CcUC08G155940 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G155940
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 24382647 .. 24384713 (+)
RNA-Seq ExpressionCcUC08G155940
SyntenyCcUC08G155940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCAATCCTTCAATAAGAATCATGTACGAAGCCTCGGTCGGTTTACAGCCTCTGGCAACCATGTATGCCAAGAAATCGATGGCTCTTACAGTTTGTCGAACCTTACAGAGTCCTAACATGATAGAGTTGTACGTAATAGCATTTGGCTTCACACCCATTTCTTCTAAATCATGGAAAAATGCAATTGCTTCATCAACTTTTCCTTCTCTGCTCAGTCCTCCGACAAGCGAGGAGTATGTAATTATATCGGGCTTGAGTCCTTTTCCCTTCATCTCATCTAGAAGTTTTATGGCATCCTCTGTTTTACCTACCTTTGACAGCCCATCAATGACTGTGTTATACGTAATCAATACAGGAGAACAACCTTTACTACCAAGCTGATTCAGTATCTCAACTGCAACATCCACCTTCCCATCTTTGCACAATGCTGTCAATAGAGTATTATAAGTCACAATATCAGGGTAACAGCCTCTTGAAACCATGATATCCAAATACTCGATCGCCCGATCCATCTTCTTCTCTTTGCAGAATCCATGGAGCAATGGGTTATAGCTCAAGGAATTTGGAGTACATCCATGTTGAGGCATCTTTTCCAAAACATCGATTGCTCGACCAAGCAACCCCTTTCGACACAAGAAATTAATCAAGATATTGAAAGTGACAACACTTGGCGAACATCCCTTCCGAACCATTTCAGCCAGCAACTTCTCGGCGTCCATCCACCTCCCTGTACTACACATACTACGCAAGATGATGTTATGAGTTATTACATTAGGTTGACAGCCATAAGAAGGCATATGATTCAAGAAATTAATAGCTTCATCTAACCTTCCTTCCTTACAAATCCCATTTATAAGAACATTGTAAGTAACAACATCAGGCTTACATCCTTTATCCCTCATTTCATCCAACAATTTCATTGCTTGCCCAACTCCACTCTCCTTACAAGTTGCTTCAATCAAAATAGTGTAAGTTATTACATCAGGATAACACTCCCTTTGCAACTGTCTGTCAAGAACTTCCATTGCTTGCTTCAATTTCCCACTATCACAAAGCGTACGCAAGATTGTATTGTATGTAACAACATCAGGAGAAACACTCATTCGATCCAAAAGTTGCAAAGCACTGCCAATTTCACCAGATTTACAGTAACCACTAATAAGAACATTGTAAGTTATCACATCAGGAACGGCCCCAGAATCTTCTAAAATTTCCATTACCCTAGTTGCTTTCCTAGTCTTTCCAGTTTTACACAAACCACGAATCAAACTAGTACAAGCAATTATATCAGGAATATCACCACGATAAACCATATCCTCCAGAAATTTAAACCCTTCTTCCAATTCCCCATTTCTTACCAGTCGACGAAGATGATTATTGTTCTCGAATTCCTCAAAACTCTGCGAATGATTCGAAGAAGAAGATGATGAGGAACTGGAGCCATTCAAATGGGTATGGGGATTTTTCTCCCCATGTTGCAATCTACCATTGGAATTAAATGTATCGACCCTCGGAACCGCACGAACACGTTGTTCTTCAGGACAATCAGAAGGAATAACGAGAAACCGAGGTTTACCTTTTTCTCCTACATAAAGCCTTAACGAATTGGTCTCCGACGAAACCCTTGCCTTGGCCCTAACTTTCCGGCCGGGATTTTTGGTGGTATGACGGTGAAACAAGCAAAACCCATCTGTATAATGCTTTGCAGGCAAGGTTACATCCATAACTCACCTTCAACTGGAAGGAAACAAAAGGTTTTGATGCTTAGAACTCCATTTTAATCGAATGTGAAGAAATTAAAGAAGTGAAGGGCAATGGGGCGTTGGTTTTCCAGTCTAGGGAAGGGAAGAGATTGGAATGCAAAAGGAGAGAGATTCAGAGAGTGGGAAACTTACGGTGAGTGTAAAAATGGAGGTGGGAGAGTGGTGAGGCGGCGTTTTTGCTTATCCAGTATTCCAGTTTCTGAGCCAGTCGTCGTCTTCCTCTGGGGAAAGTGATGCTGGACGGCCAAGGCAAGTCACTCAAGCAAGGCTAGCCAAATGGGTCCGTGGCCCAATCAAATTCTAG

