CcUC08G160140 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G160140
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptioncalmodulin-like protein 12
LocationCicolChr08: 27970060 .. 27970584 (-)
RNA-Seq ExpressionCcUC08G160140
SyntenyCcUC08G160140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTCTCTCAACGTCAAGCTTGGGCTGAGAATGAAGCAAATCAATTGATAAAGAAGTATGATAGAAATGGTGATGGTGTTCTCACTAAAGAAGAGCTTCAATCTTTCTTCCACCACCGTTCAACTCAACTCAACAATACGAGGTTCGTGTCGTCTAGGATGATTTCAAAAACTAACAATCTTGCGCATAACCTTAGCTCAAGCACTCATATGAATCCACAAAAGCAGTTGCAAGACAAAGCTCAAAATTCCTCGACAAAAGTATTTGATAGAAAGCAATCCAATGCGTCCCTTAGTCGAGAGCAGATAAAGGCGATTTTTAAATGTCATGACAGCGACAAAGATGGTTTTCTCAACATACGAGATTTAACAAAAGCTTTTGGCTCTCTAGGCTCAATTACTCCATTCTACAAAGCTCAATACGCCATGACTTATGCTGATGCTGACCAAGATGGTCTTATCAGTGAAGTCGAGCTTGACAAACTCGTTGATTATGCAAATAAAATTATCAAGAAAAAATGA

mRNA sequence

ATGTCGGTCTCTCAACGTCAAGCTTGGGCTGAGAATGAAGCAAATCAATTGATAAAGAAGTATGATAGAAATGGTGATGGTGTTCTCACTAAAGAAGAGCTTCAATCTTTCTTCCACCACCGTTCAACTCAACTCAACAATACGAGGTTCGTGTCGTCTAGGATGATTTCAAAAACTAACAATCTTGCGCATAACCTTAGCTCAAGCACTCATATGAATCCACAAAAGCAGTTGCAAGACAAAGCTCAAAATTCCTCGACAAAAGTATTTGATAGAAAGCAATCCAATGCGTCCCTTAGTCGAGAGCAGATAAAGGCGATTTTTAAATGTCATGACAGCGACAAAGATGGTTTTCTCAACATACGAGATTTAACAAAAGCTTTTGGCTCTCTAGGCTCAATTACTCCATTCTACAAAGCTCAATACGCCATGACTTATGCTGATGCTGACCAAGATGGTCTTATCAGTGAAGTCGAGCTTGACAAACTCGTTGATTATGCAAATAAAATTATCAAGAAAAAATGA

Coding sequence (CDS)

ATGTCGGTCTCTCAACGTCAAGCTTGGGCTGAGAATGAAGCAAATCAATTGATAAAGAAGTATGATAGAAATGGTGATGGTGTTCTCACTAAAGAAGAGCTTCAATCTTTCTTCCACCACCGTTCAACTCAACTCAACAATACGAGGTTCGTGTCGTCTAGGATGATTTCAAAAACTAACAATCTTGCGCATAACCTTAGCTCAAGCACTCATATGAATCCACAAAAGCAGTTGCAAGACAAAGCTCAAAATTCCTCGACAAAAGTATTTGATAGAAAGCAATCCAATGCGTCCCTTAGTCGAGAGCAGATAAAGGCGATTTTTAAATGTCATGACAGCGACAAAGATGGTTTTCTCAACATACGAGATTTAACAAAAGCTTTTGGCTCTCTAGGCTCAATTACTCCATTCTACAAAGCTCAATACGCCATGACTTATGCTGATGCTGACCAAGATGGTCTTATCAGTGAAGTCGAGCTTGACAAACTCGTTGATTATGCAAATAAAATTATCAAGAAAAAATGA

Protein sequence

MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFHHRSTQLNNTRFVSSRMISKTNNLAHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDGFLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK
Homology
BLAST of CcUC08G160140 vs. NCBI nr
Match: XP_038886759.1 (probable calcium-binding protein CML11 [Benincasa hispida])

HSP 1 Score: 259.6 bits (662), Expect = 1.9e-65
Identity = 140/177 (79.10%), Postives = 150/177 (84.75%), Query Frame = 0

Query: 1   MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFHH--RSTQLNNTRFVSSRMISK 60
           MSVSQ QAWAENEAN+LIKKYDRNGDGVL KEELQSF H    STQLNNTR V SRMI K
Sbjct: 1   MSVSQLQAWAENEANELIKKYDRNGDGVLAKEELQSFLHDTCSSTQLNNTRCVLSRMIPK 60

