CcUC08G158190 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G158190
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTranscription initiation factor TFIID subunit 10
LocationCicolChr08: 26437984 .. 26439668 (+)
RNA-Seq ExpressionCcUC08G158190
SyntenyCcUC08G158190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATCGCGGAGTAATTCAAACGAGCTTGATTTAGAAGAGAGGGAAAACGAAGAAGAAGATGAACATTAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCTCTCTCCGAGTTTCTAGCATCTTTAATGGAGTATACTCCCACTGTAAGATCTCATTTCCATGCTTCTTAACGCCAATCCGATTCTTTTCCTCCACGCGTTTTCCTGCAACTTCAAATCACGTCGGCGCTCTTTTCTCTTTTGGGCTATCGTTTTACAGATTCCCGATGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGTAGGTACCTTTTCGTTTGTTTTTATATTTTCGTTTCATCAAAACCCTAGGTCTAAAACGCGGTCTTTCGACCGACAGATGACATGGATATATCTTTTTCCTAATCTTCTGATTGGTGTTGCTTTCTTTTCACAAATTAATTGTACTTGGAGAATTTTTCATTCAATTGGTTGGTTCTTGGCTGTTGATATCGATCAAAGTGAAGCTTAATTAGGCCGTGGGTTTCGATTAGGGGATTTATTATTTTGAGTATTTTTTGTTCTAAAGAGACAATGTTCTTCGTTGCTGCTGATTTTTTTGTTGGGAAGTTGCCTGTATATTGCTCAATATCTATAAATGAACTAAGGATAACAGAGTTTGTTGCTGTTATTGAATTTCACCAAGGTGAGCCTATTCATTAAGAAGCTTTAAATTAAATGATTCTGAGAAGTTATGATAATGAATGAAGCTGATGGCCTTCATAACGTGCATTATAGCGGTCATGGTCTTGGTGCAGATTACCCCGCCTCCCCCTGTAAAGAACTGCTATTATAAGAGAATGAATTAAGATATTAACCTCCTATCTTCGACAAAAAGAACAGTTTTCTTCGCGGATTTCTTATTGCATAGCAATGTCAGTCGGGATTCATAGAACCAAAGGAGTAGAAGCATTCGGAAACATCCTAACCACCTGGGCCACAGGTCGATCGGATTTTTTTTTTTTAATCACAGTTCTCAGCTCATTCCCTTTAAAGAAATGGGGGATCTTCTCTCTGGTATCGGGGTTCCTAGTGGTCTAATTTTTGGTCTATACTTCGTATGTCAGACGCAATATATTCTTGCTCGGTTTGTTCTGTAATAGTGTTATAAGACGTGAAGATGGGTCTTTCAGTGTTCATGGTGGTATTCTTGGTGGGGATCATTGATGCGGACTATTGATTTCAATGAGTGTGCCTTTCTATACTGAGAATGGTGCACTGGGGAAGTGTCGAGAAGTTAATCTAATTCAGAGTACTCCGTACTTAGCCATCTTTGTAATTCAGCTGTGATGATTTCTTCAAAGTTATGAAATTTCTTGATTATTATGAGATGGATTTCTTAACCTTGGCCTGGTTAATTGCTTTCTAGTTAAAGTGATACTCAGTTTTGATTAGCTTTAAATTCGTTCACCATCATGTGTGATGTTTGTAATGTGTGATGTTTGTAATTAGAGATTAGCTTTCTATTTGTTGTGAAGGCTAGTTTACATTGTTTCTTACGAAGCTTCTCTTTTGTAGGATCAGGCTTGTCGCTGTTGCCACACAGAAGTTTGTAGCAGATGTTGCAAGTGATGCTCTCCAGTATGCTTTCTTTCTTCTCTCTCATTTTGCCTGA

mRNA sequence

AAAATCGCGGAGTAATTCAAACGAGCTTGATTTAGAAGAGAGGGAAAACGAAGAAGAAGATGAACATTAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCTCTCTCCGAGTTTCTAGCATCTTTAATGGAGTATACTCCCACTATTCCCGATGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTCGCTGTTGCCACACAGAAGTTTGTAGCAGATGTTGCAAGTGATGCTCTCCAGTATGCTTTCTTTCTTCTCTCTCATTTTGCCTGA

Coding sequence (CDS)

ATGAACATTAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCTCTCTCCGAGTTTCTAGCATCTTTAATGGAGTATACTCCCACTATTCCCGATGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTCGCTGTTGCCACACAGAAGTTTGTAGCAGATGTTGCAAGTGATGCTCTCCAGTATGCTTTCTTTCTTCTCTCTCATTTTGCCTGA

Protein sequence

MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQYAFFLLSHFA
Homology
[Close]
BLAST of CcUC08G158190 vs. NCBI nr
Match: XP_008445294.1 (PREDICTED: transcription initiation factor TFIID subunit 10 isoform X2 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
          MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61 TQKFVADVASDALQY 76
          TQKFVADVASDALQ+
Sbjct: 61 TQKFVADVASDALQH 75

[Close]
BLAST of CcUC08G158190 vs. NCBI nr
Match: XP_008445293.1 (PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
          MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61 TQKFVADVASDALQY 76
          TQKFVADVASDALQ+
Sbjct: 61 TQKFVADVASDALQH 75

[Close]
BLAST of CcUC08G158190 vs. NCBI nr
Match: KAG6598532.1 (Transcription initiation factor TFIID subunit 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1   MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 292 MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 351

Query: 61  TQKFVADVASDALQY 76
           TQKFVADVASDALQ+
Sbjct: 352 TQKFVADVASDALQH 366

[Close]
BLAST of CcUC08G158190 vs. NCBI nr
Match: XP_038886703.1 (transcription initiation factor TFIID subunit 10 isoform X1 [Benincasa hispida])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
          MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 20 MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79

Query: 61 TQKFVADVASDALQY 76
          TQKFVADVASDALQ+
Sbjct: 80 TQKFVADVASDALQH 94

[Close]
BLAST of CcUC08G158190 vs. NCBI nr
Match: XP_022962589.1 (transcription initiation factor TFIID subunit 10 [Cucurbita moschata] >XP_022997339.1 transcription initiation factor TFIID subunit 10 [Cucurbita maxima] >XP_023547186.1 transcription initiation factor TFIID subunit 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
          MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61 TQKFVADVASDALQY 76
          TQKFVADVASDALQ+
Sbjct: 61 TQKFVADVASDALQH 75

[Close]
BLAST of CcUC08G158190 vs. ExPASy Swiss-Prot
Match: O04173 (Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana OX=3702 GN=TAF10 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.2e-29
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 0 

Query: 1  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
          MN  QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1  MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61 TQKFVADVASDALQY 76
          TQKFVADVASDALQ+
Sbjct: 61 TQKFVADVASDALQH 75

[Close]
BLAST of CcUC08G158190 vs. ExPASy Swiss-Prot
Match: Q12962 (Transcription initiation factor TFIID subunit 10 OS=Homo sapiens OX=9606 GN=TAF10 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-12
Identity = 30/58 (51.72%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 18  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY 76
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQ+
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQH 173

[Close]
BLAST of CcUC08G158190 vs. ExPASy Swiss-Prot
Match: Q8K0H5 (Transcription initiation factor TFIID subunit 10 OS=Mus musculus OX=10090 GN=Taf10 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-12
Identity = 30/58 (51.72%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 18  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY 76
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQ+
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQH 173

[Close]
BLAST of CcUC08G158190 vs. ExPASy Swiss-Prot
Match: O60171 (Transcription initiation factor TFIID subunit 10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=taf10 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-11
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 15  DAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQ 74
           D  L  FLA + +Y+P IPD L+++YL  SGF+C D RL +L+ +  QKF++DVA DA Q
Sbjct: 90  DKTLENFLAQMDDYSPLIPDVLLDYYLSLSGFKCVDPRLKKLLGLTAQKFISDVAQDAYQ 149

Query: 75  YA 77
           Y+
Sbjct: 150 YS 151

[Close]
BLAST of CcUC08G158190 vs. ExPASy Swiss-Prot
Match: Q9XZT7 (Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster OX=7227 GN=Taf10b PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-11
Identity = 28/59 (47.46%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 18 LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQYA 77
          LS+F++ L +YTP IPD +  HYL   GFQ  D R++RL+++A QK+++D+  DALQ++
Sbjct: 41 LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVRLISLAAQKYMSDIIDDALQHS 99

[Close]
BLAST of CcUC08G158190 vs. ExPASy TrEMBL
Match: A0A6J1KB50 (Transcription initiation factor TFIID subunit 10 OS=Cucurbita maxima OX=3661 GN=LOC111492283 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.5e-32
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
          MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61 TQKFVADVASDALQY 76
          TQKFVADVASDALQ+
Sbjct: 61 TQKFVADVASDALQH 75

[Close]
BLAST of CcUC08G158190 vs. ExPASy TrEMBL
Match: A0A6J1HHI7 (Transcription initiation factor TFIID subunit 10 OS=Cucurbita moschata OX=3662 GN=LOC111462992 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.5e-32
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
          MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61 TQKFVADVASDALQY 76
          TQKFVADVASDALQ+
Sbjct: 61 TQKFVADVASDALQH 75

[Close]
BLAST of CcUC08G158190 vs. ExPASy TrEMBL
Match: A0A1S3BD75 (Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC103488368 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.5e-32
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
          MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61 TQKFVADVASDALQY 76
          TQKFVADVASDALQ+
Sbjct: 61 TQKFVADVASDALQH 75

[Close]
BLAST of CcUC08G158190 vs. ExPASy TrEMBL
Match: A0A1S3BBV7 (Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC103488368 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.5e-32
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
          MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61 TQKFVADVASDALQY 76
          TQKFVADVASDALQ+
Sbjct: 61 TQKFVADVASDALQH 75

[Close]
BLAST of CcUC08G158190 vs. ExPASy TrEMBL
Match: A0A0A0LPV6 (Transcription initiation factor TFIID subunit 10 OS=Cucumis sativus OX=3659 GN=Csa_2G383360 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
          MN +QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1  MNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61 TQKFVADVASDALQY 76
          TQKFVADVASDALQ+
Sbjct: 61 TQKFVADVASDALQH 75

[Close]
BLAST of CcUC08G158190 vs. TAIR 10
Match: AT4G31720.2 (TBP-associated factor II 15 )

HSP 1 Score: 128.3 bits (321), Expect = 3.0e-30
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 0 

Query: 1  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
          MN  QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1  MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61 TQKFVADVASDALQY 76
          TQKFVADVASDALQ+
Sbjct: 61 TQKFVADVASDALQH 75

[Close]
BLAST of CcUC08G158190 vs. TAIR 10
Match: AT4G31720.1 (TBP-associated factor II 15 )

HSP 1 Score: 128.3 bits (321), Expect = 3.0e-30
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 0 

Query: 1  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
          MN  QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1  MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61 TQKFVADVASDALQY 76
          TQKFVADVASDALQ+
Sbjct: 61 TQKFVADVASDALQH 75

The following BLAST results are available for this feature:
BLAST of CcUC08G158190 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008445294.11.1e-3197.33PREDICTED: transcription initiation factor TFIID subunit 10 isoform X2 [Cucumis ... [more]
XP_008445293.11.1e-3197.33PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis ... [more]
KAG6598532.11.1e-3197.33Transcription initiation factor TFIID subunit 10, partial [Cucurbita argyrosperm... [more]
XP_038886703.11.1e-3197.33transcription initiation factor TFIID subunit 10 isoform X1 [Benincasa hispida][more]
XP_022962589.11.1e-3197.33transcription initiation factor TFIID subunit 10 [Cucurbita moschata] >XP_022997... [more]
BLAST of CcUC08G158190 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O041734.2e-2982.67Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana OX=3702... [more]
Q129623.6e-1251.72Transcription initiation factor TFIID subunit 10 OS=Homo sapiens OX=9606 GN=TAF1... [more]
Q8K0H53.6e-1251.72Transcription initiation factor TFIID subunit 10 OS=Mus musculus OX=10090 GN=Taf... [more]
O601711.4e-1150.00Transcription initiation factor TFIID subunit 10 OS=Schizosaccharomyces pombe (s... [more]
Q9XZT71.8e-1147.46Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster OX=... [more]
BLAST of CcUC08G158190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KB505.5e-3297.33Transcription initiation factor TFIID subunit 10 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1HHI75.5e-3297.33Transcription initiation factor TFIID subunit 10 OS=Cucurbita moschata OX=3662 G... [more]
A0A1S3BD755.5e-3297.33Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A1S3BBV75.5e-3297.33Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A0A0LPV61.2e-3196.00Transcription initiation factor TFIID subunit 10 OS=Cucumis sativus OX=3659 GN=C... [more]
BLAST of CcUC08G158190 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G31720.23.0e-3082.67TBP-associated factor II 15 [more]
AT4G31720.13.0e-3082.67TBP-associated factor II 15 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPRINTSPR01443TFIID30KDSUBcoord: 50..72
score: 64.35
coord: 30..46
score: 60.0
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPFAMPF03540TFIID_30kDacoord: 30..76
e-value: 2.0E-23
score: 82.1
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPANTHERPTHR21242TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10coord: 6..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G158190.1CcUC08G158190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016573 histone acetylation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006352 DNA-templated transcription, initiation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000124 SAGA complex
cellular_component GO:0005669 transcription factor TFIID complex
cellular_component GO:0005634 nucleus
molecular_function GO:1990841 promoter-specific chromatin binding
molecular_function GO:0016251 RNA polymerase II general transcription initiation factor activity