mRNA sequence

GCCAATCCTTCAATAAGAATCATGTACGAAGCCTCGGTCGGTTTACAGCCTCTGGCAACCATGTATGCCAAGAAATCGATGGCTCTTACAGTTTGTCGAACCTTACAGAGTCCTAACATGATAGAGTTGTACGTAATAGCATTTGGCTTCACACCCATTTCTTCTAAATCATGGAAAAATGCAATTGCTTCATCAACTTTTCCTTCTCTGCTCAGTCCTCCGACAAGCGAGGAGTATGAGAACAACCTTTACTACCAAGCTGATTCAGTATCTCAACTGCAACATCCACCTTCCCATCTTTGCACAATGCTGTCAATAGAGTATTATAAGTCACAATATCAGGAATCCATGGAGCAATGGGTTATAGCTCAAGGAATTTGGAGTACATCCATGTTGAGGCATCTTTTCCAAAACATCGATTGCTCGACCAAGCAACCCCTTTCGACACAAGAAATTAATCAAGATATTGAAAGTGACAACACTTGGCGAACATCCCTTCCGAACCATTTCAGCCAGCAACTTCTCGGCGTCCATCCACCTCCCTGTACTACACATACTACGCAAGATGATGTTATGATCGACGAAGATGATTATTGTTCTCGAATTCCTCAAAACTCTGCGAATGATTCGAAGAAGAAGATGATGAGGAACTGGAGCCATTCAAATGGCCTTAACGAATTGGTCTCCGACGAAACCCTTGCCTTGGCCCTAACTTTCCGGCCGGGATTTTTGGTGGGAAGGGAAGAGATTGGAATGCAAAAGGAGAGAGATTCAGAGAGTGGGAAACTTACGTTTCTGAGCCAGTCGTCGTCTTCCTCTGGGGAAAGTGATGCTGGACGGCCAAGGCAAGTCACTCAAGCAAGGCTAGCCAAATGGGTCCGTGGCCCAATCAAATTCTAG

Coding sequence (CDS)

GCCAATCCTTCAATAAGAATCATGTACGAAGCCTCGGTCGGTTTACAGCCTCTGGCAACCATGTATGCCAAGAAATCGATGGCTCTTACAGTTTGTCGAACCTTACAGAGTCCTAACATGATAGAGTTGTACGTAATAGCATTTGGCTTCACACCCATTTCTTCTAAATCATGGAAAAATGCAATTGCTTCATCAACTTTTCCTTCTCTGCTCAGTCCTCCGACAAGCGAGGAGTATGAGAACAACCTTTACTACCAAGCTGATTCAGTATCTCAACTGCAACATCCACCTTCCCATCTTTGCACAATGCTGTCAATAGAGTATTATAAGTCACAATATCAGGAATCCATGGAGCAATGGGTTATAGCTCAAGGAATTTGGAGTACATCCATGTTGAGGCATCTTTTCCAAAACATCGATTGCTCGACCAAGCAACCCCTTTCGACACAAGAAATTAATCAAGATATTGAAAGTGACAACACTTGGCGAACATCCCTTCCGAACCATTTCAGCCAGCAACTTCTCGGCGTCCATCCACCTCCCTGTACTACACATACTACGCAAGATGATGTTATGATCGACGAAGATGATTATTGTTCTCGAATTCCTCAAAACTCTGCGAATGATTCGAAGAAGAAGATGATGAGGAACTGGAGCCATTCAAATGGCCTTAACGAATTGGTCTCCGACGAAACCCTTGCCTTGGCCCTAACTTTCCGGCCGGGATTTTTGGTGGGAAGGGAAGAGATTGGAATGCAAAAGGAGAGAGATTCAGAGAGTGGGAAACTTACGTTTCTGAGCCAGTCGTCGTCTTCCTCTGGGGAAAGTGATGCTGGACGGCCAAGGCAAGTCACTCAAGCAAGGCTAGCCAAATGGGTCCGTGGCCCAATCAAATTCTAG

Protein sequence

ANPSIRIMYEASVGLQPLATMYAKKSMALTVCRTLQSPNMIELYVIAFGFTPISSKSWKNAIASSTFPSLLSPPTSEEYENNLYYQADSVSQLQHPPSHLCTMLSIEYYKSQYQESMEQWVIAQGIWSTSMLRHLFQNIDCSTKQPLSTQEINQDIESDNTWRTSLPNHFSQQLLGVHPPPCTTHTTQDDVMIDEDDYCSRIPQNSANDSKKKMMRNWSHSNGLNELVSDETLALALTFRPGFLVGREEIGMQKERDSESGKLTFLSQSSSSSGESDAGRPRQVTQARLAKWVRGPIKF
Homology
[Close]
BLAST of CcUC08G155940 vs. ExPASy TrEMBL
Match: A0A0A9IFS0 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-05
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 2   NPSIRIMYEASVGLQPLATMYAKKSMALTVCRTLQSPNMIELYVIAFGFTPISSKSWKNA 61
           +P IR++Y A  G  P +T+  +   AL+   TL S +MIE YV  FG TP S  S  + 
Sbjct: 27  HPLIRLLYTAQSGATPSSTIRRRTPSALSTAPTLHSLSMIEQYVTMFGETPWSRISLNSL 86

Query: 62  IASSTFPSLLSPPTSEEYENNL 84
            ASST PSL  P T+  Y+  L
Sbjct: 87  TASSTLPSLKRPSTTAVYDTTL 108

The following BLAST results are available for this feature:
BLAST of CcUC08G155940 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G155940 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G155940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9IFS02.4e-0542.68Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of CcUC08G155940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 252..287
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..280

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G155940.1CcUC08G155940.1mRNA