CcUC08G151950 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G151950
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 20221508 .. 20225533 (-)
RNA-Seq ExpressionCcUC08G151950
SyntenyCcUC08G151950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTTTCTCTTTGGATTATATTACCTAGGCATATGAACAATAAAGAATAAAATTCAGAAATAAATACCATATATTGTAGATTTTCTCTTGAAGATTACAAATATTGCACATATAAATATCCTTAAGTTTAAGAACATTTTTTGCATGTGTAGAGAGTTAGAGAAGTAAGAACAAGCAAACGCTGAGAAACTATACAGCAGGTAAAAGCAAAATTTTCAATATTGTATACGAATTTTTTTTTTTCCAGAAAACCTGGGCTGTGAAGCGGGGAAGCATGAGCTTCAATATTTGTTCAAGGACTTGGGTCCCAGCTGATTCAATTGCTTGTACAGGAATTGCACGGAAGGCGAAAGGAATTTCAATGTTAACCTGGATTTCCCAGAATAAGACAATTATATTTTGTTCTTGGACAATGCACACATATTTTCTAGTGCCAATGTTGTTGAATAAAATTGCCATTACCTCGATGACAGTATCCGATGTGAGCTTCTGCAAGGGTGAGTTGCCTCGATTCACATCATAAGATATCTGGTTCACCATATAAGCTGCATTCCGACACCAAATCAATGTCAAAGCAGTCCTGAAAAAAGCATGAACCAAAAACTCAACATGATGAATGGCTGCTCTTCCAGCAAAACAACTCAGAAGTCATGGAGAGCAGCAATACTATAAGGATGCAACCTAAGGCCAAAATCTAAAAACATTCAGTAATTCTTGCTTTCCTATACCGGGTGCTAATTACTGGAATAGGCCGAGAAAGTTGCTCTCCAATTGGCCGTTCGGGCAAGTGGCAATATCAAACTAGTCAAAATCCTCCAGAAAACGGGGAAAAGTTCTTTATGTAGAAGTAGGATGGAGTTATGAACTTATGCAAACAAAAGTTCCATATTCAATAAACAGTTTAATAACTCTAATAATTCTTTATTCTAGCAGACTACCACTTATTTTCTGTGTAGTAAACCAAGAAATGACAACAAATTCTTCTTACAAGTTACAACACATCTGAGAAAATGACAACAAATTCTTCTTACAAATTACAACACATCTGAGAAAATGACAACAAATTCTCTATTGAAATTGAATTAATGGTTATTACACGTTATGATATAGGGAAAGTGAGAAAAGACTAAGAGCAATGGACCTTGGGCACAAAATCCTTCAATTTTTCATTTCGAAATTCACCTCATACATATTTTACAACAAAGAGAAAACCGTAGGAAATTTGAAGGCAGCAAATAACTCATCATTCAGTTGCTTCCTCGGACACAAAAAACATGCGGAAAGCAAGGAGAATAAGAACATGTTTGGAAGCGATTTTATTTAAAGTCACTTCTATCATGTTCAAAATCAATCCAAAACATGCACTTAACTGTTCAAAATCATTTTCGTGTTTGATTTTTACACATTTTAACGGGATTTTGTATCAAAGTGACTTTAAACCTGACAAAAATGATTCTAAACTGTTTTAAAATCACTCCCAAACGGCAAACATGCCTTAATCCATTTGGTACGAGTGTTTGATGTTTCTATACATTAGTTATGCTTATGCATAATTCAGATTCTCACCATCAAATTTATCATTCTGTGCAACCACGATTGGGGAGCCCTCAAGCTGTGCATTTAAACATGTAAAAAATAAGAACATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAACAAGAAGTAAACTGAGCATTCAACATTCCACAAAACAAGATAAGGCAAATTAATCCAGACCTTACACGACAGCAGCTTGATACAACACCCATTAGGCTGCACTTCAACTCTAACAATCAAAACAGGGCAAACCTCAAACGCAAAGAATTTAAATCTATAAACATAACACCTAAAGGTGCAGTCATCAATCCGCTCAATCCTCTCCGCATCCAACACCGAGTATTGACTAGCCGGCAAACTCATATACTCATCTGCATCATCCAAACACAAAATCCCTCAAAATCAAAAACCCAAAAAAACACACATTACATGCAATCAAAAGTTCATCACATAATCCAAAACCCCTTCTAACATTACTTAGAGGCCGCGCCAACTGCCGAACCGTGACGGACTCACTCCTCCGGGCGACGAAACGCGCTTTTGGATTGGAATTCGTGGAGATCCGAAGCGAAGGCCTGGGAGAATCGTCTGCAGAGGAAGCAAGTATAAGGAATGGTCTGTGGGTGAGAGAAAAAGAAGCTCTAGGGTTTTTGCAGTGGAGGGAAATGGAAGACGGAGAGCAAAAACTCAACGCCATTAACGCGTTTGAGAATTTTGCAGAGAGGAATTGGATTATTGGAAGGGATATTGATGTTTGAGGCTTTCGGTGAAGGAAGTAATCAAGCAAAGATGGGGTGTGAGAGATGGATAAGACAATGGTAAATGAAACAACCCATTTTTTCAGCCATTGCATTGCTGTTATAAGTATAGCCATTATTTATTTTATTTACAAAAAATACTTTTACTAAATTCTCCAATTACAATTTGATATACTATGAATTCTTTTTATTTTTTAATTTTTATTTTTTTAAATATTTAAATTATTTTTCTCTACGTGGAATGAGGGTGAGATGCATAAAAATGGGTGACGAACAATGCACCTAAATATTTCTACGTTTTTTAATATACAACCCGCAATTGTAATAAGGTGGATTCATATCTTCTTATTGTGTTTGATTATATTCAAAAGTAAACATGCGTGGATATAAAAATTGTAGCGATGGATATCGGATCTCCCACCTCTAGGATGAAAGTCATAGTATTTTATTCACTTATTAAATTTGTTTGTCCATCTACCAAGAAGTTAGAAAAGAGTTTATAGATGTAATATTTGCTAGTAATTGCTTAATTATGTTTACTATAACCACGAGCTATATATAAATTAAAGTAGGATAATTTAACATGACACTAAGTTTAGAGAACTCTACTACAACGTAACGTGAACATTTAATATAAATATGCATCATGCATGCATAAATAACCCGAACACTACACACATCTATTCTATATATTCTATTCGACTCAGCCTCGCCAGCTCCGACTTCCAATGGAAGCCGTCAATGGCGGCGCCACCGCCTTTATTCGTATTTCTTCTTCAATTCGACGCCAAATGCAAGTAACTATTGTTATTGGTAATGCAATTAACTGCTTATTTCTATCCAACATTTGCTTTCATGGCGTAATTTCTTCCCATCCTCCGCGTCCGGATCCGTATCCCGACCCGTACCCCGAACCAAATCCAGAGCCACTCCTGGTAGAACCTCCGCCGCCGCCTCCTCCTCCTCCTTCTCCACCGCCTCCTTTGCCGCTCCCACTGCCATATCCGCCTCCGATGCCGTATCCCGAGCCATAGCCTGATCCATTTCCGCCTCCGGAACCTCCACCTCCCCCTCCTCCTCTGCCCCCACCGCCTCCGCCTCCGTCGCCTCTTCCAAACCCGGAACCGCTTCCTGATCCGAATCCAGACCCGAATCCGGATCCAGACCCTGTTCCGCCCCCACCTCCACCACCGCTTCCTCCGCCACCGCCACTGCCTCTGCCGAACGCTCTGTCGCCTTCTCCCTCACCGTATCCTTGGCCTCCGCCAGAACCAAAACCAGAACCGTAA

mRNA sequence

ATGAAAGGCCGCGCCAACTGCCGAACCGTGACGGACTCACTCCTCCGGGCGACGAAACGCGCTTTTGGATTGGAATTCGTGGAGATCCGAAGCGAAGGCCTGGGAGAATCGTCTGCAGAGGAAGCAAGTATAAGGAATGGTCTGTGGGTGAGAGAAAAAGAAGCTCTAGGGTTTTTGCAGTGGAGGGAAATGGAAGACGGAGAGCAAAAACTCAACGCCATTAACGCGTTTGAGAATTTTGCAGAGAGGAATTGGATTATTGGAAGGGATATTGATCCTCGCCAGCTCCGACTTCCAATGGAAGCCGTCAATGGCGGCGCCACCGCCTTTATTCGTATTTCTTCTTCAATTCGACGCCAAATGCAACCTGATCCATTTCCGCCTCCGGAACCTCCACCTCCCCCTCCTCCTCTGCCCCCACCGCCTCCGCCTCCGTCGCCTCTTCCAAACCCGGAACCGCTTCCTGATCCGAATCCAGACCCGAATCCGGATCCAGACCCTGTTCCGCCCCCACCTCCACCACCGCTTCCTCCGCCACCGCCACTGCCTCTGCCGAACGCTCTGTCGCCTTCTCCCTCACCGTATCCTTGGCCTCCGCCAGAACCAAAACCAGAACCGTAA

Coding sequence (CDS)

ATGAAAGGCCGCGCCAACTGCCGAACCGTGACGGACTCACTCCTCCGGGCGACGAAACGCGCTTTTGGATTGGAATTCGTGGAGATCCGAAGCGAAGGCCTGGGAGAATCGTCTGCAGAGGAAGCAAGTATAAGGAATGGTCTGTGGGTGAGAGAAAAAGAAGCTCTAGGGTTTTTGCAGTGGAGGGAAATGGAAGACGGAGAGCAAAAACTCAACGCCATTAACGCGTTTGAGAATTTTGCAGAGAGGAATTGGATTATTGGAAGGGATATTGATCCTCGCCAGCTCCGACTTCCAATGGAAGCCGTCAATGGCGGCGCCACCGCCTTTATTCGTATTTCTTCTTCAATTCGACGCCAAATGCAACCTGATCCATTTCCGCCTCCGGAACCTCCACCTCCCCCTCCTCCTCTGCCCCCACCGCCTCCGCCTCCGTCGCCTCTTCCAAACCCGGAACCGCTTCCTGATCCGAATCCAGACCCGAATCCGGATCCAGACCCTGTTCCGCCCCCACCTCCACCACCGCTTCCTCCGCCACCGCCACTGCCTCTGCCGAACGCTCTGTCGCCTTCTCCCTCACCGTATCCTTGGCCTCCGCCAGAACCAAAACCAGAACCGTAA

Protein sequence

MKGRANCRTVTDSLLRATKRAFGLEFVEIRSEGLGESSAEEASIRNGLWVREKEALGFLQWREMEDGEQKLNAINAFENFAERNWIIGRDIDPRQLRLPMEAVNGGATAFIRISSSIRRQMQPDPFPPPEPPPPPPPLPPPPPPPSPLPNPEPLPDPNPDPNPDPDPVPPPPPPPLPPPPPLPLPNALSPSPSPYPWPPPEPKPEP
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 159..175
score: 44.71
coord: 133..154
score: 43.64
coord: 120..132
score: 38.46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G151950.1CcUC08G151950.1mRNA