CcUC08G157970 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G157970
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Eukaryotic translation initiation factor 5A
Location	CicolChr08: 26279647 .. 26280262 (+)
RNA-Seq Expression	CcUC08G157970
Synteny	CcUC08G157970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTTGGTTTAAATACTACTTTGGTTTCTAATCTAACTGAAGTAGTTTGATCTTTACTCTAATCCAGGATCTGCATTTAGGTTTAAAATCGAATAGTTAACACTAAAACATAAATTTAAGAATTGAAGGGATGTGAACAAAATAATTGAAGCTTTACTCTAGTCACATCCTGGATGGTGTCTGCTTTCTCCACTGTATTCTGCGAGTCTGAAGCTTTAGTATTGTAGTTTACGACATTGTGTTGGATTTACTTCGATGCGATGATTGGCCTTACTGAAATTTGGTTTGTTGTTAGGTGAGCCTCTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGCTTCCTACTGATGAAAGTTTACTTGCTCAGAAGGCTCTGCACATATTGATTCTCCTAAATTCACAACACACACATATTGCTTGTTTTCTTGTCCATCGTATTATCATTGAGCACTAACTAGCTTTCACACGCTTCATGCCTCGGTTCCAGATTAAAGATGGATTTGCAGAAGGGAAGGACCTTGTTGTGAGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAACTAACTTCCCCACCCCAC

mRNA sequence

ATGACGTTGGTGAGCCTCTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGCTTCCTACTGATGAAAGTTTACTTGCTCAGAAGGCTCTGCACATATTGATTCTCCTAAATTCACAACACACACATATTGCTTGTTTTCTTGTCCATCCTTTCACACGCTTCATGCCTCGGTTCCAGATTAAAGATGGATTTGCAGAAGGGAAGGACCTTGTTGTGAGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAACTAACTTCCCCACCCCAC

Coding sequence (CDS)

ATGACGTTGGTGAGCCTCTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGCTTCCTACTGATGAAAGTTTACTTGCTCAGAAGGCTCTGCACATATTGATTCTCCTAAATTCACAACACACACATATTGCTTGTTTTCTTGTCCATCCTTTCACACGCTTCATGCCTCGGTTCCAGATTAAAGATGGATTTGCAGAAGGGAAGGACCTTGTTGTGAGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAACTAACTTCCCCACCCCAC

Protein sequence

MTLVSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKDGFAEGKDLVVSECHVSHGRGTNLWLEGYWPKELTSPPH

Homology

[Close]

BLAST of CcUC08G157970 vs. NCBI nr
Match: PPS09895.1 (hypothetical protein GOBAR_AA10755 [Gossypium barbadense])

HSP 1 Score: 64.7 bits (156), Expect = 5.2e-07
Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILI--------------LLNSQHTHIACFLV 63
           VSLLT++G TKDDLRLPTDE+LL Q  L + +              +L+    H  C + 
Sbjct: 102 VSLLTESGDTKDDLRLPTDENLLKQGRLKLSVGELCIYIQLPLRFYILDFVSLHPLCGIA 161

Query: 64  HPFTRFMPRFQIKDGFAEGKDLVVS 75
                 + R QIKDGFAEGKDLVVS
Sbjct: 162 --VVNIIVRLQIKDGFAEGKDLVVS 184

[Close]

BLAST of CcUC08G157970 vs. NCBI nr
Match: XP_008445267.1 (PREDICTED: eukaryotic translation initiation factor 5A-4-like [Cucumis melo] >XP_038884938.1 eukaryotic translation initiation factor 5A-4-like [Benincasa hispida])

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-06
Identity = 39/71 (54.93%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VSLLTDNGSTKDDLRLPTDESLLA                                QIKD
Sbjct: 102 VSLLTDNGSTKDDLRLPTDESLLA--------------------------------QIKD 140

Query: 64  GFAEGKDLVVS 75
           GFAEGKDLVVS
Sbjct: 162 GFAEGKDLVVS 140

[Close]

BLAST of CcUC08G157970 vs. NCBI nr
Match: PHT89094.1 (Eukaryotic translation initiation factor 5A-1 [Capsicum annuum])

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-06
Identity = 38/94 (40.43%), Postives = 46/94 (48.94%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VS LT NG+TKD+LRLPTD++LLA                                Q+KD
Sbjct: 42  VSCLTKNGNTKDELRLPTDDTLLA--------------------------------QVKD 100

Query: 64  GFA-EGKDLVVSECHVSHGRGTNLWLEGYWPKEL 97
           GFA EG   V   C V HG G +LW +GYW + L
Sbjct: 102 GFAEEGPGFV---CDVRHGGGADLWYQGYWSQNL 100

[Close]

BLAST of CcUC08G157970 vs. NCBI nr
Match: XP_027368102.1 (eukaryotic translation initiation factor 5A-2 isoform X1 [Abrus precatorius])

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-06
Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VSLLT+NG+TKDDLRLPTD+SLL Q   ++          I C L            IKD
Sbjct: 102 VSLLTENGNTKDDLRLPTDDSLLTQVCTNL----------IFCIL------------IKD 150

Query: 64  GFAEGKDLVVS 75
           GFAEGKDLVVS
Sbjct: 162 GFAEGKDLVVS 150

[Close]

BLAST of CcUC08G157970 vs. NCBI nr
Match: KAG2407760.1 (Eukaryotic translation initiation factor [Vigna angularis])

HSP 1 Score: 61.2 bits (147), Expect = 5.8e-06
Identity = 37/71 (52.11%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VSLLT+NG+TKDDLRLPTD+SLL Q   ++ I                       F IKD
Sbjct: 102 VSLLTENGNTKDDLRLPTDDSLLTQVGSNLEIF---------------------PFLIKD 151

Query: 64  GFAEGKDLVVS 75
           GFAEGKDLVVS
Sbjct: 162 GFAEGKDLVVS 151

[Close]

BLAST of CcUC08G157970 vs. ExPASy Swiss-Prot
Match: P56336 (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.8e-08
Identity = 36/71 (50.70%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VSLLTDNG+TKDDLRLPTD+SLL+                                QIKD
Sbjct: 102 VSLLTDNGNTKDDLRLPTDDSLLS--------------------------------QIKD 140

Query: 64  GFAEGKDLVVS 75
           GFAEGKDLVVS
Sbjct: 162 GFAEGKDLVVS 140

[Close]

BLAST of CcUC08G157970 vs. ExPASy Swiss-Prot
Match: Q945F4 (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 35/71 (49.30%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VSLLTDNGSTKDDL+LPTD+SLL                                 QIKD
Sbjct: 102 VSLLTDNGSTKDDLKLPTDDSLLT--------------------------------QIKD 140

Query: 64  GFAEGKDLVVS 75
           GFA+GKDLVVS
Sbjct: 162 GFADGKDLVVS 140

[Close]

BLAST of CcUC08G157970 vs. ExPASy Swiss-Prot
Match: Q9AXQ4 (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-07
Identity = 35/71 (49.30%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VSLLTDNG+TKDDLRLPTDE+LL+                                 IKD
Sbjct: 102 VSLLTDNGNTKDDLRLPTDENLLS--------------------------------LIKD 140

Query: 64  GFAEGKDLVVS 75
           GFAEGKDLVVS
Sbjct: 162 GFAEGKDLVVS 140

[Close]

BLAST of CcUC08G157970 vs. ExPASy Swiss-Prot
Match: P26564 (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-07
Identity = 34/71 (47.89%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VSLLT+NG+TKDDL+LPTD+SLL                                 QIKD
Sbjct: 103 VSLLTENGNTKDDLKLPTDDSLLT--------------------------------QIKD 141

Query: 64  GFAEGKDLVVS 75
           GFAEGKDLVVS
Sbjct: 163 GFAEGKDLVVS 141

[Close]

BLAST of CcUC08G157970 vs. ExPASy Swiss-Prot
Match: Q9AXQ6 (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-07
Identity = 33/71 (46.48%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VSLLT+NG+TKDDLRLPTD++LLA                                Q+KD
Sbjct: 102 VSLLTENGNTKDDLRLPTDDTLLA--------------------------------QVKD 140

Query: 64  GFAEGKDLVVS 75
           GFAEGKDLV+S
Sbjct: 162 GFAEGKDLVLS 140

[Close]

BLAST of CcUC08G157970 vs. ExPASy TrEMBL
Match: A0A2P5Y2T1 (eIF-5a domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA10755 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILI--------------LLNSQHTHIACFLV 63
           VSLLT++G TKDDLRLPTDE+LL Q  L + +              +L+    H  C + 
Sbjct: 102 VSLLTESGDTKDDLRLPTDENLLKQGRLKLSVGELCIYIQLPLRFYILDFVSLHPLCGIA 161

Query: 64  HPFTRFMPRFQIKDGFAEGKDLVVS 75
                 + R QIKDGFAEGKDLVVS
Sbjct: 162 --VVNIIVRLQIKDGFAEGKDLVVS 184

[Close]

BLAST of CcUC08G157970 vs. ExPASy TrEMBL
Match: A0A2G3A4C8 (Eukaryotic translation initiation factor 5A-1 OS=Capsicum annuum OX=4072 GN=T459_04207 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 38/94 (40.43%), Postives = 46/94 (48.94%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VS LT NG+TKD+LRLPTD++LLA                                Q+KD
Sbjct: 42  VSCLTKNGNTKDELRLPTDDTLLA--------------------------------QVKD 100

Query: 64  GFA-EGKDLVVSECHVSHGRGTNLWLEGYWPKEL 97
           GFA EG   V   C V HG G +LW +GYW + L
Sbjct: 102 GFAEEGPGFV---CDVRHGGGADLWYQGYWSQNL 100

[Close]

BLAST of CcUC08G157970 vs. ExPASy TrEMBL
Match: A0A1S3BC90 (Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103488350 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 39/71 (54.93%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VSLLTDNGSTKDDLRLPTDESLLA                                QIKD
Sbjct: 102 VSLLTDNGSTKDDLRLPTDESLLA--------------------------------QIKD 140

Query: 64  GFAEGKDLVVS 75
           GFAEGKDLVVS
Sbjct: 162 GFAEGKDLVVS 140

[Close]

BLAST of CcUC08G157970 vs. ExPASy TrEMBL
Match: A0A7J9BX64 (eIF-5a domain-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_013935 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPF----TRFMPRF 63
           VSLLTD+G TKDDLRLPTDE+LL Q+ + +LI   S+   +   +   F      F    
Sbjct: 102 VSLLTDSGDTKDDLRLPTDENLLKQRLMPLLI---SKPLDVGIPIESKFQWGDCTFKLAE 161

Query: 64  QIKDGFAEGKDLVVS 75
            IK+GFA+GKDLVVS
Sbjct: 162 IIKEGFADGKDLVVS 173

[Close]

BLAST of CcUC08G157970 vs. ExPASy TrEMBL
Match: A0A0A0LPT1 (Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_2G382670 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 38/71 (53.52%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VSLLTDNGSTKDDLRLPTDESLL                                 QIKD
Sbjct: 102 VSLLTDNGSTKDDLRLPTDESLLT--------------------------------QIKD 140

Query: 64  GFAEGKDLVVS 75
           GFAEGKDLVVS
Sbjct: 162 GFAEGKDLVVS 140

[Close]

BLAST of CcUC08G157970 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 53.1 bits (126), Expect = 1.5e-07
Identity = 32/71 (45.07%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VSLLTDNGSTKDDL+LPTDE+LL                                 Q+K+
Sbjct: 101 VSLLTDNGSTKDDLKLPTDEALLT--------------------------------QLKN 139

Query: 64  GFAEGKDLVVS 75
           GF EGKD+VVS
Sbjct: 161 GFEEGKDIVVS 139

[Close]

BLAST of CcUC08G157970 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06
Identity = 31/71 (43.66%), Postives = 35/71 (49.30%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VSLLTDNGSTKDDL+LP D++LL                                 QIK 
Sbjct: 101 VSLLTDNGSTKDDLKLPNDDTLLQ--------------------------------QIKS 139

Query: 64  GFAEGKDLVVS 75
           GF +GKDLVVS
Sbjct: 161 GFDDGKDLVVS 139

[Close]

BLAST of CcUC08G157970 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 44.7 bits (104), Expect = 5.2e-05
Identity = 29/71 (40.85%), Postives = 33/71 (46.48%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQKALHILILLNSQHTHIACFLVHPFTRFMPRFQIKD 63
           VSLLTD+G TKDDL+LPTD+ L AQ  L                                
Sbjct: 101 VSLLTDSGGTKDDLKLPTDDGLTAQMRL-------------------------------- 139

Query: 64  GFAEGKDLVVS 75
           GF EGKD+VVS
Sbjct: 161 GFDEGKDIVVS 139

[Close]

BLAST of CcUC08G157970 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.4e-04
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 0


Query: 4   VSLLTDNGSTKDDLRLPTDESLLAQ 29
           VSLLTD+G TKDDL+LPTD+ L AQ
Sbjct: 101 VSLLTDSGGTKDDLKLPTDDGLTAQ 125

The following BLAST results are available for this feature:

BLAST of CcUC08G157970 vs. NCBI nr


Match Name	E-value	Identity	Description
PPS09895.1	5.2e-07	47.06	hypothetical protein GOBAR_AA10755 [Gossypium barbadense]	[more]
XP_008445267.1	2.6e-06	54.93	PREDICTED: eukaryotic translation initiation factor 5A-4-like [Cucumis melo] >XP...	[more]
PHT89094.1	2.6e-06	40.43	Eukaryotic translation initiation factor 5A-1 [Capsicum annuum]	[more]
XP_027368102.1	4.4e-06	53.52	eukaryotic translation initiation factor 5A-2 isoform X1 [Abrus precatorius]	[more]
KAG2407760.1	5.8e-06	52.11	Eukaryotic translation initiation factor [Vigna angularis]	[more]

BLAST of CcUC08G157970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56336	3.8e-08	50.70	Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EI...	[more]
Q945F4	1.1e-07	49.30	Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa OX=3879 PE=2 SV...	[more]
Q9AXQ4	2.4e-07	49.30	Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum OX=4081 PE...	[more]
P26564	3.2e-07	47.89	Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa OX=3879 PE=2 SV...	[more]
Q9AXQ6	3.2e-07	46.48	Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum OX=4081 PE...	[more]

BLAST of CcUC08G157970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5Y2T1	2.5e-07	47.06	eIF-5a domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA1075...	[more]
A0A2G3A4C8	1.3e-06	40.43	Eukaryotic translation initiation factor 5A-1 OS=Capsicum annuum OX=4072 GN=T459...	[more]
A0A1S3BC90	1.3e-06	54.93	Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103488...	[more]
A0A7J9BX64	3.7e-06	50.67	eIF-5a domain-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_013...	[more]
A0A0A0LPT1	3.7e-06	53.52	Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_2G...	[more]

BLAST of CcUC08G157970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69410.1	1.5e-07	45.07	eukaryotic elongation factor 5A-3	[more]
AT1G13950.1	2.1e-06	43.66	eukaryotic elongation factor 5A-1	[more]
AT1G26630.1	5.2e-05	40.85	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]
AT1G26630.2	4.4e-04	76.00	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 2..78 e-value: 3.7E-6 score: 29.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G157970.1	CcUC08G157970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding