CcUC08G154590 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G154590
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 22927461 .. 22927933 (-)
RNA-Seq ExpressionCcUC08G154590
SyntenyCcUC08G154590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGGAGTAGGTTCAGATTACTATACCATCATCAAAGGCCTCGTCTTTTCAAAATACTTACAACCGTACACCCAAAAGGCAATTCGATTCTACATTGCAAAGCCCGAAGAAGATTCATTATTATCATCAATCAGATACAATGTTCATCAAGAAACGGAGATGCAAACCAGTTTTTGATGATCTTTCTTTCTGTAAGTACAGTTTATAATAACTTATATGAACAAGCATCTCTGGTTGGTCCACTCGGCTACGCCAGTAATAGGTCTGAAATTGAACTGCACCAGCTACGTATGCAGAAGGACAGAGTAAGAGAAGAGTAAGAGAGAGAGACTCTATGTGCCCTAAATCGCACAAACAGGCATTGTGGAAATTTGGGGGTCCGGGAGATGAGGGATCATTGATCATGTGACAGCACCACGAGGCCGGCCGGCAGTCGCCTTAAGACACGCGTTTGTGCGCGCGCACCAAGT

mRNA sequence

ATGAACGGAATACAATGTTCATCAAGAAACGGAGATGCAAACCAGTTTTTGATGATCTTTCTTTCTGTAATTTATAATAACTTATATGAACAAGCATCTCTGGTTGGTCCACTCGGCTACGCCAGTAATAGGTCTGAAATTGAACTGCACCAGCTACAAGGACAGAGTAAGAGAAGAGTAAGAGAGAGAGACTCTATGTGCCCTAAATCGCACAAACAGGCATTGTGGAAATTTGGGGGTCCGGGAGATGAGGGATCATTGATCATCACCACGAGGCCGGCCGGCAGTCGCCTTAAGACACGCGTTTGTGCGCGCGCACCAAGT

Coding sequence (CDS)

ATGAACGGAATACAATGTTCATCAAGAAACGGAGATGCAAACCAGTTTTTGATGATCTTTCTTTCTGTAATTTATAATAACTTATATGAACAAGCATCTCTGGTTGGTCCACTCGGCTACGCCAGTAATAGGTCTGAAATTGAACTGCACCAGCTACAAGGACAGAGTAAGAGAAGAGTAAGAGAGAGAGACTCTATGTGCCCTAAATCGCACAAACAGGCATTGTGGAAATTTGGGGGTCCGGGAGATGAGGGATCATTGATCATCACCACGAGGCCGGCCGGCAGTCGCCTTAAGACACGCGTTTGTGCGCGCGCACCAAGT

Protein sequence

MNGIQCSSRNGDANQFLMIFLSVIYNNLYEQASLVGPLGYASNRSEIELHQLQGQSKRRVRERDSMCPKSHKQALWKFGGPGDEGSLIITTRPAGSRLKTRVCARAPS
Homology
[Close]
BLAST of CcUC08G154590 vs. NCBI nr
Match: KGN47670.1 (hypothetical protein Csa_018248 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 7.6e-04
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 28  LYEQASLVGPLGYASNRSEIEL--HQLQGQSKR-RVRERDSMCPKSHKQAL 76
           LY QASLV PLGYA+N  EIEL    ++ Q  R R RERD +CP+SHKQAL
Sbjct: 77  LYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCPESHKQAL 127

[Close]
BLAST of CcUC08G154590 vs. ExPASy TrEMBL
Match: A0A0A0KD93 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367160 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.7e-04
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 28  LYEQASLVGPLGYASNRSEIEL--HQLQGQSKR-RVRERDSMCPKSHKQAL 76
           LY QASLV PLGYA+N  EIEL    ++ Q  R R RERD +CP+SHKQAL
Sbjct: 77  LYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCPESHKQAL 127

The following BLAST results are available for this feature:
BLAST of CcUC08G154590 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47670.17.6e-0462.75hypothetical protein Csa_018248 [Cucumis sativus][more]
BLAST of CcUC08G154590 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC08G154590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD933.7e-0462.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367160 PE=4 SV=1[more]
BLAST of CcUC08G154590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G154590.1CcUC08G154590.1mRNA