP_023538396.1 (probable calcium-binding protein CML11 isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 220.7 bits (561), Expect = 9.8e-54
Identity = 126/177 (71.19%), Postives = 140/177 (79.10%), Query Frame = 0
Query: 1 MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
MSVS QAWAENEAN+L+KKYDRNGDGVLTKEELQ F STQLNN F+S I K
Sbjct: 1 MSVSILQAWAENEANELMKKYDRNGDGVLTKEELQFFLRDVRGSTQLNNQGFLSK--IPK 60
Query: 61 TNNL-AHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
TN+ AH LSS+ H NP+ Q+Q KA NSSTKVF K SN LSREQIK IFK +DSDKDG
Sbjct: 61 TNDKGAHKLSSNAHTNPKIQVQGKATNSSTKVFGEKVSNVPLSREQIKKIFKYYDSDKDG 120
Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
FLN R++TKAF LGSI PFYKAQYAMT+ADA+ DGLISE EL+KLVDYA KII+KK
Sbjct: 121 FLNRREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLVDYAGKIIQKK 175
BLAST of CcUC08G160140 vs. NCBI nr
Match:
XP_023002691.1 (probable calcium-binding protein CML11 [Cucurbita maxima])
HSP 1 Score: 218.0 bits (554), Expect = 6.4e-53
Identity = 123/177 (69.49%), Postives = 139/177 (78.53%), Query Frame = 0
Query: 1 MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
MSVS Q WAENEAN+L+KKYD+NGDG+LTKEELQ F STQLN F+S I K
Sbjct: 1 MSVSILQTWAENEANELMKKYDKNGDGILTKEELQVFLRDVRGSTQLNYQGFLSK--IPK 60
Query: 61 TNNL-AHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
TN+ AH LSS+TH NP+ Q+QDK SSTKV K SN SLSREQIK IFK +DSDKDG
Sbjct: 61 TNDKGAHKLSSNTHTNPKIQVQDKVTKSSTKVLSEKVSNVSLSREQIKKIFKYYDSDKDG 120
Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
FLNIR++TKAF LGSI PFYKAQYAMT+ADA+ DGLISE EL+KL+DYA KIIKKK
Sbjct: 121 FLNIREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISETELEKLIDYACKIIKKK 175
BLAST of CcUC08G160140 vs. NCBI nr
Match:
XP_022951798.1 (probable calcium-binding protein CML11 [Cucurbita moschata])
HSP 1 Score: 215.7 bits (548), Expect = 3.2e-52
Identity = 123/177 (69.49%), Postives = 138/177 (77.97%), Query Frame = 0
Query: 1 MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
MSVS QAWAENEAN+L+KKYDRNGDGVLTKEELQ F STQLN+ RF+S I K
Sbjct: 1 MSVSILQAWAENEANELMKKYDRNGDGVLTKEELQVFLRDVRGSTQLNHQRFLSK--IPK 60
Query: 61 TNNL-AHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
TN+ AH LSS+ H NP+ Q+Q A SSTKV K SN LSREQIK IFK +DSDKDG
Sbjct: 61 TNDKGAHQLSSNAHTNPKIQVQGTATKSSTKVLSEKVSNVPLSREQIKKIFKYYDSDKDG 120
Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
FLN R++TKAF LGSI PFYKAQYAMT+ADA+ DGLISE EL+KL+DYA KIIKKK
Sbjct: 121 FLNTREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLIDYACKIIKKK 175
BLAST of CcUC08G160140 vs. ExPASy TrEMBL
Match:
A0A0A0LRC8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359950 PE=4 SV=1)
HSP 1 Score: 221.1 bits (562), Expect = 3.7e-54
Identity = 125/177 (70.62%), Postives = 141/177 (79.66%), Query Frame = 0
Query: 1 MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
MSVS QAWA+NEAN+LIKKYDRNGDGVLTKEELQSF STQLNN R VSS + K
Sbjct: 1 MSVSHLQAWAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVPK 60
Query: 61 TN-NLAHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
TN NLA +SS+T + P+KQL DKAQ SS KQSN LSREQIK IFK HDS+KDG
Sbjct: 61 TNENLAQKVSSNTCITPKKQLLDKAQGSS------KQSNVPLSREQIKEIFKYHDSNKDG 120
Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
FL+IR+LTKAF S+GSI PF KA+YAM YAD D+DGL+SE ELDKL+DYA+KIIKKK
Sbjct: 121 FLSIRELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171
BLAST of CcUC08G160140 vs. ExPASy TrEMBL
Match:
A0A6J1KM01 (probable calcium-binding protein CML11 OS=Cucurbita maxima OX=3661 GN=LOC111496473 PE=4 SV=1)
HSP 1 Score: 218.0 bits (554), Expect = 3.1e-53
Identity = 123/177 (69.49%), Postives = 139/177 (78.53%), Query Frame = 0
Query: 1 MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
MSVS Q WAENEAN+L+KKYD+NGDG+LTKEELQ F STQLN F+S I K
Sbjct: 1 MSVSILQTWAENEANELMKKYDKNGDGILTKEELQVFLRDVRGSTQLNYQGFLSK--IPK 60
Query: 61 TNNL-AHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
TN+ AH LSS+TH NP+ Q+QDK SSTKV K SN SLSREQIK IFK +DSDKDG
Sbjct: 61 TNDKGAHKLSSNTHTNPKIQVQDKVTKSSTKVLSEKVSNVSLSREQIKKIFKYYDSDKDG 120
Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
FLNIR++TKAF LGSI PFYKAQYAMT+ADA+ DGLISE EL+KL+DYA KIIKKK
Sbjct: 121 FLNIREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISETELEKLIDYACKIIKKK 175
BLAST of CcUC08G160140 vs. ExPASy TrEMBL
Match:
A0A6J1GIQ8 (probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC111454532 PE=4 SV=1)
HSP 1 Score: 215.7 bits (548), Expect = 1.5e-52
Identity = 123/177 (69.49%), Postives = 138/177 (77.97%), Query Frame = 0
Query: 1 MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
MSVS QAWAENEAN+L+KKYDRNGDGVLTKEELQ F STQLN+ RF+S I K
Sbjct: 1 MSVSILQAWAENEANELMKKYDRNGDGVLTKEELQVFLRDVRGSTQLNHQRFLSK--IPK 60
Query: 61 TNNL-AHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
TN+ AH LSS+ H NP+ Q+Q A SSTKV K SN LSREQIK IFK +DSDKDG
Sbjct: 61 TNDKGAHQLSSNAHTNPKIQVQGTATKSSTKVLSEKVSNVPLSREQIKKIFKYYDSDKDG 120
Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
FLN R++TKAF LGSI PFYKAQYAMT+ADA+ DGLISE EL+KL+DYA KIIKKK
Sbjct: 121 FLNTREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLIDYACKIIKKK 175
BLAST of CcUC08G160140 vs. ExPASy TrEMBL
Match:
A0A6J1GII5 (probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC111454483 PE=4 SV=1)
HSP 1 Score: 212.6 bits (540), Expect = 1.3e-51
Identity = 121/177 (68.36%), Postives = 138/177 (77.97%), Query Frame = 0
Query: 1 MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
MSVS QAWAEN+AN+LIKKYD+NGDGVLTKEELQ F STQLNN F+S I +
Sbjct: 1 MSVSILQAWAENKANELIKKYDKNGDGVLTKEELQVFLRDVRGSTQLNNQGFLSK--IPR 60
Query: 61 TNNL-AHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
TN+ AH L+S+ NP+ Q+Q KA SSTKV K SN LSREQIK IFK +DSDKDG
Sbjct: 61 TNDKGAHKLNSNPRTNPKIQVQSKATKSSTKVLSEKVSNVPLSREQIKKIFKYYDSDKDG 120
Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
FLNIR++TKAF LGSI PFYKAQYAMT+ADA+ DGLISE EL+KL+DYA KIIKKK
Sbjct: 121 FLNIREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLIDYAYKIIKKK 175
BLAST of CcUC08G160140 vs. ExPASy TrEMBL
Match:
A0A5A7V4R9 (Putative calcium-binding protein CML11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00180 PE=4 SV=1)
HSP 1 Score: 210.7 bits (535), Expect = 4.9e-51
Identity = 120/175 (68.57%), Postives = 137/175 (78.29%), Query Frame = 0
Query: 1 MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFHHRSTQLNNTRFVSSRMISKTN 60
MSVS QAWA+ EA++LIKKYDRNGDGVLTKEELQSF H +L N RFVSS I KTN
Sbjct: 1 MSVSHLQAWAKIEASELIKKYDRNGDGVLTKEELQSFLH--DARLKNIRFVSSSTIPKTN 60
Query: 61 -NLAHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDGFL 120
NL +SS+T + P+KQL DKAQ+S +QSN LSREQIK IFK HDS+KDGFL
Sbjct: 61 ENLDQKVSSNTRIKPKKQLLDKAQDS------LRQSNVPLSREQIKEIFKYHDSNKDGFL 120
Query: 121 NIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
+IR+LTKAFGSLGSI PF KA++AM YAD D+DGLISE EL KL+DYA KIIKKK
Sbjct: 121 SIRELTKAFGSLGSIVPFAKARHAMAYADVDEDGLISEAELHKLIDYAEKIIKKK 167
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038886759.1 | 1.9e-65 | 79.10 | probable calcium-binding protein CML11 [Benincasa hispida] | [more] |
XP_004152801.1 | 7.5e-54 | 70.62 | probable calcium-binding protein CML11 [Cucumis sativus] >KGN62526.1 hypothetica... | [more] |
XP_023538396.1 | 9.8e-54 | 71.19 | probable calcium-binding protein CML11 isoform X1 [Cucurbita pepo subsp. pepo] | [more] |
XP_023002691.1 | 6.4e-53 | 69.49 | probable calcium-binding protein CML11 [Cucurbita maxima] | [more] |
XP_022951798.1 | 3.2e-52 | 69.49 | probable calcium-binding protein CML11 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LRC8 | 3.7e-54 | 70.62 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359950 PE=4 SV=1 | [more] |
A0A6J1KM01 | 3.1e-53 | 69.49 | probable calcium-binding protein CML11 OS=Cucurbita maxima OX=3661 GN=LOC1114964... | [more] |
A0A6J1GIQ8 | 1.5e-52 | 69.49 | probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC11145... | [more] |
A0A6J1GII5 | 1.3e-51 | 68.36 | probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC11145... | [more] |
A0A5A7V4R9 | 4.9e-51 | 68.57 | Putative calcium-binding protein CML11 OS=Cucumis melo var. makuwa OX=1194695 GN... | [more] |
Match Name | E-value | Identity | Description | |