CcUC08G153930 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G153930
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionPGG domain-containing protein
LocationCicolChr08: 22378872 .. 22379510 (+)
RNA-Seq ExpressionCcUC08G153930
SyntenyCcUC08G153930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGTTAGAGAAGAGACAAAAAAGAGTTGGGTGAAAGGAGATACAGATTTTATAATGGGGAGCTATCTTTCAATCTGTAATCTAAATTATTCTCTCCAAACACACACTACTTACTGAAGCACATGTAAATTTCTTTGTCGATTCTTTATTTGATTATGTTTGTGTGCTTACCTATATTTGTCAATTTCCATGACAGATAATGGTAACGTTCATTGCAGCCGTGGCTTTCCAAGTAGAGACCGAATGTATGACAAGAGGACAAGACAAAGGACAACCCGAACTATATAGTAGGGAAATCAATAATGGCTACAAAATCACCTGCTGAATACAAAAAGTTCATGGTGGCAGTGACGGTGTGTCTTGGCCTTTTCAGGGATCCAGTTAATAGTGTTGTTGTTCAAGTTGGTATTTCAAAATTAGTTGGTTGGTCAGGAGGGTCATTATGTACATGATGATGTTAGTTACAATAAGGGCAATGGTTGTTGCCTTTTGGTCTTCTCTAAGAGCTTTGACACCTGATTCAGAGATGAAAGAGATCACTGCTGGCTTCTGGACAATTATGGGAGTCTCTATGCTTGAGATCCCCATTGTTCTACTCTACTACTTAAGCAATAAGTTTTTTCTATCTTCATGA

mRNA sequence

ATGGAAAAGAGGGTCATTATGTACATGATGATGTTAGTTACAATAAGGGCAATGGTTGTTGCCTTTTGGTCTTCTCTAAGAGCTTTGACACCTGATTCAGAGATGAAAGAGATCACTGCTGGCTTCTGGACAATTATGGGAGTCTCTATGCTTGAGATCCCCATTGTTCTACTCTACTACTTAAGCAATAAGTTTTTTCTATCTTCATGA

Coding sequence (CDS)

ATGGAAAAGAGGGTCATTATGTACATGATGATGTTAGTTACAATAAGGGCAATGGTTGTTGCCTTTTGGTCTTCTCTAAGAGCTTTGACACCTGATTCAGAGATGAAAGAGATCACTGCTGGCTTCTGGACAATTATGGGAGTCTCTATGCTTGAGATCCCCATTGTTCTACTCTACTACTTAAGCAATAAGTTTTTTCTATCTTCATGA

Protein sequence

MEKRVIMYMMMLVTIRAMVVAFWSSLRALTPDSEMKEITAGFWTIMGVSMLEIPIVLLYYLSNKFFLSS
Homology
[Close]
BLAST of CcUC08G153930 vs. NCBI nr
Match: XP_038884181.1 (uncharacterized protein LOC120075089 [Benincasa hispida])

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 0 

Query: 3   KRVIMYMMMLVTIRAMVVAFWSSLRALTPDSEMKEITAGFWTIMGVSMLEIPIVLLYYLS 62
           +R I+YM+ML+TI  MVVAFWSSL ALTP   M EI AGFW+++GVS++ +P VLLYYL+
Sbjct: 124 RRAILYMLMLLTITPMVVAFWSSLLALTPADLMTEIKAGFWSVIGVSLIVLPFVLLYYLT 183

Query: 63  NK 65
            K
Sbjct: 184 KK 185

[Close]
BLAST of CcUC08G153930 vs. NCBI nr
Match: XP_004144204.1 (uncharacterized protein LOC101208403 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-09
Identity = 35/64 (54.69%), Postives = 51/64 (79.69%), Query Frame = 0 

Query: 3   KRVIMYMMMLVTIRAMVVAFWSSLRALTPDSE-MKEITAGFWTIMGVSMLEIPIVLLYYL 62
           +R+IMY++ML TI  M+V+FW+S++ALTPD + M EITA  W+I+GV ++ +PI+LLYYL
Sbjct: 120 RRMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYL 179

Query: 63  SNKF 66
              F
Sbjct: 180 VKTF 183

[Close]
BLAST of CcUC08G153930 vs. NCBI nr
Match: KAE8647228.1 (hypothetical protein Csa_018955 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-09
Identity = 35/64 (54.69%), Postives = 51/64 (79.69%), Query Frame = 0 

Query: 3   KRVIMYMMMLVTIRAMVVAFWSSLRALTPDSE-MKEITAGFWTIMGVSMLEIPIVLLYYL 62
           +R+IMY++ML TI  M+V+FW+S++ALTPD + M EITA  W+I+GV ++ +PI+LLYYL
Sbjct: 306 RRMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYL 365

Query: 63  SNKF 66
              F
Sbjct: 366 VKTF 369

[Close]
BLAST of CcUC08G153930 vs. NCBI nr
Match: XP_008445521.1 (PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-08
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 3   KRVIMYMMMLVTIRAMVVAFWSSLRALTPDSE-MKEITAGFWTIMGVSMLEIPIVLLYYL 62
           +R+IMY++M+ TI  M+ +FW+S++ALTPD + M EITA  W+  GV ++ +P++LLYYL
Sbjct: 120 RRMIMYLLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYL 179

Query: 63  SNKF 66
             KF
Sbjct: 180 LKKF 183

[Close]
BLAST of CcUC08G153930 vs. ExPASy TrEMBL
Match: A0A0A0KIL3 (PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363520 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 35/64 (54.69%), Postives = 51/64 (79.69%), Query Frame = 0 

Query: 3   KRVIMYMMMLVTIRAMVVAFWSSLRALTPDSE-MKEITAGFWTIMGVSMLEIPIVLLYYL 62
           +R+IMY++ML TI  M+V+FW+S++ALTPD + M EITA  W+I+GV ++ +PI+LLYYL
Sbjct: 120 RRMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYL 179

Query: 63  SNKF 66
              F
Sbjct: 180 VKTF 183

[Close]
BLAST of CcUC08G153930 vs. ExPASy TrEMBL
Match: A0A1S3BCY4 (uncharacterized protein LOC103488512 OS=Cucumis melo OX=3656 GN=LOC103488512 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 3   KRVIMYMMMLVTIRAMVVAFWSSLRALTPDSE-MKEITAGFWTIMGVSMLEIPIVLLYYL 62
           +R+IMY++M+ TI  M+ +FW+S++ALTPD + M EITA  W+  GV ++ +P++LLYYL
Sbjct: 120 RRMIMYLLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYL 179

Query: 63  SNKF 66
             KF
Sbjct: 180 LKKF 183

The following BLAST results are available for this feature:
BLAST of CcUC08G153930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038884181.11.8e-1162.90uncharacterized protein LOC120075089 [Benincasa hispida][more]
XP_004144204.12.2e-0954.69uncharacterized protein LOC101208403 [Cucumis sativus][more]
KAE8647228.12.2e-0954.69hypothetical protein Csa_018955 [Cucumis sativus][more]
XP_008445521.13.2e-0850.00PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo][more]
BLAST of CcUC08G153930 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC08G153930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIL31.1e-0954.69PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363520 PE=4 SV... [more]
A0A1S3BCY41.6e-0850.00uncharacterized protein LOC103488512 OS=Cucumis melo OX=3656 GN=LOC103488512 PE=... [more]
BLAST of CcUC08G153930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G153930.1CcUC08G153930.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane