CcUC08G155180 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G155180
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RNA-binding protein 38-like
Location	CicolChr08: 23576625 .. 23581791 (+)
RNA-Seq Expression	CcUC08G155180
Synteny	CcUC08G155180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATAATAATTTCCCCCTTAATCATCCCCCGCCCTACGCCGGCGACACCACGTGGACCAAACTCTTCGTCGGAGGCTTGGCTTGGGAGACTCAATCCCATGAAATGCACTCTTTTTTCCAACAATTCGGAGATATTCTTGAAGCGGTCATTATTCAAGATAAACACACCGGAAAATCCAAAGGCTACGGATTCGTAAGTTTTCCCTTTCCCTTAAATTTTCCTTTTTTTTTTTCCTCTTTTTTAATTTTAATTTTGTGTTGTTTTAAATCTAATTAAATTAAGTTAATTAATTAGGTCACTTTTAAAGATCCTGAATCCGCTAGAAGGGCATGTGCGAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAATTGTAATATCGCCGCCTTCGGCCGTCCTCGTCCTCCGCCCCCGTCGCCGTCTCACGGAGGTGATCTCCCCGATTAAACTGAACTTAACTTTACTAAATTTATTGAGTAATTATTTTTAAAATTTTTGCTTGATTCTTATAGGAAGAAATCAAATTGGGAATCTCCAAAATACAACTCCGGCGGCTGCTGGCTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTCATTTTTCCACAATATAGGTATGTGGGCTAGCTATATTCTTAAAATTCCCAGAAAATATGAGCTGTAAATGGAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATTTGAGTTTTACATTTATTTTGATTTTAGTGAATTAAGTTAAACGGTTTGATTTTTGGTATATTTTTTAAAATTAAGCTAATTCAACTTCCAGTTATCAGTTCTATGTTGTTGTGTTGTTTACATTTACAAATATTTTCAAAATTAAAGCCAATTATTCAAAATTGTTTTCCAAATTTGTCTTTAGAAATTAGCTAAAAATTCAAATAGTCTACCTATAAAATGTGAAAACATGAATAAGAAAGTGTGTGAAGAATAAACAAACACAAATTTTAAATATAAAAGATCATATAATTATCTAAGGAACTTTAATGATGCAATTTTAAATATGCGTATTAGTATCTCAATTTGAGAATAAGATATCAAGTCAAATAAATTAGAAATAAGTATTTGACAATTTGGATGCTGAAGAAAAGATCATATAGCAATCTCAAGTATCAAAATCATTAATTTTTTAAAGTTTACACATCTCATCCAACCTGTTAAAAGTTGAGTAACTAAAATAGAATGCATAATTAAAGTAATTAGAATTAAATGTTGAAACTTGAGTTAAAATGGTTGTGCAGGCTATTTATAATCCACAACTTCAACAACCACAATTGTACCAGCAATCACCATCTTCAACAGCATCTTCTTCTTCATATTATTATGGCTATGGCTATGGCTATTCTTCTTCATCATCTTCTTCACATCCTCCAAGAGGAGCATTTTCATTACATGGCCATGCCCCTTCACCATTATCATCATCACCATCATCATATTTTCCTTACTATACAAATTACACCCACATGCAACAAGGCTTATTCTACACTCCAATGCACCAGATCATTACTCCAAGTACTGGTAAATTATAATTATCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCATCATCATATTTAATTATATTCTTTCAATTGGGAATTTAATTGCATGAACATCAGCATGTGACGCTATATATTATCTATATGAAATGAACATCTCATATTGATTATTATGAGATGAAATTTGATTAGAATTATGAGGAGGGGAATTTAGGGTTATTGTGTCTTTGTGTTTGAAAGAGAAGCACATGGGTTAAGCTTGAGGCCATGTGATGAATGAGCTGTCTAATATACCCATGAAAATGGGTGAATGGAAAGTCATGACAGATTGGAATCACCAACATACATAAATAGTGACTCCCAACTTCTTTTCCTTTTTGTTTTTTTTTTTTTTTTTTAATTCTTAATTCCAAGTCATTGGTTTGTGTATATATTAGGTGGTTTGGTCATTAATGATTTTCAACTTTTTAAAGAAAATTAATACTTGTATTAGTTTTTGAAACTTGATTATTTAAAATATTAATAAAAAGTGGATAACAAACATAGAAACTTATAAGTAAAAGTATTTATAAGCTTAATTTAAAAAAAAAAAAAAAATTGTTAGTAAATAGGGCCTAAATTATTAAATTTGTCCTTTTGGCATGTAGACTTAAAAAAGTGTATATAATAGTCCCTCAAACATTCAATTTTGTGTCCAAAAAAGTCTTAATATTTCACTTTTGTGTTAAATAGGTCTTTGACCTCTACGATGTTTTCCATGACCTATTAGATACTAAATTGAAAGTTTAAAATCCAATCAACCATAGGATTCAATTTTATGTAATAACCCTTCTAAATAGATTTTAAAATTTTTGTATACTTAACGAACTTGTTAGACATTTTTTAAAAAAAAGAAATAGAGTTCGTTTAAACATAGAAGTGAAATTTCAGAAACTTGTCTAGACAGTTTTTTTATAAAGTTTAGTATATTTAGAAGTATTAAATTTTGATCAAATAATAATGAAAGATGAGCGATGTTGATGTGTTTGATGTGGAACATTTGTAACTAACGGTTCCTTTAATTTGAATGTTTGAAAGAAAAAATAATTTACAAACTACTAATTATTCCATAAAACAAACTTTGAAATAACTCTCTAGGGTGCTAGTTTTTAGAATGTTATTTTAAAACGAAATTGTCTTTTTTTTTTTTTTTTATAAAGCCTATTTTATATAGTAATGTTCCTTTTAATGGTTATTTTGGTGGAGTTGTTGATATAATTTCTTGAATAGATGAACACTTGCCATGAACAAAAGGAATAAATACATTATAACCTTTTAATATTTTGAAATCTGTAGTAGACATGTATTAATCATTATAACACTATAAAAATAGAGTAATTATTTTAAATTACAAAACTACTAAAAAAATATTTTCAAATATAGCAAAATAATAGACTTTGATAGACATCTATCCATATCTATCACTAATAGACATTGATAGATGATAGTAATCTATCCATGTCTATCATTGTTAATTAACGTATTTTGCTATATTTATAAATATTTTAATTTATTTTGTTATATTTAAAATTAACCCATAAAGATATTTTTCAAACATTATTTCACATAAAAATAAATTAATAAATAAATAAGAAGGCAGATTAAAGTTATATTATTGTTGAGACATGGGATGCGAGTTGTATGTGGGGTAATATCATGAAAATTAAAGTGAAAGACAACAAAATTCATGCAAAGCTTTTCTATTATTCAATATAGCTGCTTTTCCCCATGATTAAACATAACCAACAAAAACATACAAAAACATACAGCAATTATTCTAAATATATTATTGTTGAATAATATTGAATCTATTCATTAATAAGATGTCTTCCGTCTCTTTAAACATTAGTTTTAAATCTTTTAATTCGGATGTAATTTCAAAATATTAATTTTGGCTTCTATATTCTTAAAAGAATATTATTTTTTTCTTTTTATTGTCATTTTTATCTGTTTTTGTAATATAAATATTAGCTTGACACTTCATTTACTAAATTTTTGAAAAATATAACGATAAACTTGTATTGAAAAGATTCCAACGTATATAAAGTTTATGCGTTAAATTTTTTGATATGGATGTTTGAAAGTAACATAGTTAAGCTTGAATAACACTTTATGTCTTTGTTATTTATATTCTCAACATATATTTAAGCTTGAATAACACGTTATGTCTCTAGTAGGAGTGATCATCGATCGGTTTAGCGTCGGTTTGAGACAAACCGACGTCGACCACCGACTTGTCGATTTAGATGAGTTGGGAATTGTCGTTTGTGAGAGAGCCTACGAAACTGATCGATCAATGACACAAACGATCGATCGATTTTGATCAATTTTGTTTCATGCATAGTGAAAGATTGCATCAGTCTTAACGTGTTTTTTTAGGTTAAAAGCATATGAGGATAGGAATATAGTTTGGGGGTCTAGAAATTGAGGGATTATATAGAACTTGAACAAATTATAAAATTTTGGAGTTTAAATTATATTTTTGTACTAAAAGTTATATACGTTGAAGTAGAAAACTTATGTATATCTCAGGTTGGCAGACTCCACAGCATACTCCAACAGAGACAGAAGCTGGGGCCAGTGGCTCCAACAGTCCAAATACTTCATAG

