CcUC08G158840 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G158840
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 27022681 .. 27027396 (-)
RNA-Seq ExpressionCcUC08G158840
SyntenyCcUC08G158840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATGGTAAATAACAATCCAGAAGAAATGCATTTACAGGCTAATGATATATTACAAACAACTATCCAATTATGATTCAAGAACGGCACCTTTGGTAATTTTCCATCCAGAACTGAGGTATGACAGCTCGTATCTCGTCGTATAGGTTTTTCTGTTCGAATCATTGTGTTCTGGATGTTTTACATCAATGAGACGGGCTGATTCTTCAAGAGTTGCTTCCACCATGGCACGCCGACCATCTAACGACACTGTTACACTGTCAATGGTCAGATTTGAGAGAGTGTAGTCATAGAACCAACCGAGTTCTGAGATTTCGACTGCACGATCCGTCCAGATCTTCAACATCTCACCATCTAAAATCTGAAAAAGATATTAGAATCTTATTATGTTTGCTTCAAGTGAAAACATATAGTGGGAGAAACAATGCATTCAGTCTAAAACAAGATGAGTTGATCAAGTTTGATATCATTGGAAAGATGATATGATGCTACATAGTGCACATAATTGTGAGACATTACTCTGAAATTTAATCAAGTCTATCATGAAAGGAGGACAGTGAATTACCTTTACCCTAAAATGAATAACTATGATTATCTTCCTGACATACAGTTTCAACATCCATTGTAATCACCGCCAAAAAAGATAAATAAGTGTTTTATCCTTGATATTTCATAATGAACCTCTTGATGAAAAACTTGATAATGACAACAAAACCTCCAACTATCTCTACAATGATATGATATTGTCCACTTTAAGAATAAACCCTCATAGTTTTGCTTTTTGGAACCACTCAAGATGTCATACCAATAGAGATAATTGTCTTCACTTATATACCATTGATCTTTACCTTCCCCAATCAATGCGGAACTTTGTTTCCACTTTGCACCTAACAAAACTACCAAGACATTTGATTGCATATAAAATGCTAATGAAGCACATTTTCAGAAAATGGTAATTTCTTAGGAGAAATCACCATTAGAAAGGGAAAAAGAGGTGGGTGTTTTTTCCTTGATATTGCATGTAATGGAACTTTTTGTTCCTTCAACAAGAAACACATTTAAGGTTTCCTCTCTATTTCTGCTTCGTCTAAGGGGTTGTAGGTTCGCTACTCCTTACTGTGATGTAATAATCTTAAAAAACAAACAGTTTTATTTGCTTCAGTAACAAAGTACAACAAATTGAACACTAAAAAAGGTACCTATGACCTGATATAACACCCATTGTAGATACACCCTTAGTTCTCTTATTTAGTCATTCCATGATGAACTTTTTGCTGACAAAGTTGAAAAGAAGTCTGATTAATAATTTAGTTTCTGTGAATTTAATTACTTCTATAGCAAATTGATCGTGAACTCGCATTTGGAAAGATAAAACAACCCAGCAAAAGAATTGAGATGTTTGCAAACGAGGATCATTCTCTTAGAATTGCAACGATGTTAACAAGACAATCTTGTACTTTAACGATCAAACTAGAAAAGGTTTTAGTCCTATTTTACTTTTTATTTGTGGGAAGGGGAGGGGGAGAGGCCATTGTGAAAATTCTTTTGCAGCTCGAAATGAAAAAGAAACAGGATAATTTAATATATCCTTACCTCTGATAGTTTTGCAAGGCAATGTTCGGGTCCAAAAGCCAGAGACTTAATGCTCTGCCATTTCCGAACTAGACCTTCTGCAATTCGTGCATCCATCCTGGTTGGTTCCTCACTGGACTTTTCAACTTCGGATGCTGCACAAATAAAAATCAGATTATGAAACTTGACCAGGTTTCCTCCCATGAAGTTGACACAGGAGAGAAGTTCGTAAATCATTGGACAAGTTGGCTATTGGAGACTGATATCAGATTGGGTATCACCGAGTGAAAAACAATAAAATGATAGAAGAATAAGTAACAAAATCCACTAAAACGCCTTACGAATCCACCTAGACCTTAGAGTTGTGTCACAAGCCTTTAAGAAAATCTCTCTAATCGAACTTATATTACACTTTCAAACTGCCGGAATTATGACGGCACTGCATCTAAAAAACTACATAAACATCAGTTAACCAGTACATGATTTTTCGAGAGTATAAAACCATTTTCAACTAAAGATTTGAACATTTACACTATTATAGGACAAGTATCTAGAAATTCTAAAAATAGGAAGCTGAATTTTTTTTTTTTTTTTTTTAAAAAATAATAATAATTAGAACATACCCACACTCGTAGTGGATGCCATTGAGGAACCACCTTCTTTAAGTAGAGCAGTAGCGTTATTTCTAGCAGGTAAAAATCTCAAACCAGCCAAAGTCAACAACCCAACTGCCAAACCAGCACACATGATCTTCACACTTGCATCTTTAATTTGATCAGTAATTGGTTTTTCATCATTTATTTCACCAGCTTTAGCTCTCTCAGAAACCTCAGAAAAGTTAGTACGTTCATTCTCATCAAAGTTCACTAAAGGCATCGGACTATTTACAGCAGGAAAAACATATTCCATTTCCGCTTCTGCCTCACGCCTATAACTGTTCTGAGTGAGGGGAAACACCTTCCGCAGTGCCTGAATTGCACTGGACTTCACATGATCTAAAACGGCAGTAGCCTCAGCACCAATCTTCACTATAGCTGCTGCTGCAGCTAGGGGTGATCCGTTAACTCCTTCCAGTTTCTCTAAGTACCTCAGAACAGTAGGATCATCATAGTAATCTCCAAGTTTAAAATAAATATTTTTAGTGTCTCTAAATCTGGAGAACACTACTTCTGCCAACCATGTCTCCAACAGCTTACATAGCCCCGGAAGGTCATTTTCATCTTCACCCTTTGAATTTTCGAGGATAAAATCTACAATAGCTGGATTTCTGTAAGGTGAATTCTCACTGTCTAAGCCCAACCATGATCGACACTCGTCAAGTTCTCCACCAAGTAGGGAACATAGCCCCCTCTCAAGAGCAAAATCAACCTCGCGAGGTGCATATGCTGCGACAGCAGTCCCAACAACAGCTTCCTTAGTTTGCTGAAGTTGTTGGAAGAGGTTGTCAGCATCTTGGATAAGGTGTGGTTTTTTGCCAACAAAGGCCTGTGCCACGAGTGCAAGTGCCACTCCATAAACTTCAAAACTTTCTGCAGGAATATTTGTTGGTGTGGCTACAAAGAGATCAACCTTTCAAAAAGACAAAGGGAGGCTTAATGTCACAAGCAGAAAAGGCAAAAGTGGGGATAGTAATTTAGGAAGATTTCAATTCTGCAAGAACCTGCTCAGATGCTGTCATTCGTTCAAATGCCTCATTCATAAAATCTTCACGGGTGAATCCGCCAGCAATAGCTGTTGCTCCCCCTCCTCCAACAGCCCACAGAATATTCCGCACTCCATGGAGACCCTCTTCTCTTCTTGTTCGCCACTCGTCACCAAGAGGCAAAGCTAAAAGTTCCAGAACACATCGAGGTGTGATCTCTTCCAATGTCTCATCAATTTGTGCAAGCAAATCTGGTGCAAGGCTACTGGCACCCTCCTCCTACATTCCCAAAGGTAAGTGTTCTTCAAGCAGTATAATATAACTAGATTTCAAGCATGACTTTATGAAAGCAAATTGATGTAGTCTTGATTTTTTGTGTTTTTCTCATCACTACTCAGTACGTAACATTTGGGATCAACAATCATCGTTATTAAGGTTAACCAAATTCACAATTTAATTCACTCTCCAAGAGTGAACGTCATCCAGAACTATTGAATGCTAATTTATGCCAGAAAAAGTAAAGATAGCTTAAAAGGCCCTCTTGAAAATGGTAACGAGCAGATTGAAGAGTTGCAATCAAATATTTACCTGCAACAACTTCAAGGCCTTCTCGAGCACTTCGCAACCCTGAATAAAATCAGGTGGAGATAATGCCATAGCATCCCTTGATATGTCAACATAAGCAAGAGCCAGGGCCAGGACAATATCTTGCTTGAATGATTTTGGCAACCTATCTCTGAGCAAGCTCTCTCCAATTTCAAGAACCAATGCTGTCTCTCCAGCTTCTTGCAACACACACAAAGCACCAGGAACCTACAGATTAACAATTCCAACCTAAAACATTTGCTCAGTTGCAATTATAACAGCAAACAGCACTGATCCGGATAAAACATAGGCACAAAAGAAATTTGCTGCCTCACATTTGCGGCCTCACATATTAAACTATAACAATTGACATTCGCTAGATTATTAAGAGCACAATTTAACTGAACTAACCACAACCGAGTTTCACAATTGATTATAACATCGCAAAAATCGAAATAAACATCACCTTATCGAAAGGGACTTGCGTGAGAATGGTACCATCTTCATCATCCGAAAGGCTTTGATTGTACTCTCTCCGCGAAGTATGGTCCGCCAAGGTTTCGCAAGCTGCCTGAAGAATCTGCCGGCGACTTATCAGAGTCTCCTGGCTAAACCCATACTGCGGCGGCTTCGAAACTCTAGCTTCGTAAGCTCTCCGAATCCCATCCCCAAGAAAATGCGTCTCGGCGCCAAGAACTCGGTAGAAATCGATGGGAATTGTAACTTGGCGCTCAGGGGAGGCAATTGGGGGAGAGAAAGAAGGGGAGAGAGTAACAGCGGAGGAGGAGAAAGAATGGGAGTGGTCAAAGGAGGAATCGGAGAGGAATTGGAAATCTCCGAGAAGTCGCTCGGCCCATTTGCTAGCGGCACACTTCACAGAGGCGTTACCCCCACCGGAGTGGTTGAGCCGTCGTGA

mRNA sequence

ATGCTATGGTTCGCTACTCCTTACTGTGATCAAATTGATCGTGAACTCGCATTTGGAAAGATAAAACAACCCAGCAAAAGAATTGAGATGTTTGCAAACGAGGATCATTCTCTTAGAATTGCAACGATGTTAACAAGACAATCTTGTACTTTAACGATCAAACTAGAAAAGAACATACCCACACTCGTAGTGGATGCCATTGAGGAACCACCTTCTTTAAGTAGAGCAGTAGCGTTATTTCTAGCAGTGTCTCTAAATCTGGAGAACACTACTTCTGCCAACCATGTCTCCAACAGCTTACATAGCCCCGGAAGAACCTGCTCAGATGCTGTCATTCGTTCAAATGCCTCATTCATAAAATCTTCACGGGTGAATCCGCCAGCAATAGCTGTTGCTCCCCCTCCTCCAACAGCCCACAGAATATTCCGCACTCCATGGAGACCCTCTTCTCTTCTTGTTCGCCACTCGTCACCAAGAGGCAAAGCTAAAAGTTCCAGAACACATCGAGGTGTGATCTCTTCCAATGTCTCATCAATTTGTGCAAGCAAATCTGGTGCAAGGCTACTGGCACCCTCCTCCTACATTCCCAAAGTACGTAACATTTGGGATCAACAATCATCGTTATTAAGGGACTTGCGTGAGAATGGTACCATCTTCATCATCCGAAAGGCTTTGATTGTACTCTCTCCGCGAAGTATGGTCCGCCAAGGTTTCGCAAGCTGCCTGAAGAATCTGCCGGCGACTTATCAGAGTCTCCTGGCTAAACCCATACTGCGGCGGCTTCGAAACTCTAGCTTCGTAAGCTCTCCGAATCCCATCCCCAAGAAAATGCGTCTCGGCGCCAAGAACTCGGTAGAAATCGATGGGAATTGTAACTTGGCGCTCAGGGGAGGCAATTGGGGGAGAGAAAGAAGGGGAGAGAGTAACAGCGGAGGAGGAGAAAGAATGGGAGTGGTCAAAGGAGGAATCGGAGAGGAATTGGAAATCTCCGAGAAGTCGCTCGGCCCATTTGCTAGCGGCACACTTCACAGAGGCGTTACCCCCACCGGAGTGGTTGAGCCGTCGTGA

Coding sequence (CDS)

ATGCTATGGTTCGCTACTCCTTACTGTGATCAAATTGATCGTGAACTCGCATTTGGAAAGATAAAACAACCCAGCAAAAGAATTGAGATGTTTGCAAACGAGGATCATTCTCTTAGAATTGCAACGATGTTAACAAGACAATCTTGTACTTTAACGATCAAACTAGAAAAGAACATACCCACACTCGTAGTGGATGCCATTGAGGAACCACCTTCTTTAAGTAGAGCAGTAGCGTTATTTCTAGCAGTGTCTCTAAATCTGGAGAACACTACTTCTGCCAACCATGTCTCCAACAGCTTACATAGCCCCGGAAGAACCTGCTCAGATGCTGTCATTCGTTCAAATGCCTCATTCATAAAATCTTCACGGGTGAATCCGCCAGCAATAGCTGTTGCTCCCCCTCCTCCAACAGCCCACAGAATATTCCGCACTCCATGGAGACCCTCTTCTCTTCTTGTTCGCCACTCGTCACCAAGAGGCAAAGCTAAAAGTTCCAGAACACATCGAGGTGTGATCTCTTCCAATGTCTCATCAATTTGTGCAAGCAAATCTGGTGCAAGGCTACTGGCACCCTCCTCCTACATTCCCAAAGTACGTAACATTTGGGATCAACAATCATCGTTATTAAGGGACTTGCGTGAGAATGGTACCATCTTCATCATCCGAAAGGCTTTGATTGTACTCTCTCCGCGAAGTATGGTCCGCCAAGGTTTCGCAAGCTGCCTGAAGAATCTGCCGGCGACTTATCAGAGTCTCCTGGCTAAACCCATACTGCGGCGGCTTCGAAACTCTAGCTTCGTAAGCTCTCCGAATCCCATCCCCAAGAAAATGCGTCTCGGCGCCAAGAACTCGGTAGAAATCGATGGGAATTGTAACTTGGCGCTCAGGGGAGGCAATTGGGGGAGAGAAAGAAGGGGAGAGAGTAACAGCGGAGGAGGAGAAAGAATGGGAGTGGTCAAAGGAGGAATCGGAGAGGAATTGGAAATCTCCGAGAAGTCGCTCGGCCCATTTGCTAGCGGCACACTTCACAGAGGCGTTACCCCCACCGGAGTGGTTGAGCCGTCGTGA

Protein sequence

MLWFATPYCDQIDRELAFGKIKQPSKRIEMFANEDHSLRIATMLTRQSCTLTIKLEKNIPTLVVDAIEEPPSLSRAVALFLAVSLNLENTTSANHVSNSLHSPGRTCSDAVIRSNASFIKSSRVNPPAIAVAPPPPTAHRIFRTPWRPSSLLVRHSSPRGKAKSSRTHRGVISSNVSSICASKSGARLLAPSSYIPKVRNIWDQQSSLLRDLRENGTIFIIRKALIVLSPRSMVRQGFASCLKNLPATYQSLLAKPILRRLRNSSFVSSPNPIPKKMRLGAKNSVEIDGNCNLALRGGNWGRERRGESNSGGGERMGVVKGGIGEELEISEKSLGPFASGTLHRGVTPTGVVEPS
Homology
[Close]
BLAST of CcUC08G158840 vs. ExPASy TrEMBL
Match: A0A0A9DPZ4 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-15
Identity = 54/87 (62.07%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 107 CSDAVIRSNASFIKSSRVNPPAIAVAPPPPTAHRIFRTPWRPSSLLVRHSSPRGKAKSSR 166
           CS  VIR  ASF+K SR NPP     PP PT H +F  P RPS  L    S  G+A+SS 
Sbjct: 12  CSADVIRKKASFMKDSRENPPPTVAIPPLPTLHNMFLAPCRPSWRLFLCFSSIGRARSSN 71

Query: 167 THRGVISSNVSSICASKSGARLLAPSS 194
           T RGVISS VSSICAS SGARLLAPSS
Sbjct: 72  TQRGVISSKVSSICASSSGARLLAPSS 98

The following BLAST results are available for this feature:
BLAST of CcUC08G158840 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G158840 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G158840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9DPZ43.1e-1562.07Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of CcUC08G158840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G158840.1CcUC08G158840.1mRNA