Query: 61  T-NNLAHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
           T NNL H LSS+THMN +KQL+DK QNSSTK  DRKQSN   SREQIK IFK HDS+KDG
Sbjct: 61  TNNNLVHKLSSNTHMNQKKQLRDKIQNSSTKALDRKQSNIPPSREQIKEIFKYHDSNKDG 120

Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
           FLNIR+LTK FGSLGS+ PFYKA YAM YADAD+DGLISEVELD+L+DY NKIIKKK
Sbjct: 121 FLNIRELTKTFGSLGSVIPFYKAHYAMAYADADKDGLISEVELDELIDYTNKIIKKK 177

BLAST of CcUC08G160140 vs. NCBI nr
Match: XP_004152801.1 (probable calcium-binding protein CML11 [Cucumis sativus] >KGN62526.1 hypothetical protein Csa_021903 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 7.5e-54
Identity = 125/177 (70.62%), Postives = 141/177 (79.66%), Query Frame = 0

Query: 1   MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
           MSVS  QAWA+NEAN+LIKKYDRNGDGVLTKEELQSF      STQLNN R VSS  + K
Sbjct: 1   MSVSHLQAWAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVPK 60

Query: 61  TN-NLAHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
           TN NLA  +SS+T + P+KQL DKAQ SS      KQSN  LSREQIK IFK HDS+KDG
Sbjct: 61  TNENLAQKVSSNTCITPKKQLLDKAQGSS------KQSNVPLSREQIKEIFKYHDSNKDG 120

Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
           FL+IR+LTKAF S+GSI PF KA+YAM YAD D+DGL+SE ELDKL+DYA+KIIKKK
Sbjct: 121 FLSIRELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of CcUC08G160140 vs. NCBI nr
Match: XP_023538396.1 (probable calcium-binding protein CML11 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.7 bits (561), Expect = 9.8e-54
Identity = 126/177 (71.19%), Postives = 140/177 (79.10%), Query Frame = 0

Query: 1   MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
           MSVS  QAWAENEAN+L+KKYDRNGDGVLTKEELQ F      STQLNN  F+S   I K
Sbjct: 1   MSVSILQAWAENEANELMKKYDRNGDGVLTKEELQFFLRDVRGSTQLNNQGFLSK--IPK 60

Query: 61  TNNL-AHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
           TN+  AH LSS+ H NP+ Q+Q KA NSSTKVF  K SN  LSREQIK IFK +DSDKDG
Sbjct: 61  TNDKGAHKLSSNAHTNPKIQVQGKATNSSTKVFGEKVSNVPLSREQIKKIFKYYDSDKDG 120

Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
           FLN R++TKAF  LGSI PFYKAQYAMT+ADA+ DGLISE EL+KLVDYA KII+KK
Sbjct: 121 FLNRREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLVDYAGKIIQKK 175

BLAST of CcUC08G160140 vs. NCBI nr
Match: XP_023002691.1 (probable calcium-binding protein CML11 [Cucurbita maxima])

HSP 1 Score: 218.0 bits (554), Expect = 6.4e-53
Identity = 123/177 (69.49%), Postives = 139/177 (78.53%), Query Frame = 0

Query: 1   MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
           MSVS  Q WAENEAN+L+KKYD+NGDG+LTKEELQ F      STQLN   F+S   I K
Sbjct: 1   MSVSILQTWAENEANELMKKYDKNGDGILTKEELQVFLRDVRGSTQLNYQGFLSK--IPK 60

Query: 61  TNNL-AHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
           TN+  AH LSS+TH NP+ Q+QDK   SSTKV   K SN SLSREQIK IFK +DSDKDG
Sbjct: 61  TNDKGAHKLSSNTHTNPKIQVQDKVTKSSTKVLSEKVSNVSLSREQIKKIFKYYDSDKDG 120

Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
           FLNIR++TKAF  LGSI PFYKAQYAMT+ADA+ DGLISE EL+KL+DYA KIIKKK
Sbjct: 121 FLNIREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISETELEKLIDYACKIIKKK 175

BLAST of CcUC08G160140 vs. NCBI nr
Match: XP_022951798.1 (probable calcium-binding protein CML11 [Cucurbita moschata])

HSP 1 Score: 215.7 bits (548), Expect = 3.2e-52
Identity = 123/177 (69.49%), Postives = 138/177 (77.97%), Query Frame = 0

Query: 1   MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
           MSVS  QAWAENEAN+L+KKYDRNGDGVLTKEELQ F      STQLN+ RF+S   I K
Sbjct: 1   MSVSILQAWAENEANELMKKYDRNGDGVLTKEELQVFLRDVRGSTQLNHQRFLSK--IPK 60

Query: 61  TNNL-AHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
           TN+  AH LSS+ H NP+ Q+Q  A  SSTKV   K SN  LSREQIK IFK +DSDKDG
Sbjct: 61  TNDKGAHQLSSNAHTNPKIQVQGTATKSSTKVLSEKVSNVPLSREQIKKIFKYYDSDKDG 120

Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
           FLN R++TKAF  LGSI PFYKAQYAMT+ADA+ DGLISE EL+KL+DYA KIIKKK
Sbjct: 121 FLNTREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLIDYACKIIKKK 175

BLAST of CcUC08G160140 vs. ExPASy TrEMBL
Match: A0A0A0LRC8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.7e-54
Identity = 125/177 (70.62%), Postives = 141/177 (79.66%), Query Frame = 0

Query: 1   MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
           MSVS  QAWA+NEAN+LIKKYDRNGDGVLTKEELQSF      STQLNN R VSS  + K
Sbjct: 1   MSVSHLQAWAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVPK 60

Query: 61  TN-NLAHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
           TN NLA  +SS+T + P+KQL DKAQ SS      KQSN  LSREQIK IFK HDS+KDG
Sbjct: 61  TNENLAQKVSSNTCITPKKQLLDKAQGSS------KQSNVPLSREQIKEIFKYHDSNKDG 120

Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
           FL+IR+LTKAF S+GSI PF KA+YAM YAD D+DGL+SE ELDKL+DYA+KIIKKK
Sbjct: 121 FLSIRELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of CcUC08G160140 vs. ExPASy TrEMBL
Match: A0A6J1KM01 (probable calcium-binding protein CML11 OS=Cucurbita maxima OX=3661 GN=LOC111496473 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.1e-53
Identity = 123/177 (69.49%), Postives = 139/177 (78.53%), Query Frame = 0

Query: 1   MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
           MSVS  Q WAENEAN+L+KKYD+NGDG+LTKEELQ F      STQLN   F+S   I K
Sbjct: 1   MSVSILQTWAENEANELMKKYDKNGDGILTKEELQVFLRDVRGSTQLNYQGFLSK--IPK 60

Query: 61  TNNL-AHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
           TN+  AH LSS+TH NP+ Q+QDK   SSTKV   K SN SLSREQIK IFK +DSDKDG
Sbjct: 61  TNDKGAHKLSSNTHTNPKIQVQDKVTKSSTKVLSEKVSNVSLSREQIKKIFKYYDSDKDG 120

Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
           FLNIR++TKAF  LGSI PFYKAQYAMT+ADA+ DGLISE EL+KL+DYA KIIKKK
Sbjct: 121 FLNIREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISETELEKLIDYACKIIKKK 175

BLAST of CcUC08G160140 vs. ExPASy TrEMBL
Match: A0A6J1GIQ8 (probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC111454532 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.5e-52
Identity = 123/177 (69.49%), Postives = 138/177 (77.97%), Query Frame = 0

Query: 1   MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
           MSVS  QAWAENEAN+L+KKYDRNGDGVLTKEELQ F      STQLN+ RF+S   I K
Sbjct: 1   MSVSILQAWAENEANELMKKYDRNGDGVLTKEELQVFLRDVRGSTQLNHQRFLSK--IPK 60

Query: 61  TNNL-AHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
           TN+  AH LSS+ H NP+ Q+Q  A  SSTKV   K SN  LSREQIK IFK +DSDKDG
Sbjct: 61  TNDKGAHQLSSNAHTNPKIQVQGTATKSSTKVLSEKVSNVPLSREQIKKIFKYYDSDKDG 120

Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
           FLN R++TKAF  LGSI PFYKAQYAMT+ADA+ DGLISE EL+KL+DYA KIIKKK
Sbjct: 121 FLNTREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLIDYACKIIKKK 175

BLAST of CcUC08G160140 vs. ExPASy TrEMBL
Match: A0A6J1GII5 (probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC111454483 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.3e-51
Identity = 121/177 (68.36%), Postives = 138/177 (77.97%), Query Frame = 0

Query: 1   MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFH--HRSTQLNNTRFVSSRMISK 60
           MSVS  QAWAEN+AN+LIKKYD+NGDGVLTKEELQ F      STQLNN  F+S   I +
Sbjct: 1   MSVSILQAWAENKANELIKKYDKNGDGVLTKEELQVFLRDVRGSTQLNNQGFLSK--IPR 60

Query: 61  TNNL-AHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDG 120
           TN+  AH L+S+   NP+ Q+Q KA  SSTKV   K SN  LSREQIK IFK +DSDKDG
Sbjct: 61  TNDKGAHKLNSNPRTNPKIQVQSKATKSSTKVLSEKVSNVPLSREQIKKIFKYYDSDKDG 120

Query: 121 FLNIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
           FLNIR++TKAF  LGSI PFYKAQYAMT+ADA+ DGLISE EL+KL+DYA KIIKKK
Sbjct: 121 FLNIREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLIDYAYKIIKKK 175

BLAST of CcUC08G160140 vs. ExPASy TrEMBL
Match: A0A5A7V4R9 (Putative calcium-binding protein CML11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00180 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.9e-51
Identity = 120/175 (68.57%), Postives = 137/175 (78.29%), Query Frame = 0

Query: 1   MSVSQRQAWAENEANQLIKKYDRNGDGVLTKEELQSFFHHRSTQLNNTRFVSSRMISKTN 60
           MSVS  QAWA+ EA++LIKKYDRNGDGVLTKEELQSF H    +L N RFVSS  I KTN
Sbjct: 1   MSVSHLQAWAKIEASELIKKYDRNGDGVLTKEELQSFLH--DARLKNIRFVSSSTIPKTN 60

Query: 61  -NLAHNLSSSTHMNPQKQLQDKAQNSSTKVFDRKQSNASLSREQIKAIFKCHDSDKDGFL 120
            NL   +SS+T + P+KQL DKAQ+S       +QSN  LSREQIK IFK HDS+KDGFL
Sbjct: 61  ENLDQKVSSNTRIKPKKQLLDKAQDS------LRQSNVPLSREQIKEIFKYHDSNKDGFL 120

Query: 121 NIRDLTKAFGSLGSITPFYKAQYAMTYADADQDGLISEVELDKLVDYANKIIKKK 175
           +IR+LTKAFGSLGSI PF KA++AM YAD D+DGLISE EL KL+DYA KIIKKK
Sbjct: 121 SIRELTKAFGSLGSIVPFAKARHAMAYADVDEDGLISEAELHKLIDYAEKIIKKK 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038886759.11.9e-6579.10probable calcium-binding protein CML11 [Benincasa hispida][more]
XP_004152801.17.5e-5470.62probable calcium-binding protein CML11 [Cucumis sativus] >KGN62526.1 hypothetica... [more]
XP_023538396.19.8e-5471.19probable calcium-binding protein CML11 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023002691.16.4e-5369.49probable calcium-binding protein CML11 [Cucurbita maxima][more]
XP_022951798.13.2e-5269.49probable calcium-binding protein CML11 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LRC83.7e-5470.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359950 PE=4 SV=1[more]
A0A6J1KM013.1e-5369.49probable calcium-binding protein CML11 OS=Cucurbita maxima OX=3661 GN=LOC1114964... [more]
A0A6J1GIQ81.5e-5269.49probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
A0A6J1GII51.3e-5168.36probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
A0A5A7V4R94.9e-5168.57Putative calcium-binding protein CML11 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 103..131
e-value: 1.1
score: 17.5
coord: 13..41
e-value: 0.0025
score: 27.0
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 19..127
e-value: 1.5E-9
score: 38.2
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 99..134
score: 11.974924
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 9..44
score: 12.42125
NoneNo IPR availableGENE3D1.10.238.10coord: 8..43
e-value: 2.7E-6
score: 28.9
NoneNo IPR availableGENE3D1.10.238.10coord: 44..164
e-value: 1.4E-12
score: 49.6
NoneNo IPR availablePANTHERPTHR10891:SF911SUBFAMILY NOT NAMEDcoord: 90..169
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 90..169
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 148..160
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 22..34
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 112..124
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 11..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G160140.1CcUC08G160140.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding