CcUC08G157740 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGAATTGCAGCAATCGTATGGCCCACCCTATTTTCAAAACTACCCTTCAATTTAAAACAAAATTACGATCCACCCACACTCCCCACTCCGATCCCGCCTATAAATTCCACCGCCGAGACGTGCTAAGTTTACCGAAACGAATCCGAAATCCCCATTTACAGAGTGAACGAACAAAAACGCAAAATCAACCCAATCCCATGAAGAAGGAAACAAGCGGGCCTGTTCTCCGGCCATTTCCCGCCGCCGCCCGATTCCACTCTCCGATCTCTTCTACGGGGACTTCTCCGTTCGCCGCCTCAACTAACTTCGGCTTCTCTCCCGGATCCTCAACCTTTTTCCAAAACAACGACGATCACAACCACCATCGACCCACTTCCCCTACTCGAGTCAATATTTATTCCACTCCCCTGTCTCGCTCTGTTCGATTTTCCATCGATCACCGGTCCGGTTCGCCGAGTCGATCCATCACAGTTTCCAACCGAAACTCGCCCGTTTCTCTACCCAAAAAGCCGTGCATGTGTTCGCCCACGACTCACCCCGGTTCCTTCCGGTGCAGTCTACATAAAAAGTCGGGAAGTAGCGGTCGCCATCAGGCGTCGTCGGCGTATTCGTCGAGCGGTTTGAACATGCGGAGGTCTGCGATGACGAACTCGCTGGTGAGAATCGGTGGCGTTGAGGGAGACTGGGTCAAGCGAGCGTTGACTGCTTTGATTCGACCGTCTTCACATCAGCTGAGAAGGAGAGCAAATTTCCGACCGCAGCCCAGCCGGCTTTCGGTGATGTCGACGCCCGAAAATCTTCAATACAAAGATTGA ATGGTGAATTGCAGCAATCGTATGGCCCACCCTATTTTCAAAACTACCCTTCAATTTAAAACAAAATTACGATCCACCCACACTCCCCACTCCGATCCCGCCTATAAATTCCACCGCCGAGACGTGCTAAGTTTACCGAAACGAATCCGAAATCCCCATTTACAGAGTGAACGAACAAAAACGCAAAATCAACCCAATCCCATGAAGAAGGAAACAAGCGGGCCTGTTCTCCGGCCATTTCCCGCCGCCGCCCGATTCCACTCTCCGATCTCTTCTACGGGGACTTCTCCGTTCGCCGCCTCAACTAACTTCGGCTTCTCTCCCGGATCCTCAACCTTTTTCCAAAACAACGACGATCACAACCACCATCGACCCACTTCCCCTACTCGAGTCAATATTTATTCCACTCCCCTGTCTCGCTCTGTTCGATTTTCCATCGATCACCGGTCCGGTTCGCCGAGTCGATCCATCACAGTTTCCAACCGAAACTCGCCCGTTTCTCTACCCAAAAAGCCGTGCATGTGTTCGCCCACGACTCACCCCGGTTCCTTCCGGTGCAGTCTACATAAAAAGTCGGGAAGTAGCGGTCGCCATCAGGCGTCGTCGGCGTATTCGTCGAGCGGTTTGAACATGCGGAGGTCTGCGATGACGAACTCGCTGGTGAGAATCGGTGGCGTTGAGGGAGACTGGGTCAAGCGAGCGTTGACTGCTTTGATTCGACCGTCTTCACATCAGCTGAGAAGGAGAGCAAATTTCCGACCGCAGCCCAGCCGGCTTTCGGTGATGTCGACGCCCGAAAATCTTCAATACAAAGATTGA ATGGTGAATTGCAGCAATCGTATGGCCCACCCTATTTTCAAAACTACCCTTCAATTTAAAACAAAATTACGATCCACCCACACTCCCCACTCCGATCCCGCCTATAAATTCCACCGCCGAGACGTGCTAAGTTTACCGAAACGAATCCGAAATCCCCATTTACAGAGTGAACGAACAAAAACGCAAAATCAACCCAATCCCATGAAGAAGGAAACAAGCGGGCCTGTTCTCCGGCCATTTCCCGCCGCCGCCCGATTCCACTCTCCGATCTCTTCTACGGGGACTTCTCCGTTCGCCGCCTCAACTAACTTCGGCTTCTCTCCCGGATCCTCAACCTTTTTCCAAAACAACGACGATCACAACCACCATCGACCCACTTCCCCTACTCGAGTCAATATTTATTCCACTCCCCTGTCTCGCTCTGTTCGATTTTCCATCGATCACCGGTCCGGTTCGCCGAGTCGATCCATCACAGTTTCCAACCGAAACTCGCCCGTTTCTCTACCCAAAAAGCCGTGCATGTGTTCGCCCACGACTCACCCCGGTTCCTTCCGGTGCAGTCTACATAAAAAGTCGGGAAGTAGCGGTCGCCATCAGGCGTCGTCGGCGTATTCGTCGAGCGGTTTGAACATGCGGAGGTCTGCGATGACGAACTCGCTGGTGAGAATCGGTGGCGTTGAGGGAGACTGGGTCAAGCGAGCGTTGACTGCTTTGATTCGACCGTCTTCACATCAGCTGAGAAGGAGAGCAAATTTCCGACCGCAGCCCAGCCGGCTTTCGGTGATGTCGACGCCCGAAAATCTTCAATACAAAGATTGA MVNCSNRMAHPIFKTTLQFKTKLRSTHTPHSDPAYKFHRRDVLSLPKRIRNPHLQSERTKTQNQPNPMKKETSGPVLRPFPAAARFHSPISSTGTSPFAASTNFGFSPGSSTFFQNNDDHNHHRPTSPTRVNIYSTPLSRSVRFSIDHRSGSPSRSITVSNRNSPVSLPKKPCMCSPTTHPGSFRCSLHKKSGSSGRHQASSAYSSSGLNMRRSAMTNSLVRIGGVEGDWVKRALTALIRPSSHQLRRRANFRPQPSRLSVMSTPENLQYKD Homology
BLAST of CcUC08G157740 vs. NCBI nr
Match: XP_038885670.1 (uncharacterized protein LOC120075978 [Benincasa hispida]) HSP 1 Score: 335.1 bits (858), Expect = 5.6e-88 Identity = 178/206 (86.41%), Postives = 184/206 (89.32%), Query Frame = 0
BLAST of CcUC08G157740 vs. NCBI nr
Match: XP_008445241.1 (PREDICTED: nuclear transcription factor Y subunit gamma-like [Cucumis melo] >KAA0064910.1 nuclear transcription factor Y subunit gamma-like [Cucumis melo var. makuwa]) HSP 1 Score: 315.5 bits (807), Expect = 4.6e-82 Identity = 174/203 (85.71%), Postives = 178/203 (87.68%), Query Frame = 0
BLAST of CcUC08G157740 vs. NCBI nr
Match: XP_004138717.1 (uncharacterized protein LOC101214709 [Cucumis sativus] >KGN62968.1 hypothetical protein Csa_021857 [Cucumis sativus]) HSP 1 Score: 301.2 bits (770), Expect = 9.0e-78 Identity = 168/202 (83.17%), Postives = 173/202 (85.64%), Query Frame = 0
BLAST of CcUC08G157740 vs. NCBI nr
Match: XP_023547160.1 (uncharacterized protein LOC111806049 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 296.2 bits (757), Expect = 2.9e-76 Identity = 161/203 (79.31%), Postives = 171/203 (84.24%), Query Frame = 0
BLAST of CcUC08G157740 vs. NCBI nr
Match: KAG6598561.1 (Protein MEMO1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 293.1 bits (749), Expect = 2.4e-75 Identity = 160/201 (79.60%), Postives = 170/201 (84.58%), Query Frame = 0
BLAST of CcUC08G157740 vs. ExPASy TrEMBL
Match: A0A5A7VCJ2 (Nuclear transcription factor Y subunit gamma-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002280 PE=4 SV=1) HSP 1 Score: 315.5 bits (807), Expect = 2.2e-82 Identity = 174/203 (85.71%), Postives = 178/203 (87.68%), Query Frame = 0
BLAST of CcUC08G157740 vs. ExPASy TrEMBL
Match: A0A1S3BC71 (nuclear transcription factor Y subunit gamma-like OS=Cucumis melo OX=3656 GN=LOC103488327 PE=4 SV=1) HSP 1 Score: 315.5 bits (807), Expect = 2.2e-82 Identity = 174/203 (85.71%), Postives = 178/203 (87.68%), Query Frame = 0
BLAST of CcUC08G157740 vs. ExPASy TrEMBL
Match: A0A0A0LME8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382420 PE=4 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 4.3e-78 Identity = 168/202 (83.17%), Postives = 173/202 (85.64%), Query Frame = 0
BLAST of CcUC08G157740 vs. ExPASy TrEMBL
Match: A0A6J1HGM5 (uncharacterized protein LOC111462780 OS=Cucurbita moschata OX=3662 GN=LOC111462780 PE=4 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 2.2e-74 Identity = 159/201 (79.10%), Postives = 168/201 (83.58%), Query Frame = 0
BLAST of CcUC08G157740 vs. ExPASy TrEMBL
Match: A0A6J1K7C8 (uncharacterized protein LOC111491813 OS=Cucurbita maxima OX=3661 GN=LOC111491813 PE=4 SV=1) HSP 1 Score: 276.9 bits (707), Expect = 8.8e-71 Identity = 153/202 (75.74%), Postives = 164/202 (81.19%), Query Frame = 0
BLAST of CcUC08G157740 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related ) HSP 1 Score: 190.3 bits (482), Expect = 2.1e-48 Identity = 112/207 (54.11%), Postives = 152/207 (73.43%), Query Frame = 0
BLAST of CcUC08G157740 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related ) HSP 1 Score: 186.4 bits (472), Expect = 3.0e-47 Identity = 109/188 (57.98%), Postives = 144/188 (76.60%), Query Frame = 0
BLAST of CcUC08G157740 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related ) HSP 1 Score: 186.4 bits (472), Expect = 3.0e-47 Identity = 109/188 (57.98%), Postives = 144/188 (76.60%), Query Frame = 0
BLAST of CcUC08G157740 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related ) HSP 1 Score: 82.4 bits (202), Expect = 6.1e-16 Identity = 64/168 (38.10%), Postives = 90/168 (53.57%), Query Frame = 0
BLAST of CcUC08G157740 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 42.4 bits (98), Expect = 7.0e-04 Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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