mRNA sequence

ATGGCTGATAATAATTTCCCCCTTAATCATCCCCCGCCCTACGCCGGCGACACCACGTGGACCAAACTCTTCGTCGGAGGCTTGGCTTGGGAGACTCAATCCCATGAAATGCACTCTTTTTTCCAACAATTCGGAGATATTCTTGAAGCGGTCATTATTCAAGATAAACACACCGGAAAATCCAAAGGCTACGGATTCGTCACTTTTAAAGATCCTGAATCCGCTAGAAGGGCATGTGCGAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAATTGTAATATCGCCGCCTTCGGCCGTCCTCGTCCTCCGCCCCCGTCGCCGTCTCACGGAGGAAGAAATCAAATTGGGAATCTCCAAAATACAACTCCGGCGGCTGCTGGCTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTCATTTTTCCACAATATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTATTTATAATCCACAACTTCAACAACCACAATTGTACCAGCAATCACCATCTTCAACAGCATCTTCTTCTTCATATTATTATGGCTATGGCTATGGCTATTCTTCTTCATCATCTTCTTCACATCCTCCAAGAGGAGCATTTTCATTACATGGCCATGCCCCTTCACCATTATCATCATCACCATCATCATATTTTCCTTACTATACAAATTACACCCACATGCAACAAGGCTTATTCTACACTCCAATGCACCAGATCATTACTCCAAGTACTGGTTGGCAGACTCCACAGCATACTCCAACAGAGACAGAAGCTGGGGCCAGTGGCTCCAACAGTCCAAATACTTCATAG

Coding sequence (CDS)

ATGGCTGATAATAATTTCCCCCTTAATCATCCCCCGCCCTACGCCGGCGACACCACGTGGACCAAACTCTTCGTCGGAGGCTTGGCTTGGGAGACTCAATCCCATGAAATGCACTCTTTTTTCCAACAATTCGGAGATATTCTTGAAGCGGTCATTATTCAAGATAAACACACCGGAAAATCCAAAGGCTACGGATTCGTCACTTTTAAAGATCCTGAATCCGCTAGAAGGGCATGTGCGAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAATTGTAATATCGCCGCCTTCGGCCGTCCTCGTCCTCCGCCCCCGTCGCCGTCTCACGGAGGAAGAAATCAAATTGGGAATCTCCAAAATACAACTCCGGCGGCTGCTGGCTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTCATTTTTCCACAATATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTATTTATAATCCACAACTTCAACAACCACAATTGTACCAGCAATCACCATCTTCAACAGCATCTTCTTCTTCATATTATTATGGCTATGGCTATGGCTATTCTTCTTCATCATCTTCTTCACATCCTCCAAGAGGAGCATTTTCATTACATGGCCATGCCCCTTCACCATTATCATCATCACCATCATCATATTTTCCTTACTATACAAATTACACCCACATGCAACAAGGCTTATTCTACACTCCAATGCACCAGATCATTACTCCAAGTACTGGTTGGCAGACTCCACAGCATACTCCAACAGAGACAGAAGCTGGGGCCAGTGGCTCCAACAGTCCAAATACTTCATAG

Protein sequence

MADNNFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRPPFPPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQSPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSPLSSSPSSYFPYYTNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNTS

Homology

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BLAST of CcUC08G155180 vs. NCBI nr
Match: XP_038884547.1 (RNA-binding protein 38-like [Benincasa hispida])

HSP 1 Score: 457.6 bits (1176), Expect = 7.7e-125
Identity = 240/282 (85.11%), Postives = 245/282 (86.88%), Query Frame = 0


Query: 1   MADNN-FPLNHP-PPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHT 60
           MADNN F LN P PP+AGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHT
Sbjct: 1   MADNNSFLLNRPAPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHT 60

Query: 61  GKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGN 120
           GKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPS GGRNQ GN
Sbjct: 61  GKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSSGGRNQSGN 120

Query: 121 LQNTT-PAAAGSYGGLRPPFPPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQ 180
           LQ+TT PA AGSYGGLRPPFPPPQLIFPQY               AIYNPQLQQPQ+YQQ
Sbjct: 121 LQSTTPPAVAGSYGGLRPPFPPPQLIFPQYRYRSYAPNYTVPYPQAIYNPQLQQPQMYQQ 180

Query: 181 SPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSPLSSSPSSYFPYYTNYTHM 240
           SPSS+ SSSSYY+GYGY   SSSSSS  PRGAF       SPLSSSP SYFPYYTNYTHM
Sbjct: 181 SPSSSPSSSSYYFGYGY---SSSSSSQHPRGAF-------SPLSSSP-SYFPYYTNYTHM 240

Query: 241 QQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNTS 280
           QQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 QQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNTS 271

[Close]

BLAST of CcUC08G155180 vs. NCBI nr
Match: XP_008444844.1 (PREDICTED: RNA-binding protein 38-like [Cucumis melo])

HSP 1 Score: 456.1 bits (1172), Expect = 2.2e-124
Identity = 238/283 (84.10%), Postives = 245/283 (86.57%), Query Frame = 0


Query: 1   MAD-NNFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60
           MAD NNFPLNHPPP+AGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120

Query: 121 QNTTPAAAGSYGGLRPPFPPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQSP 180
           Q+T+PAAAGSYGGLRPPFPPPQLIFP Y               AIYNPQ+QQPQ+YQQSP
Sbjct: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSPLSSSPSSYFPYYTNYTHMQQ 240
           S + SSSS YY YGYGYSSS SSS  PR AFS+HGH P     SP SYFPYYTNYTHMQQ
Sbjct: 181 SPSPSSSSSYY-YGYGYSSSPSSSQLPRAAFSVHGHPP----QSP-SYFPYYTNYTHMQQ 240

Query: 241 --GLFYTPMHQIITPS-TGWQTPQHTPTETEAGASGSNSPNTS 280
             GLFYTPM QIITPS TGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 QAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 277

[Close]

BLAST of CcUC08G155180 vs. NCBI nr
Match: XP_004152633.3 (RNA-binding protein 38 [Cucumis sativus] >KAE8652132.1 hypothetical protein Csa_022450 [Cucumis sativus])

HSP 1 Score: 451.4 bits (1160), Expect = 5.5e-123
Identity = 236/282 (83.69%), Postives = 242/282 (85.82%), Query Frame = 0


Query: 1   MAD-NNFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60
           MAD NNFPLNHPPP+AGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QNTTPAAAGSYGGLRPPFPPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQSP 180
           Q+T PAAAGSYGGLRPPFPPPQLIFP Y               AIYNPQ+QQPQ+YQQSP
Sbjct: 121 QSTAPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSPLSSSPSSYFPYYTNYTHM-Q 240
           S + SSSS YY Y YGYSSS SSS  PR AFS+HGH P     SP SYFPYYTNYTHM Q
Sbjct: 181 SPSPSSSSSYY-YSYGYSSSPSSSQLPRAAFSVHGHPP----QSP-SYFPYYTNYTHMQQ 240

Query: 241 QGLFYTPMHQIITPS-TGWQTPQHTPTETEAGASGSNSPNTS 280
           QGL YTPM QIITPS TGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 QGLVYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 276

[Close]

BLAST of CcUC08G155180 vs. NCBI nr
Match: XP_023546076.1 (RNA-binding protein 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 354.8 bits (909), Expect = 7.0e-94
Identity = 203/290 (70.00%), Postives = 216/290 (74.48%), Query Frame = 0


Query: 5   NFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGY 64
           NF   HPPP+ GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII DK+TGKSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGY 63

Query: 65  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQNTT 124
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ T 
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TA 123

Query: 125 PAAAGSYGGLRPPF------PPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQ 184
            AAAGSYGGL  P+      PPPQ++FP Y               AIYNPQLQ  QLYQ 
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQP 183

Query: 185 SPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAF--------SLHGHAP-SPLSSSPSSYF 244
           SP     SSSY YGYGYGY SSSS S  PRGAF         +HGH P SPLSSSP SYF
Sbjct: 184 SP----CSSSYGYGYGYGYPSSSSPS--PRGAFPVHGYEHGHVHGHGPSSPLSSSP-SYF 243

Query: 245 PYYTNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 279
           PYYTNYTHMQQ LFY  MHQI TP+TG Q    +PTETE GASGSN+PNT
Sbjct: 244 PYYTNYTHMQQPLFYAHMHQIATPTTGRQ----SPTETEGGASGSNTPNT 280

[Close]

BLAST of CcUC08G155180 vs. NCBI nr
Match: XP_022961976.1 (RNA-binding protein 38-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 353.2 bits (905), Expect = 2.0e-93
Identity = 201/290 (69.31%), Postives = 217/290 (74.83%), Query Frame = 0


Query: 5   NFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGY 64
           NF   HPPP+ GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII+DK+TGKSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGY 63

Query: 65  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQNTT 124
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TT 123

Query: 125 PAAAGSYGGLRPPF------PPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQ 184
            AAAGSYGGL  P+      PPPQ++FP Y               AIYNPQLQ  QLY Q
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQ 183

Query: 185 SPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSL--------HGHAP-SPLSSSPSSYF 244
           SP S++      YGYGYGY SSSS S  PRGAF +        HGH P SPLSSSP SYF
Sbjct: 184 SPCSSS------YGYGYGYPSSSSPS--PRGAFPVHGYGHGHGHGHDPSSPLSSSP-SYF 243

Query: 245 PYYTNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 279
           PYYTNYTHMQQ LFY  MHQI TP+TG Q    +PTETE GASGSN+PNT
Sbjct: 244 PYYTNYTHMQQPLFYAHMHQIATPTTGRQ----SPTETEGGASGSNTPNT 278

[Close]

BLAST of CcUC08G155180 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-26
Identity = 65/118 (55.08%), Postives = 79/118 (66.95%), Query Frame = 0


Query: 16  GDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESA 75
           GDT  TK+FVGGLAW+T    M+  F ++GDILEAVII DK T +SKGYGFVTFKD ++A
Sbjct: 12  GDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAA 71

Query: 76  RRACANPNPIICGRRANCNIAAFG---RPRPPPPSPSHGGRNQIGNLQNTTPAAAGSY 131
            RAC +  PII GRRANCN+A+ G   R  P   SP  G +N  GN    TP   G++
Sbjct: 72  TRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKN--GN--RATPPHVGNH 125

[Close]

BLAST of CcUC08G155180 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.4e-22
Identity = 60/128 (46.88%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 17  DTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESAR 76
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 77  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRP 136
           RAC +PNPII GR+AN N+A  G +PR      + G       +Q   PA      GL P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRSIQTGFTIG-------VQQLHPAFIQRPFGLTP 126

Query: 137 PFPPPQLI 144
            +  PQ I
Sbjct: 127 HYVYPQAI 127

[Close]

BLAST of CcUC08G155180 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 6.3e-21
Identity = 70/186 (37.63%), Postives = 97/186 (52.15%), Query Frame = 0


Query: 17  DTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESAR 76
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 77  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRP 136
           RAC +PNPII GR+AN N+A  G +PR   P  + G + Q+       P    ++     
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQ-QLHPALIQRPFGIPAHYVYPQ 126

Query: 137 PFPPPQLIFP--QYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQSP--SSTASSSSYYYG 196
            F  P ++ P  Q                A Y         Y+Q P  +S A+++ Y   
Sbjct: 127 AFVQPGVVIPHVQPAAAAASTTPYIGYTGAAYAQYSAAAAAYEQYPYAASPAAAAGYVAA 186

Query: 197 YGYGYS 198
            GYGY+
Sbjct: 187 GGYGYA 191

[Close]

BLAST of CcUC08G155180 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-20
Identity = 75/209 (35.89%), Postives = 109/209 (52.15%), Query Frame = 0


Query: 17  DTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESAR 76
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 77  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRP 136
           RAC +PNPII GR+AN N+A  G +PR   P  + G       +Q   PA        RP
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG-------VQQLHPALI-----QRP 126

Query: 137 PFPPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQSPSSTASSSSY--YYGYG 196
              P   ++PQ                A   P +  P +  Q  ++ AS++ Y  Y G  
Sbjct: 127 FGIPAHYVYPQ----------------AFVQPGVVIPHV--QPTAAAASTTPYIDYTGAA 185

Query: 197 YGYSSSSSSSHPPRGAFSLHGHAPSPLSS 223
           Y   S+++++     A+  + +A SP ++
Sbjct: 187 YAQYSAAAAAAAAAAAYDQYPYAASPAAA 185

[Close]

BLAST of CcUC08G155180 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.1e-20
Identity = 74/209 (35.41%), Postives = 109/209 (52.15%), Query Frame = 0


Query: 17  DTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESAR 76
           DTT+TK+FVGGL + T    +  +F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 77  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRP 136
           RAC +PNPII GR+AN N+A  G +PR   P  + G       +Q   PA        RP
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG-------VQQLHPALI-----QRP 126

Query: 137 PFPPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQSPSSTASSSSY--YYGYG 196
              P   ++PQ                A   P +  P +  Q  ++ AS++ Y  Y G  
Sbjct: 127 FGIPAHYVYPQ----------------AFVQPGVVIPHV--QPTAAAASTTPYIDYTGAA 185

Query: 197 YGYSSSSSSSHPPRGAFSLHGHAPSPLSS 223
           Y   S+++++     A+  + +A SP ++
Sbjct: 187 YAQYSAAAAAAAAAAAYDQYPYAASPAAA 185

[Close]

BLAST of CcUC08G155180 vs. ExPASy TrEMBL
Match: A0A1S3BBB0 (RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 1.1e-124
Identity = 238/283 (84.10%), Postives = 245/283 (86.57%), Query Frame = 0


Query: 1   MAD-NNFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60
           MAD NNFPLNHPPP+AGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120

Query: 121 QNTTPAAAGSYGGLRPPFPPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQSP 180
           Q+T+PAAAGSYGGLRPPFPPPQLIFP Y               AIYNPQ+QQPQ+YQQSP
Sbjct: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSPLSSSPSSYFPYYTNYTHMQQ 240
           S + SSSS YY YGYGYSSS SSS  PR AFS+HGH P     SP SYFPYYTNYTHMQQ
Sbjct: 181 SPSPSSSSSYY-YGYGYSSSPSSSQLPRAAFSVHGHPP----QSP-SYFPYYTNYTHMQQ 240

Query: 241 --GLFYTPMHQIITPS-TGWQTPQHTPTETEAGASGSNSPNTS 280
             GLFYTPM QIITPS TGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 QAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 277

[Close]

BLAST of CcUC08G155180 vs. ExPASy TrEMBL
Match: A0A0A0LLP2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.3e-122
Identity = 235/282 (83.33%), Postives = 241/282 (85.46%), Query Frame = 0


Query: 1   MAD-NNFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60
           MAD NNFPLNHPPP+AGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QNTTPAAAGSYGGLRPPFPPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQSP 180
           Q+T PAAAGSYGGLRPPFPPP LIFP Y               AIYNPQ+QQPQ+YQQSP
Sbjct: 121 QSTAPAAAGSYGGLRPPFPPPPLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSPLSSSPSSYFPYYTNYTHM-Q 240
           S + SSSS YY Y YGYSSS SSS  PR AFS+HGH P     SP SYFPYYTNYTHM Q
Sbjct: 181 SPSPSSSSSYY-YSYGYSSSPSSSQLPRAAFSVHGHPP----QSP-SYFPYYTNYTHMQQ 240

Query: 241 QGLFYTPMHQIITPS-TGWQTPQHTPTETEAGASGSNSPNTS 280
           QGL YTPM QIITPS TGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 QGLVYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 276

[Close]

BLAST of CcUC08G155180 vs. ExPASy TrEMBL
Match: A0A6J1HBU2 (RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 9.9e-94
Identity = 201/290 (69.31%), Postives = 217/290 (74.83%), Query Frame = 0


Query: 5   NFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGY 64
           NF   HPPP+ GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII+DK+TGKSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGY 63

Query: 65  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQNTT 124
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TT 123

Query: 125 PAAAGSYGGLRPPF------PPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQ 184
            AAAGSYGGL  P+      PPPQ++FP Y               AIYNPQLQ  QLY Q
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQ 183

Query: 185 SPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSL--------HGHAP-SPLSSSPSSYF 244
           SP S++      YGYGYGY SSSS S  PRGAF +        HGH P SPLSSSP SYF
Sbjct: 184 SPCSSS------YGYGYGYPSSSSPS--PRGAFPVHGYGHGHGHGHDPSSPLSSSP-SYF 243

Query: 245 PYYTNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 279
           PYYTNYTHMQQ LFY  MHQI TP+TG Q    +PTETE GASGSN+PNT
Sbjct: 244 PYYTNYTHMQQPLFYAHMHQIATPTTGRQ----SPTETEGGASGSNTPNT 278

[Close]

BLAST of CcUC08G155180 vs. ExPASy TrEMBL
Match: A0A6J1HBJ1 (RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 4.7e-88
Identity = 195/290 (67.24%), Postives = 211/290 (72.76%), Query Frame = 0


Query: 5   NFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGY 64
           NF   HPPP+ GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII+DK+TGKSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGY 63

Query: 65  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQNTT 124
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TT 123

Query: 125 PAAAGSYGGLRPPF------PPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQ 184
            AAAGSYGGL  P+      PPPQ++FP Y                 Y     Q QLY Q
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPN---------YTLPYHQAQLYPQ 183

Query: 185 SPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSL--------HGHAP-SPLSSSPSSYF 244
           SP S++      YGYGYGY SSSS S  PRGAF +        HGH P SPLSSSP SYF
Sbjct: 184 SPCSSS------YGYGYGYPSSSSPS--PRGAFPVHGYGHGHGHGHDPSSPLSSSP-SYF 243

Query: 245 PYYTNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 279
           PYYTNYTHMQQ LFY  MHQI TP+TG Q    +PTETE GASGSN+PNT
Sbjct: 244 PYYTNYTHMQQPLFYAHMHQIATPTTGRQ----SPTETEGGASGSNTPNT 269

[Close]

BLAST of CcUC08G155180 vs. ExPASy TrEMBL
Match: A0A6J1KAW8 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 1.3e-85
Identity = 191/289 (66.09%), Postives = 207/289 (71.63%), Query Frame = 0


Query: 5   NFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGY 64
           NF   HPPP+ GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII DK+TGKSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGY 63

Query: 65  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQNTT 124
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNL +TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNL-HTT 123

Query: 125 PAAAGSYGGLRPPF-------PPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQ 184
            AAA S+GGL  P+       PPPQ++FP Y                 Y     QPQLYQ
Sbjct: 124 SAAAASFGGLLTPYPPPPSSPPPPQIMFPAYRYRSYAPN---------YTLPYHQPQLYQ 183

Query: 185 QSPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHG------HAP-SPLSSSPSSYFP 244
           QSP S++      YGY YGY SSSS S  PR AF +HG      H P SPLSSSP SYFP
Sbjct: 184 QSPCSSS------YGYAYGYPSSSSQS--PRVAFPVHGYGHGHAHGPSSPLSSSP-SYFP 243

Query: 245 YYTNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 279
           YYTNYTHMQQ LFY  MH I TP TG Q    +PTETE GASGSN+PNT
Sbjct: 244 YYTNYTHMQQPLFYAHMHPIATPITGRQ----SPTETEGGASGSNTPNT 268

[Close]

BLAST of CcUC08G155180 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 186.4 bits (472), Expect = 3.1e-47
Identity = 120/265 (45.28%), Postives = 152/265 (57.36%), Query Frame = 0


Query: 16  GDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESA 75
           GDTT+TK+FVGGLAWET + EM  +F+QFG+ILEAVII DK+TGKSKGYGFVTF++ +SA
Sbjct: 12  GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71

Query: 76  RRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRP 135
            RA A+PNP+I GR+ANCNIA+FGRPRP PP     GR Q G+          +Y G+  
Sbjct: 72  TRAVADPNPVIDGRKANCNIASFGRPRPSPPR----GRGQTGSPSQYQSGGPSTYTGMAA 131

Query: 136 PFPP---PQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQ----------SPSST 195
           P PP   PQL++P Y               A+YN QLQQ Q YQQ          SPSS+
Sbjct: 132 PLPPAAAPQLMYPSY--GYTYNPDQFGYHQALYNTQLQQAQYYQQQQQLYGGGATSPSSS 191

Query: 196 ASS---SSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSPLS---------SSPSSYFPY 255
            ++   S YYYGY         S   PR  +  H H P P +         SSP S+  Y
Sbjct: 192 GATIMPSPYYYGY---------SLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSP-SFLVY 251

[Close]

BLAST of CcUC08G155180 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-46
Identity = 122/274 (44.53%), Postives = 155/274 (56.57%), Query Frame = 0


Query: 16  GDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESA 75
           GDTT+TK+FVGGLAWET + EM  +F+QFG+ILEAVII DK+TGKSKGYGFVTF++ +SA
Sbjct: 12  GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71

Query: 76  RRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRP 135
            RA A+PNP+I GR+ANCNIA+FGRPRP PP     GR Q G+          +Y G+  
Sbjct: 72  TRAVADPNPVIDGRKANCNIASFGRPRPSPPR----GRGQTGSPSQYQSGGPSTYTGMAA 131

Query: 136 PFPP---PQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQ----------SPSST 195
           P PP   PQL++P Y               A+YN QLQQ Q YQQ          SPSS+
Sbjct: 132 PLPPAAAPQLMYPSY--GYTYNPDQFGYHQALYNTQLQQAQYYQQQQQLYGGGATSPSSS 191

Query: 196 ASS---SSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSPLS---------SSPSSYFPY 255
            ++   S YYYGY         S   PR  +  H H P P +         SSP S+  Y
Sbjct: 192 GATIMPSPYYYGY---------SLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSP-SFLVY 251

Query: 256 YTNYTHMQQGLFYTPMHQIITPSTGWQ-TPQHTP 264
            +N +      F  P+  +++ ST  +  PQ  P
Sbjct: 252 PSNSS------FAPPLQGVLSSSTESEAVPQQVP 263

[Close]

BLAST of CcUC08G155180 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 159.5 bits (402), Expect = 4.0e-39
Identity = 114/265 (43.02%), Postives = 141/265 (53.21%), Query Frame = 0


Query: 16  GDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESA 75
           GDTT TK+FVGGLAWET + EM  +F QFG+ILEAVII DK TGKSKGYGFVTF+D +SA
Sbjct: 12  GDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSA 71

Query: 76  RRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRP 135
            RA A+PNP+I GR+ANCNIA+FGRPRP  P     GR Q G+          SY G+  
Sbjct: 72  TRAVADPNPVIDGRKANCNIASFGRPRPSTPR----GRGQGGSPSQYQGGGQSSYTGMAA 131

Query: 136 PF---PPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQSPSSTASSSSYYYGY 195
           P       QL++P Y               A+YN QLQQ Q YQQ            YG 
Sbjct: 132 PVQQAAAAQLMYPSY---GYTYNSEYGYHQALYNAQLQQAQYYQQQ----------MYG- 191

Query: 196 GYGYSSSSSSSHPPRGAFSLHGHAPSPLSSSPSSY-FPYYTNYTHMQQGLFYTPMHQIIT 255
           G G +S SSS+  P   + L   +P P       Y + ++      QQ    +    +I 
Sbjct: 192 GGGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSYLIY 251

Query: 256 PS-TGWQTPQHTPTETEAGASGSNS 276
           PS     TP + PT     +S + S
Sbjct: 252 PSNVEAPTPSNVPTSQGPLSSSTES 258

[Close]

BLAST of CcUC08G155180 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 156.4 bits (394), Expect = 3.4e-38
Identity = 101/233 (43.35%), Postives = 132/233 (56.65%), Query Frame = 0


Query: 16  GDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESA 75
           GDTT+TK+FVGGLAWETQS  +   F+Q+G+ILEAV+I DK+TG+SKGYGFVTF+DPE+A
Sbjct: 19  GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78

Query: 76  RRACANPNPIICGRRANCNIAAFGRPRPPPP---SPSHGGRNQ-----IGNLQNTTPAAA 135
           RRACA+P PII GRRANCN+A+ GRPRPP P    P+  GR +     IGN+Q    +  
Sbjct: 79  RRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQGPRGSLI 138

Query: 136 GSYGGLRP-PFPPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQSPSSTASSS 195
           G+Y   +P P+   Q +   Y                +Y+P + Q  L         +S 
Sbjct: 139 GNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMGQQYLQVYGVPGAVNSP 198

Query: 196 SYYYGY-------GYGYSSSSSSSHPPRGAFSLHGHAPSPL--SSSPSSYFPY 231
            Y YG        G+GY++    S P      L G   S +  SS P+   PY
Sbjct: 199 VYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQLGGPTVSTMTTSSMPALQAPY 251

[Close]

BLAST of CcUC08G155180 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-36
Identity = 105/256 (41.02%), Postives = 136/256 (53.12%), Query Frame = 0


Query: 16  GDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESA 75
           GDTT+TK+FVGGLAWETQS  +   F Q+GDILEAV+I DK+TG+SKGYGFVTF+DPE+A
Sbjct: 19  GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78

Query: 76  RRACANPNPIICGRRANCNIAAFGRPRPP--------------PPSPSHGGRNQIGNLQN 135
           RRAC +P PII GRRANCN+A+ GR RPP              PPSP       +G++Q+
Sbjct: 79  RRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSP------YVGSVQS 138

Query: 136 TTPAAAGSYGGLRPP-FPPPQLIFPQYXXXXXXXXXXXXXXXAIYNPQLQQPQLYQQSPS 195
                 GS+   +PP +   Q +   Y                 Y P + Q  L      
Sbjct: 139 PRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQYLQVYGVP 198

Query: 196 STASSSSYYYGY-------GYGYSSSSSSSHPPRGAFSLHGHAPSPLSSSPSSYFPYYTN 250
              +S  Y YG         +GY++    SHP  G+  L   A SP+S+  S Y P  + 
Sbjct: 199 GAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHP--GSHVLQLGATSPMSAIQSPY-PSPSA 258

The following BLAST results are available for this feature:

BLAST of CcUC08G155180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884547.1	7.7e-125	85.11	RNA-binding protein 38-like [Benincasa hispida]	[more]
XP_008444844.1	2.2e-124	84.10	PREDICTED: RNA-binding protein 38-like [Cucumis melo]	[more]
XP_004152633.3	5.5e-123	83.69	RNA-binding protein 38 [Cucumis sativus] >KAE8652132.1 hypothetical protein Csa_...	[more]
XP_023546076.1	7.0e-94	70.00	RNA-binding protein 38-like [Cucurbita pepo subsp. pepo]	[more]
XP_022961976.1	2.0e-93	69.31	RNA-binding protein 38-like isoform X1 [Cucurbita moschata]	[more]

BLAST of CcUC08G155180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	2.9e-26	55.08	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q5ZJX4	7.4e-22	46.88	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q5ZMA3	6.3e-21	37.63	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]
D3Z4I3	1.4e-20	35.89	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]
Q9BX46	4.1e-20	35.41	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]

BLAST of CcUC08G155180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBB0	1.1e-124	84.10	RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1	[more]
A0A0A0LLP2	1.3e-122	83.33	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV...	[more]
A0A6J1HBU2	9.9e-94	69.31	RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1HBJ1	4.7e-88	67.24	RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KAW8	1.3e-85	66.09	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=...	[more]

BLAST of CcUC08G155180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.2	3.1e-47	45.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.1	1.2e-46	44.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	4.0e-39	43.02	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	3.4e-38	43.35	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.4e-36	41.02	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 22..94 e-value: 2.0E-23 score: 93.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 23..81 e-value: 6.2E-17 score: 61.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 21..98 score: 16.056692
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 7..115 e-value: 2.1E-24 score: 88.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..144
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 16..266
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 21..96 e-value: 2.53453E-40 score: 132.739
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 16..266
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 11..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G155180.1	CcUC08G155180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding