CcUC08G157840 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G157840
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description60S ribosomal protein L39
LocationCicolChr08: 26112583 .. 26116990 (-)
RNA-Seq ExpressionCcUC08G157840
SyntenyCcUC08G157840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCATGTTAATATTAGTTGATAAAATTAGTTTGGGAAATTTCAATCGATGAATTATGCAACTAGATACTTTTCTATCTAATGTGACTTAATTTATCTTCTAAAGTTGGATATTACTTTTTCTTTAATTGAACTTGTATTATTACTCTTAATGTTTCACAAACATTTAAAAATTACTATAAAAAGTACAAATTCATTAAAATTTTGAATATAATTTTAGATTTGAAATGATGTGGTAATGATTAAAAATAAAAATGTAAATTGTCACATCATTCTAAATCATCGCTTTTGGCTTTCTATTAATATTAGAGAATCGCTTTTAGAGTATAAATTATTTAGCAGTTTGGGTAGATATTAAAACCTAATATGGTTTGCCAGTTTTGCCAGAGATTAAAATCTAAAAGTCATTACCACACCCATATTAGATTCTAATATCTGCCAAAACTACTAAATACCTTATACTCTAATTCGGTAATGTTAATGGGTAATCTGGGGCACTTTCGCAACTTTTGAAAGAATATGGGTAGATTGGAAACAAAGATTGTTACCCTAAACCCTAGTTATAGTTATAGGTAGGCCCATTTCAAGCAGGCTTCAAAGTTTTGTTCAAGGAGCTCAAAAAGGCCTTTATGGATCAGCCCAATACATTGTCCCGCCAATAAAATGGGCTAGGCTTTTAATCAACTTGGGGTTGGCAATCGAGCAACATTGGTTTAGCGGTCCACATAAAAAGCTCATATCCTCTTTCACTTGTTGTCTCTGAAATTAGGGTTTCTGCTTCTTGTTCGCCGTTCCCAGCCCTCCCAGCCGGTTCCCGACTCAACAAGATGGTAACTGTTTCTTCCTTGTACTGATTTTCTTTTTGAATTCTTTTTTTCGATTTTTTCTGTGTTACACTTCCGATTGATTTTTGTATTGGGAGGTTTTGTGATGTGAGTTTTCTTAAACGTGTGCAGCCGTCTCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCAATTCCTCACTGGATCCGTCTTAGGACCGACAATACAATCAGGTCCTTATTCTTCCGTTGCGTGTTCCTTCATCTTATCATTTCCATGTTCCTCAGTTTTAAATCTTACGCTGCATTTTTATGTATTGTTCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGTTTCTGAGCTGTTTTGCATGTGATTTTCTCTTTGTCCTTCGCAATTGTTTTGAACCTATTTAAGCGTTAGTTATGGAGAAGACGAAGAATATAGAGCTAAGTTTTTGAATTTTTTTGCCTCTCAATTAAGAACTTATCGAAGAGAAACTCGTGTAGTTTGTAGGCATACTTCTATGCTAAATTTATGTCTGGAGAGATGTCAGTTCGGAAGTTAATCTCGTGTTCGTTTGGTTTAATGCTATTCTAGTTCAGTTTGGTGCCATTTCTTCTCACGGTAGTTTGGAGTTATATTATGGTCTTGATCATTCAAGTATTCCTGTGAATGAGAGGAGGTTGGTATCAACCATATCATCAATTTATAAATTTTCGCTCCGTTTGTAGATTAATTGACTGGCTGCACTAATTTTCATATCTGAACAAATTTATCTCCTAGAAATTTGTTGTATGATCTGACCTATTTAAGAACTTCGATTTTGACTCATGAACTTTTATTCTTTCTATTTGTATGAACTCGCAACTAAATTTCATGTTGAGTTTCTACTATAACATCTAGTACTAATTTGTTTTGAACAAAGAAACTAAGTTGTCATGGCGTTTGGCGATCGGATTTGAAAATTGCAGCAAAGCTTAGTTAATGTGTGACCACTCTGCTCCCTCTGTTATGATCGATCATCTGTGTTGGAAACTTTTACATATAATGTTTGTAACGTGCTCATGAAGTGTTTTTGATGTGTGTGGAAATTTGATTGATATTGGTTTTCATCGTAAATTAATTAAATGTTGATCACTATTACATAGTGAGAGTGTTTGTGCCAACTTGCCTCGACTTGTGATGGTTGCCTGACTTATGAGTAGGTAGTCTACTCCAATGAGGTACCATTTTGAAAGAATCTTTTAGAATAAAAGAATCTAATGAAGAATAATTAAGAAAGTTTTATACTTGGATGTATGACATCTTACCTTTTTAGGAAATGAGTTGTTGTGCTGTTCCATTTTTTTACCCCATATATGTATACCGTAGTATCAACACATATAGTATATGTATATAGTTGTCAGAGTGCTTATTTATGTTTATAGTAGTATAATATAACTACATGAGTTATGTAGAAACTCTAGTACATCATACATAACCACCACTTGTATGTAAATATGATAGTACAATATAATTGCGTTTCTGTTTGAGGCTTGTGTCTGTATATGCAACTAATCAAATTATATGCAACCCGTACATTGATGGGGATGTCTGTTTCTTAGTTATCTTTCTCGGGGAACCCCTGCTGCTTGCAACCTTGCAATTGCTATTCTCTTGATTTTTTCCTTTTCGCTGGCCAACGCTGAAAAGCCGTATACATTAAATTAGTTCCCCTATATCACGAGCAAGATATTCGTATTGATTACATAGACTAAATACAGCTAAAACTTTGGGAGGACACTAAATCGGATTAAAAGTTAACTACTACAAGAATCCCTAGAAAATTGGGATCCCGAAACTACATTTCAAAATACAATTTAATTTGAAAAGTATATATCGTGTTTTTTACATGTATTTTATTGTAATTCAAGGGGAAACCATTTTTAAACTACAAATGTTTAATGGAAGGTGTTAGTGGGTTAGGTGGAAGGATTTTTTAGACCTAATCTAATTGTTCGGGTTATAAATTTTTTCAACCCAAATAACTCCTATTAAAAAATGAACTCAACCGAATCGAACCATGACACATTTGGGTTGGGTTAGTTCGGGTTACTTATGTCATTTATTTAAACATTTATTATAAAAAGAAGTAAAATGTTAATATGTAAAAAATGTATTTACTTATTTTCATATATTGAATTAGAATTAACAACTCAATTTCAATTTATTTTATGAAAATTTTCTTTCTAAAGTATTAAAAAATTGTTTTTAGGAGTTGTTGGAGAAAAAAATATAAAAAAAAAACATGAAATTAAGTAAAACTAGAGTAAATATAAGTATTTATAATTTTATCATAATTAAAAAAGTATATATATATATTAAAATTAATAATAAGTTCGAGTTGAATTTGGTTAGTTAGGTGAACCCATGAATGAACTCAACTCAATCCAACTCAAATGAGTTGATGCCGTACAAATTGGTTGATCGAATTTTTCAAATCGAAGTAGACGAAGAGACGTTCTTGGAGCACGACCATAAAGTTTCCCCGTTTCAAAGTTTCAACTTAGGGATGAGCTTATTTTATGGGCTACACATCTACTTGAAGGTAGGCCCATTTCAACCAGGCATTTGCGGATTGGCCCATTTCATTTAAAATGGGCTAGGCTTTTAATCAACTTGGGGTTGCCTAGAACCGAGGCGAGCAGCATTGTTTTTCCCACATAAAACTCATCTCCTGTTTAACTCGTCCTCTCTGAAATTAGGGTTCCCGCTTCTTGTTCGCTGGTCGTACCCTCGCAGCCGGCTCCCGATTCCGAAGATGGTGACTGTTTCTTCCTTGTTCCGATTTTCTTTTTGTTATCTTGCTTTCGTTGATTTTCTTTTTGTTATCTTGCTTTCGTTTTCTTTTTTCTACTGCAATTTCGATTCATTTTTGTTTTTGGAGGTATGATGTGAGTATTCTTAAACATGCGCAGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTCACTGGATCCGTCTTAGAACCGACAATACCATCAGGTCTTTACTCTTCCGTTGTGTATTGTTCAAATCTTATCATTTCAATATTTCTCAGTTTCAAATCTAACGCTACATTTTGATGTATTGTTCAGGTACAATGCGAAGCGAAGGCATTGGCGCCGCACTAAGCTCGGGTTCTGAGGTGTTTCGCTTGTGATTTTCTCTTCATCCTTCGCAATTGTTTTTGAACCTTTTTAAGCGTTAGTTATGGAGAAGACAAGAATATAGAGCTAGCTTTTTGAATTTTTTGTCTCTCAATTAAGAAGTTCGAAAAGAAACTCGCGTAGTTTGTAGGCTTAGTTCTGTGCTAAATTTATTTCTGGAGTGATGTCAATTCGGAAGTTAATTTCGTGTTCAGTTTGGTGCCATTTCTTCTAACGCTAGTGATTATTGTCTTGATCGTACAAGTATTCATGTGGATGAGAGGAGTTCGATATCTACTAGATCACTAATTTATTATTATTATTATTATTATTCATTCGTAGACTTATTGACTGGCTG

mRNA sequence

ATGGATCCATCGGTCCACATAAAAAGCTCATATCCTCTTTCACTTGTTGTCTCTGAAATTAGGGTTTCTGCTTCTTGTTCGCCGTTCCCAGCCCTCCCAGCCGGTTCCCGACTCAACAAGATGCCGTCTCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCAATTCCTCACTGGATCCGTCTTAGGACCGACAATACAATCAGGTCCTTATTCTTCCGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGTTTCTGAGCTGTTTTGCATTTCGGAAGTTAATCTCGTGTTCGTTTGGTTTAATGCTATTCTAGTTCAGTTTGGTGCCATTTCTTCTCACGGTAGTTTGGAGTTATATTATGGTCTTGATCATTCAAGTATTCCTGTGAATGAGAGGAGTGAGAGTGTTTGTGCCAACTTGCCTCGACTTGGTTCCCGCTTCTTGTTCGCTGGTCGTACCCTCGCAGCCGGCTCCCGATTCCGAAGATGGTATGATGTGAGTATTCTTAAACATGCGCAGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTCACTGGATCCGTCTTAGAACCGACAATACCATCAGGTACAATGCGAAGCGAAGGCATTGGCGCCGCACTAAGCTCGGGTTCTGAGGTGTTTCGCTTGTGATTTTCTCTTCATCCTTCGCAATTGTTTTTGAACCTTTTTAAGCGTTAGTTATGGAGAAGACAAGAATATAGAGCTAGCTTTTTGAATTTTTTGTCTCTCAATTAAGAAGTTCGAAAAGAAACTCGCGTAGTTTGTAGGCTTAGTTCTGTGCTAAATTTATTTCTGGAGTGATGTCAATTCGGAAGTTAATTTCGTGTTCAGTTTGGTGCCATTTCTTCTAACGCTAGTGATTATTGTCTTGATCGTACAAGTATTCATGTGGATGAGAGGAGTTCGATATCTACTAGATCACTAATTTATTATTATTATTATTATTATTCATTCGTAGACTTATTGACTGGCTG

Coding sequence (CDS)

ATGGATCCATCGGTCCACATAAAAAGCTCATATCCTCTTTCACTTGTTGTCTCTGAAATTAGGGTTTCTGCTTCTTGTTCGCCGTTCCCAGCCCTCCCAGCCGGTTCCCGACTCAACAAGATGCCGTCTCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCAATTCCTCACTGGATCCGTCTTAGGACCGACAATACAATCAGGTCCTTATTCTTCCGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGTTTCTGAGCTGTTTTGCATTTCGGAAGTTAATCTCGTGTTCGTTTGGTTTAATGCTATTCTAGTTCAGTTTGGTGCCATTTCTTCTCACGGTAGTTTGGAGTTATATTATGGTCTTGATCATTCAAGTATTCCTGTGAATGAGAGGAGTGAGAGTGTTTGTGCCAACTTGCCTCGACTTGGTTCCCGCTTCTTGTTCGCTGGTCGTACCCTCGCAGCCGGCTCCCGATTCCGAAGATGGTATGATGTGAGTATTCTTAAACATGCGCAGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTCACTGGATCCGTCTTAGAACCGACAATACCATCAGGTACAATGCGAAGCGAAGGCATTGGCGCCGCACTAAGCTCGGGTTCTGA

Protein sequence

MDPSVHIKSSYPLSLVVSEIRVSASCSPFPALPAGSRLNKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSLFFRTMRSEGTGAALSSVSELFCISEVNLVFVWFNAILVQFGAISSHGSLELYYGLDHSSIPVNERSESVCANLPRLGSRFLFAGRTLAAGSRFRRWYDVSILKHAQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Homology
[Close]
BLAST of CcUC08G157840 vs. NCBI nr
Match: XP_022962571.1 (uncharacterized protein LOC111462968 [Cucurbita moschata])

HSP 1 Score: 119.8 bits (299), Expect = 3.2e-23
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 0 

Query: 4   SVHIKSSYPLSLVVSEIRVSASCSPFPALPAGSRLNKMPSHKTFRIKKKLAKKMRQNRPI 63
           +VHIK S PLSLV SEIRVS SC  F AL AGSR +KMPSHKTFRIKKKLAKKMRQNRPI
Sbjct: 43  AVHIKCSSPLSLVFSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPI 102

Query: 64  PHWIRLRTDNTIR 77
           PHWIRLRTDNTIR
Sbjct: 103 PHWIRLRTDNTIR 115

[Close]
BLAST of CcUC08G157840 vs. NCBI nr
Match: KAG7029487.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.2 bits (295), Expect = 9.3e-23
Identity = 61/73 (83.56%), Postives = 64/73 (87.67%), Query Frame = 0 

Query: 4   SVHIKSSYPLSLVVSEIRVSASCSPFPALPAGSRLNKMPSHKTFRIKKKLAKKMRQNRPI 63
           +VHI+ S PLSLV SEIRVS SC  F AL AGSR +KMPSHKTFRIKKKLAKKMRQNRPI
Sbjct: 32  AVHIRCSSPLSLVSSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPI 91

Query: 64  PHWIRLRTDNTIR 77
           PHWIRLRTDNTIR
Sbjct: 92  PHWIRLRTDNTIR 104

[Close]
BLAST of CcUC08G157840 vs. NCBI nr
Match: XP_030966914.1 (60S ribosomal protein L39-3 isoform X1 [Quercus lobata])

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-20
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 0 

Query: 177 VSILKHAQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 235
           + +L +AQPSHKTF IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 3   IIVLLYAQPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 60

[Close]
BLAST of CcUC08G157840 vs. NCBI nr
Match: EXB38641.1 (60S ribosomal protein L39 [Morus notabilis])

HSP 1 Score: 109.4 bits (272), Expect = 4.3e-20
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 182 HAQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 235
           ++QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2   NSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54

[Close]
BLAST of CcUC08G157840 vs. NCBI nr
Match: TXG62233.1 (hypothetical protein EZV62_013596 [Acer yangbiense])

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-20
Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 0 

Query: 163 RTLAAGSRFRRWYDVSILKHAQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNA 222
           R  AAG  F   +    ++   PSHKTF IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNA
Sbjct: 131 RVFAAGCHFESKFRSRSIEAKMPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNA 190

Query: 223 KRRHWRRTKLGF 235
           KRRHWRRTKLGF
Sbjct: 191 KRRHWRRTKLGF 202

[Close]
BLAST of CcUC08G157840 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-21
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 185 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 235
           PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2   PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CcUC08G157840 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-21
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 185 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 235
           PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2   PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CcUC08G157840 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-21
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 185 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 235
           PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2   PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CcUC08G157840 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.9e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 185 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 235
           PSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2   PSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CcUC08G157840 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-20
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 185 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 235
           PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2   PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CcUC08G157840 vs. ExPASy TrEMBL
Match: A0A0E0GE29 (Uncharacterized protein OS=Oryza nivara OX=4536 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 87/194 (44.85%), Postives = 95/194 (48.97%), Query Frame = 0 

Query: 41  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSLFFRTMRSEGTGAALSSVSELFC 100
           MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNT                          
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNT-------------------------- 60

Query: 101 ISEVNLVFVWFNAILVQFGAISSHGSLELYYGLDHSSIPVNERSESVCANLPRLGSRFLF 160
                               IS + SL    G D                          
Sbjct: 61  --------------------ISVYASL----GCD-------------------------- 101

Query: 161 AGRTLAAGSRFRRWYDVSILKHAQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRY 220
                            S++   +PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRY
Sbjct: 121 -----------------SMMLFIKPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRY 101

Query: 221 NAKRRHWRRTKLGF 235
           NAKRRHWRRTKLGF
Sbjct: 181 NAKRRHWRRTKLGF 101

[Close]
BLAST of CcUC08G157840 vs. ExPASy TrEMBL
Match: A0A6J1HDM7 (uncharacterized protein LOC111462968 OS=Cucurbita moschata OX=3662 GN=LOC111462968 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 0 

Query: 4   SVHIKSSYPLSLVVSEIRVSASCSPFPALPAGSRLNKMPSHKTFRIKKKLAKKMRQNRPI 63
           +VHIK S PLSLV SEIRVS SC  F AL AGSR +KMPSHKTFRIKKKLAKKMRQNRPI
Sbjct: 43  AVHIKCSSPLSLVFSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPI 102

Query: 64  PHWIRLRTDNTIR 77
           PHWIRLRTDNTIR
Sbjct: 103 PHWIRLRTDNTIR 115

[Close]
BLAST of CcUC08G157840 vs. ExPASy TrEMBL
Match: W9R5P2 (60S ribosomal protein L39 OS=Morus notabilis OX=981085 GN=L484_014456 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-20
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 182 HAQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 235
           ++QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2   NSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54

[Close]
BLAST of CcUC08G157840 vs. ExPASy TrEMBL
Match: A0A5C7HYJ7 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_013596 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-20
Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 0 

Query: 163 RTLAAGSRFRRWYDVSILKHAQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNA 222
           R  AAG  F   +    ++   PSHKTF IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNA
Sbjct: 131 RVFAAGCHFESKFRSRSIEAKMPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNA 190

Query: 223 KRRHWRRTKLGF 235
           KRRHWRRTKLGF
Sbjct: 191 KRRHWRRTKLGF 202

[Close]
BLAST of CcUC08G157840 vs. ExPASy TrEMBL
Match: A0A1D6QC37 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=103654171 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-20
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 0 

Query: 161 AGRTLAAGSRFRRWYDVSILKHAQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRY 220
           A R L    R RR + VS    A PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRY
Sbjct: 26  AFRLLGFSRRRRRRFVVSAA--AMPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRY 85

Query: 221 NAKRRHWRRTKLGF 235
           NAKRRHWRRTKLGF
Sbjct: 86  NAKRRHWRRTKLGF 97

[Close]
BLAST of CcUC08G157840 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 101.7 bits (252), Expect = 8.4e-22
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 185 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 235
           PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2   PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CcUC08G157840 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-20
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 185 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 235
           PSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 2   PSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CcUC08G157840 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-18
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 192 IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 235
           IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2   IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

The following BLAST results are available for this feature:
BLAST of CcUC08G157840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022962571.13.2e-2384.93uncharacterized protein LOC111462968 [Cucurbita moschata][more]
KAG7029487.19.3e-2383.5660S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_030966914.11.9e-2087.9360S ribosomal protein L39-3 isoform X1 [Quercus lobata][more]
EXB38641.14.3e-2096.2360S ribosomal protein L39 [Morus notabilis][more]
TXG62233.15.6e-2073.61hypothetical protein EZV62_013596 [Acer yangbiense][more]
BLAST of CcUC08G157840 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6KAJ82.4e-2196.0060S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P... [more]
P514262.4e-2196.0060S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P... [more]
P514252.4e-2196.0060S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1[more]
Q5SMI46.9e-2194.0060S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P... [more]
P514241.2e-2094.0060S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2[more]
BLAST of CcUC08G157840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0E0GE291.3e-2744.85Uncharacterized protein OS=Oryza nivara OX=4536 PE=3 SV=1[more]
A0A6J1HDM71.5e-2384.93uncharacterized protein LOC111462968 OS=Cucurbita moschata OX=3662 GN=LOC1114629... [more]
W9R5P22.1e-2096.2360S ribosomal protein L39 OS=Morus notabilis OX=981085 GN=L484_014456 PE=3 SV=1[more]
A0A5C7HYJ72.7e-2073.61Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_013596 PE=3 SV=1[more]
A0A1D6QC373.6e-2077.0360S ribosomal protein L39 OS=Zea mays OX=4577 GN=103654171 PE=3 SV=1[more]
BLAST of CcUC08G157840 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G31985.18.4e-2294.00Ribosomal protein L39 family protein [more]
AT3G02190.12.7e-2090.00Ribosomal protein L39 family protein [more]
AT2G25210.12.5e-1897.67Ribosomal protein L39 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 49..77
e-value: 1.6E-11
score: 43.7
coord: 192..232
e-value: 5.9E-21
score: 73.8
IPR023626Ribosomal protein L39e domain superfamilyGENE3D1.10.1620.10Ribosomal protein L39ecoord: 185..234
e-value: 3.9E-27
score: 96.0
coord: 41..82
e-value: 1.7E-18
score: 68.3
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 186..233
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 43..77
NoneNo IPR availablePANTHERPTHR19970:SF2460S RIBOSOMAL PROTEIN L39-2coord: 26..76
coord: 159..234
NoneNo IPR availablePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 159..234
NoneNo IPR availablePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 26..76
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 213..229

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G157840.1CcUC08G157840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome