CcUC08G151220 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G151220
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DEAD-box ATP-dependent RNA helicase 39-like
Location	CicolChr08: 19455596 .. 19459755 (+)
RNA-Seq Expression	CcUC08G151220
Synteny	CcUC08G151220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATTTTGGGAAGTAGGAACCTAGCAATTGAATCCTAGTCCGGAGCAGGTCAAACCTCCGAACAGCACCGCCATGGGAAGTAGAAGAAAAGCTCTTCTCGAGCTCTCTCACTACGCAAACAGTCTCTTATGTCCAACCAAACGTTCTACTTTCCCCAACCCCACGCTCTCCACGAACGCTTTTTTAGCTTCTCGATTTTGTTCCTCTTCCTTTTCCAGAACCTCCACCGATGGCACCGCCATGGAAAATGATCAACCGCCGCAATCGAACAGAGATGCATTGCTTCTTGAGAAGTTCAGGCTCAGAAAACTCCAAGGCTCGTCAAAAATCTCGCAAGAATCATCGAGTTCTAATGGAGGTGAGAAGGTGATGACAGGTTTCAAGGAGTTGGGGCTTTGCAATGAATTGGCCGAGGCTGTAGAAGAAATGGGGATTTTTGCTCCTTCTGAGTTGCATTGTGTAGGGATTCCGGCTCTTTTGGAAAAAAAGAATGTGGTGTTGGGATCTCTTTATGGACCCGAAAGGGCTTTGGCTTACTTGCTGCCTCTCATTCAGGTTCTTATTTCTTTTAACCATTTGAATATAGCAATCCTTTGGCACTTTCTTTAGCAGAATCGATGATGGCTTTGAGTTCGTAGTACCAATCAGAACTGTATCTGATGTAGATGTCTGTCATTTTATTATCCGGCTATTTCTGGATTAGAATTAGAATGACCTTTGGGTTCCTCTTTTAGGAATGTTGATTGTGGCCGTTTGTCAAACCAATTCTTTAAAGTAGCCTCAAAGTGGTAGGTTATGTTAGTCTTTCGATGCAGGTTAAATTGCAAATTTAGTCTATTAGGGACGTATTGGCTCGACTTCAATGGGGTGGGGTGGGCTATTATAGCTCAAGTCTTCCGACTATAAAGTAGCATGCACTGCAAACACAAATACAAATTACAAACTATAATAACCAACTTTGCCTCCAAATGCTCCTTTAATATTATGGTTTATATCTATTTCGTCTCTCAACTTTCAAAATTCTAAATTGAATCCTCCAACTTTCAAAACTACACACTTAATTCATGAACTTTAAAGTTTAGGTTCCATTAGACATGGAATTCAATTTTATATCTAATATATTTTTTAAAAGATCAAAATTGTTGGGATTTATTAATTAAAAACTTGAAAGTTAAAGGATCTATTAGACACAAAATTGAAAGCTCAAGAACCTACTACATATTCTTTGAAAGTTCAAGGACCTACTAGCCACTTTTGAAAGTTCAATGACCACTTTTGAAAGTTCAATGACCAAATAAATATAAACCTCAATGTTTAGGGACTAAACTTATAATTTAACTTTAGTAGGTTTGATATATCTTCAAACCATCCACTTGAATTATGTGTGATTGAACATTAATATGATTAATGAGACTCCATACATAGAATGATGGAATATTAATATGAATATGGCAGAAATTACATTGGGAAGTTTGAACTTTTTGTTAATTCAACCATGGGTGGGGAGTCTTAATTTTTAACTACAATTTTTAGTCAAATTGTGATGCTTTAACCTGTTGAGTTATCCTTGTGTTGGTAGGAAGTTTGAACTTTGTGCCTAATGTGGTCGCATGTTAAATTTACACTAAACCCTTTTGCTTTTAAGTTAATAAGATAGGATAAATATATTCTTTTAGTTTGCTCGTTATTTTCATTCGAATTGTGAAATTGTCTATCGTGCTCAGTCTACTCTTATTTATTTCTAGAGATTTGCAGTCTCCTCTCGACACCTCTTAATTGATATACTTTTAGAGTAGTTTGATTTTCCATCTAGATATCAAGAAAGTACAATACTAAAATGCGTCTTCACTGTCATGTTTTTTTTTCCCCATTGTTGTGTTTCTACAATTTGCTCTTCTTAGAATCTAAAAAGGGATGGAAAGATATATGGAACAAGGTCCAAGCATCCTCGAGCTTTTGTTCTGTGCTCGACCGTGCAGCTATCTGAAGAGGTAATCACTTTCTAAGACCTTCATGAGTAAGATTTTAAGACCAACTACAATTTGGCTGACATAGGATGAACTCTGCAGGTGTTTTATATGGCCAGGTTCATCAGCGAATACAGGCAGCTTGAAACTGCAAGGGATAATGGCTGTGGTGAATTACAACTTCAGAAAAGTGCATCTGATGTCTCGATCGGTTTGTTAATTGGCACCCCTGCTGAGGTCTCCAAACTCATTGAAGAGGGGAGGGTGGTTCCTGATGAAATCAAATACTTGGTGTGTGGTGAACTATTCATACTACATCTTTCTTTAAAGATAAAATTTTATTTGACATTTTTCTTGCACGGTAATTGGTATTGATATAATGTAATTCTTAGTTTCTTTTTCTCAAAAAATCTGTTCCTTGCTCTGTTTAGGCCGAGATGGTATACCATTTATCTTTCCTTCCATTTACAACCATAATGTTGAAAGACAAAAGAGTATGGTGGCCTTTATGTTTGTTTTATGCTTGTGTGTTTTTTTAATCAAGCAGTTTAGAGTGATGGTTTATAGCCTACATCAAGTCAAAAACTGATTGATGGATTGGCCCTTGTTATTTTTTAATCCCTGCTATGTTTATCTCTAAGACAAGAAATTACATGTGTATCAGAGTTCATAATCTTACAAAACCGTCAAGATTGTGATTCTTTTTTATATATAATGTCGTTTTAATTTTCTTGTGAAACAGGTATTGGATGAGTTGGATTCGATGTTCGGTCTTGGTTTTGGCCCCGACATTAAAAAGATTTTAACTTCAGTAAGACCCTGCAATGAAAAGTGTCAATCCATTGTACTTACTTCGACATTGATTAAGGTTATTTGTTCTACTCTGTCTCTTACCTGACTTAAGACTTTTTGTGCATATAGGTTCTCAACTTTTTCTTCGAGTTAACAAATTGTTTTGTAAATTATAGATGTTGCATGAACAACATTCATCCCTTGTAGAGTCTCTTAAGCGTGGTGATGCGGGAGAGGTTACTGCTATGCTTCTAGAAATTGAGGAAGAAGAGGCATTCCATCTTATGGAATCTCCCGATACTCTGAAATGTAAACTGGCCGATGCAGTCGAGTCACTTCGTGCATCCACTCAGAGAACTTAAAATTTGATATCAACTTGTTTTGCACGACTGCAAATAATCTTTTAATGTTATCATGTCTACGTTTGAGATCATCAATTTGTGAATTGACTGCAAATAATTTTTTAATGCTATTTCCATTTTTTTGGTGATACAATTATCATTTTCATTTCAAGACTGCATACAATTCAGGGGTTTGAAAGGTACAAGTCTGCATACAATGGTGAGCTCTTACGGAGATAACAGAAAAACAAATGAAAAGGTAGATTTTTTTTTTTTTTTTTCCGCCTGATTTCTGATAGGTCTCCTCACTTCCAGGTGAGTAAAGGAGGCTGAGTTTTGGCAGGGGTTATAGCATTTCCACTGGGGTCATATAATATGACACCTGAGAAGTCCGGTAGCTGGCACTTTCCGCCCATGAGTATATTCTTCTGCCATATAGCAGCTTGTTGCTCTCTGCTGAAGAACATCTCATCATTGACATTCTCCGACTCGGCAGCATTCACAACACAGGCATTCACTCGTTGCGTAGTCACGACCGTTGCTTCTTGGTTCAGCTCAATGACAGGATCCTCAAACTCGTAACCATAATCCAAACAAGCATTCCAATGACGGCGCCATTTTCGGGCATGGGAAGCACACATGAACAATGCAAAAGCACACAGGAGAAGGCTCACACCAGCCATGCCAATCTGAGCTGTGCCTTGTGAAGGATGCATCATTTGCAGCTGCCTTGCCATCTTGGGGTAATTTGTAAATTTGTTTTCTCCGAAGAAATTAGAAAGTTTGTTTTGTCTGAAGACTTTTGAAGGCAGCATCTATTTATACAAGTTTGGGAAGTGGAGCTGTTGGCTTTTTGAGGTTTTGTTGACCTGATTTTGACCTGATTTGTGGTTTTGGTTTGCATCCTTTGAGAATGAGAACTTCGAATGAAGAATTCCTAACTTTGGGTTATTTATAAACTCAACAACTCTTTTACAATATCCTTTTACAAATTTTTGGATAGGTATACTGTAATTAAATATGCTTTTGATTATATATGTGTGTGTTATTGTTTCCATG

mRNA sequence

ATTATTTTGGGAAGTAGGAACCTAGCAATTGAATCCTAGTCCGGAGCAGGTCAAACCTCCGAACAGCACCGCCATGGGAAGTAGAAGAAAAGCTCTTCTCGAGCTCTCTCACTACGCAAACAGTCTCTTATGTCCAACCAAACGTTCTACTTTCCCCAACCCCACGCTCTCCACGAACGCTTTTTTAGCTTCTCGATTTTGTTCCTCTTCCTTTTCCAGAACCTCCACCGATGGCACCGCCATGGAAAATGATCAACCGCCGCAATCGAACAGAGATGCATTGCTTCTTGAGAAGTTCAGGCTCAGAAAACTCCAAGGCTCGTCAAAAATCTCGCAAGAATCATCGAGTTCTAATGGAGGTGAGAAGGTGATGACAGGTTTCAAGGAGTTGGGGCTTTGCAATGAATTGGCCGAGGCTGTAGAAGAAATGGGGATTTTTGCTCCTTCTGAGTTGCATTGTGTAGGGATTCCGGCTCTTTTGGAAAAAAAGAATGTGGTGTTGGGATCTCTTTATGGACCCGAAAGGGCTTTGGCTTACTTGCTGCCTCTCATTCAGAATCTAAAAAGGGATGGAAAGATATATGGAACAAGGTCCAAGCATCCTCGAGCTTTTGTTCTGTGCTCGACCGTGCAGCTATCTGAAGAGGTGTTTTATATGGCCAGGTTCATCAGCGAATACAGGCAGCTTGAAACTGCAAGGGATAATGGCTGTGGTGAATTACAACTTCAGAAAAGTGCATCTGATGTCTCGATCGGTTTGTTAATTGGCACCCCTGCTGAGGTCTCCAAACTCATTGAAGAGGGGAGGGTGGTTCCTGATGAAATCAAATACTTGGTATTGGATGAGTTGGATTCGATGTTCGGTCTTGGTTTTGGCCCCGACATTAAAAAGATTTTAACTTCAGTAAGACCCTGCAATGAAAAGTGTCAATCCATTGTACTTACTTCGACATTGATTAAGATGTTGCATGAACAACATTCATCCCTTGTAGAGTCTCTTAAGCGTGGTGATGCGGGAGAGGTTACTGCTATGCTTCTAGAAATTGAGGAAGAAGAGGCATTCCATCTTATGGAATCTCCCGATACTCTGAAATGTAAACTGGCCGATGCAGTCGAGTCACTTCGTGCATCCACTCAGAGAACTTAAAATTTGATATCAACTTGTTTTGCACGACTGCAAATAATCTTTTAATGTTATCATGTCTACGTTTGAGATCATCAATTTGTGAATTGACTGCAAATAATTTTTTAATGCTATTTCCATTTTTTTGGTGATACAATTATCATTTTCATTTCAAGACTGCATACAATTCAGGGGTTTGAAAGGTACAAGTCTGCATACAATGGTGAGCTCTTACGGAGATAACAGAAAAACAAATGAAAAGGTGAGTAAAGGAGGCTGAGTTTTGGCAGGGGTTATAGCATTTCCACTGGGGTCATATAATATGACACCTGAGAAGTCCGGTAGCTGGCACTTTCCGCCCATGAGTATATTCTTCTGCCATATAGCAGCTTGTTGCTCTCTGCTGAAGAACATCTCATCATTGACATTCTCCGACTCGGCAGCATTCACAACACAGGCATTCACTCGTTGCGTAGTCACGACCGTTGCTTCTTGGTTCAGCTCAATGACAGGATCCTCAAACTCGTAACCATAATCCAAACAAGCATTCCAATGACGGCGCCATTTTCGGGCATGGGAAGCACACATGAACAATGCAAAAGCACACAGGAGAAGGCTCACACCAGCCATGCCAATCTGAGCTGTGCCTTGTGAAGGATGCATCATTTGCAGCTGCCTTGCCATCTTGGGGTAATTTGTAAATTTGTTTTCTCCGAAGAAATTAGAAAGTTTGTTTTGTCTGAAGACTTTTGAAGGCAGCATCTATTTATACAAGTTTGGGAAGTGGAGCTGTTGGCTTTTTGAGGTTTTGTTGACCTGATTTTGACCTGATTTGTGGTTTTGGTTTGCATCCTTTGAGAATGAGAACTTCGAATGAAGAATTCCTAACTTTGGGTTATTTATAAACTCAACAACTCTTTTACAATATCCTTTTACAAATTTTTGGATAGGTATACTGTAATTAAATATGCTTTTGATTATATATGTGTGTGTTATTGTTTCCATG

Coding sequence (CDS)

ATGGGAAGTAGAAGAAAAGCTCTTCTCGAGCTCTCTCACTACGCAAACAGTCTCTTATGTCCAACCAAACGTTCTACTTTCCCCAACCCCACGCTCTCCACGAACGCTTTTTTAGCTTCTCGATTTTGTTCCTCTTCCTTTTCCAGAACCTCCACCGATGGCACCGCCATGGAAAATGATCAACCGCCGCAATCGAACAGAGATGCATTGCTTCTTGAGAAGTTCAGGCTCAGAAAACTCCAAGGCTCGTCAAAAATCTCGCAAGAATCATCGAGTTCTAATGGAGGTGAGAAGGTGATGACAGGTTTCAAGGAGTTGGGGCTTTGCAATGAATTGGCCGAGGCTGTAGAAGAAATGGGGATTTTTGCTCCTTCTGAGTTGCATTGTGTAGGGATTCCGGCTCTTTTGGAAAAAAAGAATGTGGTGTTGGGATCTCTTTATGGACCCGAAAGGGCTTTGGCTTACTTGCTGCCTCTCATTCAGAATCTAAAAAGGGATGGAAAGATATATGGAACAAGGTCCAAGCATCCTCGAGCTTTTGTTCTGTGCTCGACCGTGCAGCTATCTGAAGAGGTGTTTTATATGGCCAGGTTCATCAGCGAATACAGGCAGCTTGAAACTGCAAGGGATAATGGCTGTGGTGAATTACAACTTCAGAAAAGTGCATCTGATGTCTCGATCGGTTTGTTAATTGGCACCCCTGCTGAGGTCTCCAAACTCATTGAAGAGGGGAGGGTGGTTCCTGATGAAATCAAATACTTGGTATTGGATGAGTTGGATTCGATGTTCGGTCTTGGTTTTGGCCCCGACATTAAAAAGATTTTAACTTCAGTAAGACCCTGCAATGAAAAGTGTCAATCCATTGTACTTACTTCGACATTGATTAAGATGTTGCATGAACAACATTCATCCCTTGTAGAGTCTCTTAAGCGTGGTGATGCGGGAGAGGTTACTGCTATGCTTCTAGAAATTGAGGAAGAAGAGGCATTCCATCTTATGGAATCTCCCGATACTCTGAAATGTAAACTGGCCGATGCAGTCGAGTCACTTCGTGCATCCACTCAGAGAACTTAA

Protein sequence

MGSRRKALLELSHYANSLLCPTKRSTFPNPTLSTNAFLASRFCSSSFSRTSTDGTAMENDQPPQSNRDALLLEKFRLRKLQGSSKISQESSSSNGGEKVMTGFKELGLCNELAEAVEEMGIFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQNLKRDGKIYGTRSKHPRAFVLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSASDVSIGLLIGTPAEVSKLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSVRPCNEKCQSIVLTSTLIKMLHEQHSSLVESLKRGDAGEVTAMLLEIEEEEAFHLMESPDTLKCKLADAVESLRASTQRT

Homology

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BLAST of CcUC08G151220 vs. NCBI nr
Match: XP_038886391.1 (DEAD-box ATP-dependent RNA helicase 39-like [Benincasa hispida])

HSP 1 Score: 610.1 bits (1572), Expect = 1.2e-170
Identity = 317/359 (88.30%), Postives = 332/359 (92.48%), Query Frame = 0


Query: 1   MGSRRKALLELSHYANSLLCPTKRSTFPNPTLSTNAFLASRFCSSSFSRTSTDGTAMEND 60
           MGSRRKAL ELSHYANSLLCPTKRSTFPN TLS NAFLASR  SS+FSRTSTDGTAMEND
Sbjct: 1   MGSRRKALFELSHYANSLLCPTKRSTFPNLTLSRNAFLASRLHSSAFSRTSTDGTAMEND 60

Query: 61  QPPQSNRDALLLEKFRLRKLQGSSKISQESS--SSNGGEKVMTGFKELGLCNELAEAVEE 120
           QPPQSNRDA+LLEKFRLRKL+GSSK+SQESS  SSN GEKV+TGFKELGLCNELAEAVEE
Sbjct: 61  QPPQSNRDAMLLEKFRLRKLKGSSKVSQESSSTSSNRGEKVITGFKELGLCNELAEAVEE 120

Query: 121 MGIFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQNLKRDGKIYGTRSKHPR 180
           MGIFAPSELHCVGIPALLE KNVVLGSLYGPERALAYLLPLIQNLKRDGK YG RSKHPR
Sbjct: 121 MGIFAPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDGKKYGVRSKHPR 180

Query: 181 AFVLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSASDVSIGLLIGTPAEVS 240
           AFVLCS+V+LS+EVF MA+FIS YRQL TARDNGC EL+LQKSASD+SIGLLIGTP E+ 
Sbjct: 181 AFVLCSSVELSDEVFQMAKFISNYRQLATARDNGCIELELQKSASDISIGLLIGTPGEIL 240

Query: 241 KLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSVRPCNEKCQSIVLTSTLIKML 300
           KLIEEG VVPDEI YLVLDELDSMF LGFGP+IK ILTSVR CNEKCQS+VLTST IKML
Sbjct: 241 KLIEEGSVVPDEINYLVLDELDSMFDLGFGPNIKDILTSVRHCNEKCQSVVLTSTFIKML 300

Query: 301 HEQHSSLVESLKRGDAGEVTAMLLEIEEEEAFHLMESPDTLKCKLADAVESLRASTQRT 358
           HEQHSSLVESLKRGD GE+ AMLLEIEEEEAFHLMESPDTLKCKLAD VESL ASTQRT
Sbjct: 301 HEQHSSLVESLKRGDTGEIAAMLLEIEEEEAFHLMESPDTLKCKLADVVESLCASTQRT 359

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BLAST of CcUC08G151220 vs. NCBI nr
Match: XP_008456722.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis melo] >KAA0031628.1 DEAD-box ATP-dependent RNA helicase 39-like [Cucumis melo var. makuwa])

HSP 1 Score: 551.6 bits (1420), Expect = 5.0e-153
Identity = 288/357 (80.67%), Postives = 312/357 (87.39%), Query Frame = 0


Query: 1   MGSRRKALLELSHYANSLLCPTKRSTFPNPTLSTNAFLASRFCSSSFSRTSTDGTAMEND 60
           MGSRRKALLELSH AN LL PTKRS FPN  LS NA LAS FCSS+FSR+S DGT +END
Sbjct: 1   MGSRRKALLELSHCANILLSPTKRSIFPNFALSANALLASPFCSSTFSRSSADGTPVEND 60

Query: 61  QPPQSNRDALLLEKFRLRKLQGSSKISQESSSSNGGEKVMTGFKELGLCNELAEAVEEMG 120
           QPPQSNRD+ LLEKFRLRKL+G SKISQ SSSSNGGEKVMTGF++LGLCNELA AVEEMG
Sbjct: 61  QPPQSNRDSTLLEKFRLRKLKGLSKISQHSSSSNGGEKVMTGFRQLGLCNELAGAVEEMG 120

Query: 121 IFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQNLKRDGKIYGTRSKHPRAF 180
           I APSEL C  IPA+LE KNVVLG L GPERALAYLLPLIQNLKRD K YGTRSKHPRAF
Sbjct: 121 ILAPSELDCAAIPAVLEGKNVVLGYLNGPERALAYLLPLIQNLKRDEKRYGTRSKHPRAF 180

Query: 181 VLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSASDVSIGLLIGTPAEVSKL 240
           V+C T QLSEE+F MA++IS YRQL+T RDN CGEL+LQKSASDVSIGLLIGTP E+S+L
Sbjct: 181 VMCPTAQLSEELFCMAKYISNYRQLKTPRDNSCGELELQKSASDVSIGLLIGTPDEISEL 240

Query: 241 IEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSVRPCNEKCQSIVLTSTLIKMLHE 300
           IEEG VV DEI YLV DELDSMF LGFGP+IKKILTSVR CNEKC+SIV+TSTLIKM+HE
Sbjct: 241 IEEGSVVLDEINYLVFDELDSMFDLGFGPNIKKILTSVRHCNEKCRSIVVTSTLIKMMHE 300

Query: 301 QHSSLVESLKRGDAGEVTAMLLEIEEEEAFHLMESPDTLKCKLADAVESLRASTQRT 358
           Q SSLV+SL+ GDAGE+ AM+LEIEEEEAFHLMESPD LK KLAD VESLR STQ T
Sbjct: 301 QRSSLVKSLRCGDAGEIAAMVLEIEEEEAFHLMESPDALKSKLADVVESLRPSTQET 357

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BLAST of CcUC08G151220 vs. NCBI nr
Match: XP_004141005.1 (DEAD-box ATP-dependent RNA helicase 39 [Cucumis sativus] >KGN46104.1 hypothetical protein Csa_004924 [Cucumis sativus])

HSP 1 Score: 548.1 bits (1411), Expect = 5.5e-152
Identity = 282/357 (78.99%), Postives = 313/357 (87.68%), Query Frame = 0


Query: 1   MGSRRKALLELSHYANSLLCPTKRSTFPNPTLSTNAFLASRFCSSSFSRTSTDGTAMEND 60
           MGSRRKA+LE SH AN LL PTKRS FPN TLSTNAFLAS+FCSS+FSR+STDGT +EN+
Sbjct: 1   MGSRRKAILEFSHCANILLSPTKRSIFPNSTLSTNAFLASQFCSSTFSRSSTDGTPVENE 60

Query: 61  QPPQSNRDALLLEKFRLRKLQGSSKISQESSSSNGGEKVMTGFKELGLCNELAEAVEEMG 120
           QP QSNRD+ LLEKFRLRKL+G SKISQ+S SSNGGEK MTGF++LGLCNEL EAVE+MG
Sbjct: 61  QPRQSNRDSTLLEKFRLRKLKGLSKISQDSPSSNGGEKAMTGFRDLGLCNELGEAVEKMG 120

Query: 121 IFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQNLKRDGKIYGTRSKHPRAF 180
           + APSEL C GIPA+LE KNVV G L  PERALAYLLPLIQNLKRD K YGTRSKHPRAF
Sbjct: 121 VLAPSELDCAGIPAVLEGKNVVFGYLDEPERALAYLLPLIQNLKRDEKRYGTRSKHPRAF 180

Query: 181 VLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSASDVSIGLLIGTPAEVSKL 240
           V+C T QLSEE+F MA++ S YRQL+T RDNGCGEL+LQKSASDVSIGLLIGTP E+S+L
Sbjct: 181 VMCPTAQLSEELFCMAKYFSNYRQLKTPRDNGCGELELQKSASDVSIGLLIGTPDEISEL 240

Query: 241 IEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSVRPCNEKCQSIVLTSTLIKMLHE 300
           IE+G VV DEI YLV DELDSMF LGFGP+IKKILTSVR CN+KCQSIV+TSTLIKM+HE
Sbjct: 241 IEDGSVVLDEINYLVFDELDSMFDLGFGPNIKKILTSVRNCNKKCQSIVVTSTLIKMMHE 300

Query: 301 QHSSLVESLKRGDAGEVTAMLLEIEEEEAFHLMESPDTLKCKLADAVESLRASTQRT 358
           Q SSLV+SL+ GDAGE+ AM+LEIEEEEAFHLMESPD LK KLAD VESLR STQ T
Sbjct: 301 QRSSLVKSLRCGDAGEIAAMVLEIEEEEAFHLMESPDALKSKLADVVESLRPSTQET 357

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BLAST of CcUC08G151220 vs. NCBI nr
Match: XP_022959642.1 (DEAD-box ATP-dependent RNA helicase 39-like [Cucurbita moschata])

HSP 1 Score: 535.4 bits (1378), Expect = 3.7e-148
Identity = 285/370 (77.03%), Postives = 313/370 (84.59%), Query Frame = 0


Query: 1   MGSRRKALLELSHYANSLLCPTKRSTFPNPTLSTNAFLASRFCSSSFSRTSTDGTAMEND 60
           MGSRRKALLEL HY NSL CPTK + F NP  STNAFLASR+ SSSFSRT T     END
Sbjct: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLT----TEND 60

Query: 61  QPPQSNRDALLLEKFRLRKLQGSSKISQESSSS--------NGGEKVMTGFKELGLCNEL 120
           +PP+++R+A+LLEKFR RKL+GSS IS+ES SS        NGGEKVMTGFKELGL NE+
Sbjct: 61  RPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEV 120

Query: 121 AEAVEEMGIFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQNLKRDGKIYGT 180
           AEA E MG F PSELHCVGIPALLE KNVVLGSLYGPERALAYLLPLIQNLKRD K  G 
Sbjct: 121 AEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGV 180

Query: 181 RSKHPRAFVLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSASDVSIGLLIG 240
           RSKHPRAFV+CST +LS+EVF MA+FIS Y+QL+TA+DNG G+L+LQ  ASDVSIGLLIG
Sbjct: 181 RSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIG 240

Query: 241 TPAEVSKLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSV-----RPCNEKCQS 300
           TP EVS+LIE+G VV DEIKYLVLDELD+MF LGFGP+IKKILTSV     R CN+KCQS
Sbjct: 241 TPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQS 300

Query: 301 IVLTSTLIKMLHEQHSSLVESLKRGDAGEVTAMLLEIEEEEAFHLMESPDTLKCKLADAV 358
           +V+TSTLIKMLHEQHSSLVESLKR D GE+ AMLLEIEEEEAFHLMESPDTLKCKLADAV
Sbjct: 301 VVVTSTLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAV 360

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BLAST of CcUC08G151220 vs. NCBI nr
Match: KAG6602207.1 (DEAD-box ATP-dependent RNA helicase 39, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 533.9 bits (1374), Expect = 1.1e-147
Identity = 286/370 (77.30%), Postives = 312/370 (84.32%), Query Frame = 0


Query: 1   MGSRRKALLELSHYANSLLCPTKRSTFPNPTLSTNAFLASRFCSSSFSRTSTDGTAMEND 60
           MGSRRKALLEL HY NSL CPTK + F NP  STNAFLASR  S  FSRT T     END
Sbjct: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRHFSYPFSRTFT----TEND 60

Query: 61  QPPQSNRDALLLEKFRLRKLQGSSKISQESSSS--------NGGEKVMTGFKELGLCNEL 120
           +PP+++R+A+LLEKFR RKL+GSS IS+ES SS        NGGEKVMTGFKELGL NE+
Sbjct: 61  RPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEV 120

Query: 121 AEAVEEMGIFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQNLKRDGKIYGT 180
           AEAVE MG F PSELHCVGIPALLE KNVVLGSLYGPERALAYLLPLIQNLKRD K  G 
Sbjct: 121 AEAVEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGV 180

Query: 181 RSKHPRAFVLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSASDVSIGLLIG 240
           RSKHPRAFV+CST +LS+EVF MA+FIS YRQL+TA+DNG G+L+LQ  ASDVSIGLLIG
Sbjct: 181 RSKHPRAFVMCSTTELSDEVFQMAKFISNYRQLKTAKDNGFGQLELQNGASDVSIGLLIG 240

Query: 241 TPAEVSKLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSV-----RPCNEKCQS 300
           TP EVS+LIE+G VV DEIKYLVLDELD+MF LGFGP+IKKILTSV     R CN+KCQS
Sbjct: 241 TPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQS 300

Query: 301 IVLTSTLIKMLHEQHSSLVESLKRGDAGEVTAMLLEIEEEEAFHLMESPDTLKCKLADAV 358
           +V+TSTLIKMLHEQHSSLVESLKR D GE+ AMLLEIEEEEAFHLMESPDTLKCKLADAV
Sbjct: 301 VVVTSTLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAV 360

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BLAST of CcUC08G151220 vs. ExPASy Swiss-Prot
Match: Q56X76 (DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 PE=2 SV=2)

HSP 1 Score: 173.7 bits (439), Expect = 3.7e-42
Identity = 99/286 (34.62%), Postives = 173/286 (60.49%), Query Frame = 0


Query: 46  SFSRTSTDGTAMENDQPPQSNRDALLLEKFRLRKLQGSSK-----------ISQESSSSN 105
           S + T++  T   N   P   +  +LLE+ RLR L+ S+K           + +ESS   
Sbjct: 46  SAAATTSSPTTETNVTDPDQLKHTILLERLRLRHLKESAKPPQQRPSSVVGVEEESSIRK 105

Query: 106 GGEKVMTGFKELGLCNELAEAVEEMGIFAPSELHCVGIPALLEKKNVVLGSLYGPERALA 165
             +K++  F+ELGL  E+  A++E+ I  P+E+ C+GIPA++E+K+VVLGS  G  + LA
Sbjct: 106 KSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLA 165

Query: 166 YLLPLIQNLKRDGKIYG--TRSKHPRAFVLCSTVQLSEEVFYMARFISEYRQLETARDNG 225
           YLLP++Q ++ D    G  T+ + PR  VLC T +LSE+V+ +A+ IS + +  +   +G
Sbjct: 166 YLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSG 225

Query: 226 CGELQLQKSASDVSIGLLIGTPAEVSKLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIK 285
              ++ Q+ + + +I +++GTP  + + IEEG +V  +I YLVLDE D+MF  GFGP+I+
Sbjct: 226 GSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIR 285

Query: 286 KILT-----SVRPCNEKCQSIVLTSTL---IKMLHEQHSSLVESLK 311
           K L      +++  ++  Q++++T+T+   ++ L ++    +E L+
Sbjct: 286 KFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLR 331

[Close]

BLAST of CcUC08G151220 vs. ExPASy Swiss-Prot
Match: Q5VRY0 (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-40
Identity = 104/304 (34.21%), Postives = 175/304 (57.57%), Query Frame = 0


Query: 26  TFPNPTLSTNAFLASRFCSSSFSRTSTDGTAMENDQPPQS------NRDALLLEKFRLRK 85
           T P+P L     L +   +++ + T+   +A+     P++      +R  LLLE+ R R 
Sbjct: 14  TRPSPLLRLR-LLRAALATTTTTTTAAGASAVTAPTEPETTAREAPSRHELLLERLRQRH 73

Query: 86  LQG----SSKISQESSSSNGG------------EKVMTGFKELGLCNELAEAVEEMGIFA 145
           L+G    + + +Q      GG             +V+  F+ELGL  E+  A+ EMGI  
Sbjct: 74  LKGVPAATPRPAQREKGRGGGGGGAQELQQKRRVEVVDSFEELGLGEEVMAALGEMGISK 133

Query: 146 PSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQNLKRDGKIYG--TRSKHPRAFV 205
           P+E+ CVG+PA+L   +VVLGS  G  + LAYLLPL+Q L+RD  + G   + + PRA V
Sbjct: 134 PTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVV 193

Query: 206 LCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSASDVSIGLLIGTPAEVSKLI 265
           LC T +L+E+VF +A+ IS + +  +   +G   ++ Q+ + ++ + +++GTP  +   I
Sbjct: 194 LCPTRELTEQVFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHI 253

Query: 266 EEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILT-----SVRPCNEKCQSIVLTSTLIK 301
           ++G +V  +IKYLVLDE D+MF  GFGPDI+K L      + +P ++  Q++++T+T+ K
Sbjct: 254 KDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTK 313

[Close]

BLAST of CcUC08G151220 vs. ExPASy Swiss-Prot
Match: Q55804 (RNA helicase CrhR OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=crhR PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-15
Identity = 50/199 (25.13%), Postives = 102/199 (51.26%), Query Frame = 0


Query: 103 FKELGLCNELAEAVEEMGIFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQN 162
           F +LGL  +  + + ++G  AP+++    IP LL  ++++  S  G  +  A+ LPL+  
Sbjct: 9   FADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLMDR 68

Query: 163 LKRDGKIYGTRSKHPRAFVLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSA 222
           +  +G +        +A +L  T +L+++V    +  S  R+L      G   ++ Q  +
Sbjct: 69  IDPEGDL--------QALILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRS 128

Query: 223 SDVSIGLLIGTPAEVSKLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSVRPCN 282
            +  + +++GTP  V  LI+  ++  + I+++VLDE D M  +GF  D+K IL    P  
Sbjct: 129 LERGVQIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTR 188

Query: 283 E-KCQSIVLTSTLIKMLHE 301
           +  C S  +   + +++++
Sbjct: 189 QTACFSATMPREIKELVNQ 199

[Close]

BLAST of CcUC08G151220 vs. ExPASy Swiss-Prot
Match: P42305 (ATP-dependent RNA helicase DbpA OS=Bacillus subtilis (strain 168) OX=224308 GN=dbpA PE=1 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-15
Identity = 66/266 (24.81%), Postives = 129/266 (48.50%), Query Frame = 0


Query: 100 MTGFKELGLCNELAEAVEEMGIFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPL 159
           M+ FK   + +++  A+E +G   P+++    IPA LE+K++V+ S  G  +  ++ +PL
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 160 IQNLKRDGKIYGTRSKHPRAFVLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQ 219
            +    D          P+A +L  T +L+ +V      I  +++++     G      Q
Sbjct: 61  CELANWD-------ENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQ 120

Query: 220 KSASDVSIGLLIGTPAEVSKLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSVR 279
           K+       +++GTP  V   IE+G +  D + YLV+DE D M  +GF   I+++   ++
Sbjct: 121 KAELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGF---IEQVEAIIK 180

Query: 280 PCNEKCQSIVLTSTL---IKMLHEQHSSLVESLKRGDAGEVTA----MLLEIEEEEAFHL 339
               +  +++ ++TL   I+ L  Q+    E ++   AG  T      ++++ EE  F L
Sbjct: 181 HLPTERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSL 240

Query: 340 M------ESPDT--LKCKLADAVESL 351
           +      E+PD+  + C+  + V  L
Sbjct: 241 LKDVLMTENPDSCIIFCRTKEHVNQL 256

[Close]

BLAST of CcUC08G151220 vs. ExPASy Swiss-Prot
Match: Q0DVX2 (DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0108600 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-15
Identity = 74/296 (25.00%), Postives = 131/296 (44.26%), Query Frame = 0


Query: 40  SRFCSSSFSRTSTDGTAMENDQPPQSNRDALLL-EKFR--------LRKLQGSSKISQES 99
           SRF  S    +  DGT  E D+   + +++    +K R        LR+ +G+  +    
Sbjct: 144 SRFSESPSDESDEDGTYFERDRARNTRQNSRSRDDKTRGAHSLNSVLRQYRGADDLDFPG 203

Query: 100 SSSNGGEK--------------------------VMTGFKELGLCNELAEAVEEMGIFAP 159
           S +  G K                              FKE+G  +E+  A+   G   P
Sbjct: 204 SEATSGSKRWGNISDVTFGRQNQRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRP 263

Query: 160 SELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQNLKRD--GKIYGTRSKHPRAFVL 219
           S +  +    +LE K+ ++G   G  + LAYL P++QNL+++    ++ +  ++PR  VL
Sbjct: 264 SHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVL 323

Query: 220 CSTVQLSEEVFYMARFISE----YRQLETARDNGCGELQLQKSASDVSIGLLIGTPAEVS 279
             T +L+ +V    R IS+    +R +      G    + Q  + D  + +LI TP    
Sbjct: 324 TPTAELASQVLNNCRSISKSGVPFRSMVA---TGGFRQKTQLESLDQELDVLIATPGRFL 383

Query: 280 KLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSVRPCNEKCQSIVLTSTL 295
            L++EG V  + ++ +VLDE+D ++G      +   L +V P     Q + +T+TL
Sbjct: 384 YLLQEGFVQLNNLRCVVLDEVDILYGEESFEQVLHQLITVAPLT--TQYLFVTATL 434

[Close]

BLAST of CcUC08G151220 vs. ExPASy TrEMBL
Match: A0A5A7SLY8 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G003970 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 2.4e-153
Identity = 288/357 (80.67%), Postives = 312/357 (87.39%), Query Frame = 0


Query: 1   MGSRRKALLELSHYANSLLCPTKRSTFPNPTLSTNAFLASRFCSSSFSRTSTDGTAMEND 60
           MGSRRKALLELSH AN LL PTKRS FPN  LS NA LAS FCSS+FSR+S DGT +END
Sbjct: 1   MGSRRKALLELSHCANILLSPTKRSIFPNFALSANALLASPFCSSTFSRSSADGTPVEND 60

Query: 61  QPPQSNRDALLLEKFRLRKLQGSSKISQESSSSNGGEKVMTGFKELGLCNELAEAVEEMG 120
           QPPQSNRD+ LLEKFRLRKL+G SKISQ SSSSNGGEKVMTGF++LGLCNELA AVEEMG
Sbjct: 61  QPPQSNRDSTLLEKFRLRKLKGLSKISQHSSSSNGGEKVMTGFRQLGLCNELAGAVEEMG 120

Query: 121 IFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQNLKRDGKIYGTRSKHPRAF 180
           I APSEL C  IPA+LE KNVVLG L GPERALAYLLPLIQNLKRD K YGTRSKHPRAF
Sbjct: 121 ILAPSELDCAAIPAVLEGKNVVLGYLNGPERALAYLLPLIQNLKRDEKRYGTRSKHPRAF 180

Query: 181 VLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSASDVSIGLLIGTPAEVSKL 240
           V+C T QLSEE+F MA++IS YRQL+T RDN CGEL+LQKSASDVSIGLLIGTP E+S+L
Sbjct: 181 VMCPTAQLSEELFCMAKYISNYRQLKTPRDNSCGELELQKSASDVSIGLLIGTPDEISEL 240

Query: 241 IEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSVRPCNEKCQSIVLTSTLIKMLHE 300
           IEEG VV DEI YLV DELDSMF LGFGP+IKKILTSVR CNEKC+SIV+TSTLIKM+HE
Sbjct: 241 IEEGSVVLDEINYLVFDELDSMFDLGFGPNIKKILTSVRHCNEKCRSIVVTSTLIKMMHE 300

Query: 301 QHSSLVESLKRGDAGEVTAMLLEIEEEEAFHLMESPDTLKCKLADAVESLRASTQRT 358
           Q SSLV+SL+ GDAGE+ AM+LEIEEEEAFHLMESPD LK KLAD VESLR STQ T
Sbjct: 301 QRSSLVKSLRCGDAGEIAAMVLEIEEEEAFHLMESPDALKSKLADVVESLRPSTQET 357

[Close]

BLAST of CcUC08G151220 vs. ExPASy TrEMBL
Match: A0A1S3C4L0 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo OX=3656 GN=LOC103496581 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 2.4e-153
Identity = 288/357 (80.67%), Postives = 312/357 (87.39%), Query Frame = 0


Query: 1   MGSRRKALLELSHYANSLLCPTKRSTFPNPTLSTNAFLASRFCSSSFSRTSTDGTAMEND 60
           MGSRRKALLELSH AN LL PTKRS FPN  LS NA LAS FCSS+FSR+S DGT +END
Sbjct: 1   MGSRRKALLELSHCANILLSPTKRSIFPNFALSANALLASPFCSSTFSRSSADGTPVEND 60

Query: 61  QPPQSNRDALLLEKFRLRKLQGSSKISQESSSSNGGEKVMTGFKELGLCNELAEAVEEMG 120
           QPPQSNRD+ LLEKFRLRKL+G SKISQ SSSSNGGEKVMTGF++LGLCNELA AVEEMG
Sbjct: 61  QPPQSNRDSTLLEKFRLRKLKGLSKISQHSSSSNGGEKVMTGFRQLGLCNELAGAVEEMG 120

Query: 121 IFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQNLKRDGKIYGTRSKHPRAF 180
           I APSEL C  IPA+LE KNVVLG L GPERALAYLLPLIQNLKRD K YGTRSKHPRAF
Sbjct: 121 ILAPSELDCAAIPAVLEGKNVVLGYLNGPERALAYLLPLIQNLKRDEKRYGTRSKHPRAF 180

Query: 181 VLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSASDVSIGLLIGTPAEVSKL 240
           V+C T QLSEE+F MA++IS YRQL+T RDN CGEL+LQKSASDVSIGLLIGTP E+S+L
Sbjct: 181 VMCPTAQLSEELFCMAKYISNYRQLKTPRDNSCGELELQKSASDVSIGLLIGTPDEISEL 240

Query: 241 IEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSVRPCNEKCQSIVLTSTLIKMLHE 300
           IEEG VV DEI YLV DELDSMF LGFGP+IKKILTSVR CNEKC+SIV+TSTLIKM+HE
Sbjct: 241 IEEGSVVLDEINYLVFDELDSMFDLGFGPNIKKILTSVRHCNEKCRSIVVTSTLIKMMHE 300

Query: 301 QHSSLVESLKRGDAGEVTAMLLEIEEEEAFHLMESPDTLKCKLADAVESLRASTQRT 358
           Q SSLV+SL+ GDAGE+ AM+LEIEEEEAFHLMESPD LK KLAD VESLR STQ T
Sbjct: 301 QRSSLVKSLRCGDAGEIAAMVLEIEEEEAFHLMESPDALKSKLADVVESLRPSTQET 357

[Close]

BLAST of CcUC08G151220 vs. ExPASy TrEMBL
Match: A0A0A0KB87 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052790 PE=4 SV=1)

HSP 1 Score: 548.1 bits (1411), Expect = 2.7e-152
Identity = 282/357 (78.99%), Postives = 313/357 (87.68%), Query Frame = 0


Query: 1   MGSRRKALLELSHYANSLLCPTKRSTFPNPTLSTNAFLASRFCSSSFSRTSTDGTAMEND 60
           MGSRRKA+LE SH AN LL PTKRS FPN TLSTNAFLAS+FCSS+FSR+STDGT +EN+
Sbjct: 1   MGSRRKAILEFSHCANILLSPTKRSIFPNSTLSTNAFLASQFCSSTFSRSSTDGTPVENE 60

Query: 61  QPPQSNRDALLLEKFRLRKLQGSSKISQESSSSNGGEKVMTGFKELGLCNELAEAVEEMG 120
           QP QSNRD+ LLEKFRLRKL+G SKISQ+S SSNGGEK MTGF++LGLCNEL EAVE+MG
Sbjct: 61  QPRQSNRDSTLLEKFRLRKLKGLSKISQDSPSSNGGEKAMTGFRDLGLCNELGEAVEKMG 120

Query: 121 IFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQNLKRDGKIYGTRSKHPRAF 180
           + APSEL C GIPA+LE KNVV G L  PERALAYLLPLIQNLKRD K YGTRSKHPRAF
Sbjct: 121 VLAPSELDCAGIPAVLEGKNVVFGYLDEPERALAYLLPLIQNLKRDEKRYGTRSKHPRAF 180

Query: 181 VLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSASDVSIGLLIGTPAEVSKL 240
           V+C T QLSEE+F MA++ S YRQL+T RDNGCGEL+LQKSASDVSIGLLIGTP E+S+L
Sbjct: 181 VMCPTAQLSEELFCMAKYFSNYRQLKTPRDNGCGELELQKSASDVSIGLLIGTPDEISEL 240

Query: 241 IEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSVRPCNEKCQSIVLTSTLIKMLHE 300
           IE+G VV DEI YLV DELDSMF LGFGP+IKKILTSVR CN+KCQSIV+TSTLIKM+HE
Sbjct: 241 IEDGSVVLDEINYLVFDELDSMFDLGFGPNIKKILTSVRNCNKKCQSIVVTSTLIKMMHE 300

Query: 301 QHSSLVESLKRGDAGEVTAMLLEIEEEEAFHLMESPDTLKCKLADAVESLRASTQRT 358
           Q SSLV+SL+ GDAGE+ AM+LEIEEEEAFHLMESPD LK KLAD VESLR STQ T
Sbjct: 301 QRSSLVKSLRCGDAGEIAAMVLEIEEEEAFHLMESPDALKSKLADVVESLRPSTQET 357

[Close]

BLAST of CcUC08G151220 vs. ExPASy TrEMBL
Match: A0A6J1H541 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita moschata OX=3662 GN=LOC111460659 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 1.8e-148
Identity = 285/370 (77.03%), Postives = 313/370 (84.59%), Query Frame = 0


Query: 1   MGSRRKALLELSHYANSLLCPTKRSTFPNPTLSTNAFLASRFCSSSFSRTSTDGTAMEND 60
           MGSRRKALLEL HY NSL CPTK + F NP  STNAFLASR+ SSSFSRT T     END
Sbjct: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLT----TEND 60

Query: 61  QPPQSNRDALLLEKFRLRKLQGSSKISQESSSS--------NGGEKVMTGFKELGLCNEL 120
           +PP+++R+A+LLEKFR RKL+GSS IS+ES SS        NGGEKVMTGFKELGL NE+
Sbjct: 61  RPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEV 120

Query: 121 AEAVEEMGIFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQNLKRDGKIYGT 180
           AEA E MG F PSELHCVGIPALLE KNVVLGSLYGPERALAYLLPLIQNLKRD K  G 
Sbjct: 121 AEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGV 180

Query: 181 RSKHPRAFVLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSASDVSIGLLIG 240
           RSKHPRAFV+CST +LS+EVF MA+FIS Y+QL+TA+DNG G+L+LQ  ASDVSIGLLIG
Sbjct: 181 RSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIG 240

Query: 241 TPAEVSKLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSV-----RPCNEKCQS 300
           TP EVS+LIE+G VV DEIKYLVLDELD+MF LGFGP+IKKILTSV     R CN+KCQS
Sbjct: 241 TPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQS 300

Query: 301 IVLTSTLIKMLHEQHSSLVESLKRGDAGEVTAMLLEIEEEEAFHLMESPDTLKCKLADAV 358
           +V+TSTLIKMLHEQHSSLVESLKR D GE+ AMLLEIEEEEAFHLMESPDTLKCKLADAV
Sbjct: 301 VVVTSTLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAV 360

[Close]

BLAST of CcUC08G151220 vs. ExPASy TrEMBL
Match: A0A6J1JT03 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita maxima OX=3661 GN=LOC111487576 PE=4 SV=1)

HSP 1 Score: 533.5 bits (1373), Expect = 6.8e-148
Identity = 284/370 (76.76%), Postives = 315/370 (85.14%), Query Frame = 0


Query: 1   MGSRRKALLELSHYANSLLCPTKRSTFPNPTLSTNAFLASRFCSSSFSRTSTDGTAMEND 60
           MGSRRKALLELSHY NSL CPTKRS+F NP +S NAFLASR+ SSSFSRTS      END
Sbjct: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTS----ETEND 60

Query: 61  QPPQSNRDALLLEKFRLRKLQGSSKISQESSSS--------NGGEKVMTGFKELGLCNEL 120
           +PP+++R+A+LLEKFR RKL+GSS IS+ES SS        NGGEKVMTGFKELGL NE+
Sbjct: 61  RPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEV 120

Query: 121 AEAVEEMGIFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQNLKRDGKIYGT 180
           AEA E MG F PSEL CVGIPALLE KNVVLGSLYGPERAL YLLPLIQNLKRD K  G 
Sbjct: 121 AEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGV 180

Query: 181 RSKHPRAFVLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSASDVSIGLLIG 240
           RSKHPRAFV+CST +LS+EVF MA+FIS Y+QL+TA+DNG G+L+LQ  ASDVSIGLLIG
Sbjct: 181 RSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIG 240

Query: 241 TPAEVSKLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSV-----RPCNEKCQS 300
           TP EVS+LIE+G +V DEIKYLVLDELD+MF LGFGP+IKKILTSV     R CN+KCQS
Sbjct: 241 TPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQS 300

Query: 301 IVLTSTLIKMLHEQHSSLVESLKRGDAGEVTAMLLEIEEEEAFHLMESPDTLKCKLADAV 358
           +V+TSTLIKMLH+QHSSLVESLKR D GE+ AMLLEIEEEEAFHLMESPDTLKCKLADAV
Sbjct: 301 VVVTSTLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAV 360

[Close]

BLAST of CcUC08G151220 vs. TAIR 10
Match: AT4G09730.1 (RH39 )

HSP 1 Score: 173.7 bits (439), Expect = 2.6e-43
Identity = 99/286 (34.62%), Postives = 173/286 (60.49%), Query Frame = 0


Query: 46  SFSRTSTDGTAMENDQPPQSNRDALLLEKFRLRKLQGSSK-----------ISQESSSSN 105
           S + T++  T   N   P   +  +LLE+ RLR L+ S+K           + +ESS   
Sbjct: 46  SAAATTSSPTTETNVTDPDQLKHTILLERLRLRHLKESAKPPQQRPSSVVGVEEESSIRK 105

Query: 106 GGEKVMTGFKELGLCNELAEAVEEMGIFAPSELHCVGIPALLEKKNVVLGSLYGPERALA 165
             +K++  F+ELGL  E+  A++E+ I  P+E+ C+GIPA++E+K+VVLGS  G  + LA
Sbjct: 106 KSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLA 165

Query: 166 YLLPLIQNLKRDGKIYG--TRSKHPRAFVLCSTVQLSEEVFYMARFISEYRQLETARDNG 225
           YLLP++Q ++ D    G  T+ + PR  VLC T +LSE+V+ +A+ IS + +  +   +G
Sbjct: 166 YLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSG 225

Query: 226 CGELQLQKSASDVSIGLLIGTPAEVSKLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIK 285
              ++ Q+ + + +I +++GTP  + + IEEG +V  +I YLVLDE D+MF  GFGP+I+
Sbjct: 226 GSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIR 285

Query: 286 KILT-----SVRPCNEKCQSIVLTSTL---IKMLHEQHSSLVESLK 311
           K L      +++  ++  Q++++T+T+   ++ L ++    +E L+
Sbjct: 286 KFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLR 331

[Close]

BLAST of CcUC08G151220 vs. TAIR 10
Match: AT5G14610.2 (DEAD box RNA helicase family protein )

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-16
Identity = 57/222 (25.68%), Postives = 106/222 (47.75%), Query Frame = 0


Query: 100 MTGFKELGLCNELAEAVEEMGIFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPL 159
           +  F+  GL NEL   V   G  APS +     P  ++ +++V  +  G  + L YL+P 
Sbjct: 160 LMSFEATGLPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPG 219

Query: 160 IQNLKRDGKIYGTRSKHPRAFVLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQ 219
             +L+R   I+      P   VL  T +L+ ++   A    +  ++  A   G      Q
Sbjct: 220 FMHLQR---IHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQ 279

Query: 220 KSASDVSIGLLIGTPAEVSKLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSVR 279
               +  + +++ TP  ++ ++E  R+   ++ YLVLDE D M  +GF P I+KI+  V 
Sbjct: 280 LKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEV- 339

Query: 280 PCNEKCQSIVLTSTLIKMLHEQHSSLVESLKRGDAGEVTAML 322
               K Q+++ T+T  K + +  + L+ +  + + G V  ++
Sbjct: 340 --PTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELV 375

[Close]

BLAST of CcUC08G151220 vs. TAIR 10
Match: AT4G34910.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-16
Identity = 68/234 (29.06%), Postives = 114/234 (48.72%), Query Frame = 0


Query: 88  QESSSSNGGEKVMTGFKELGLCNELAEAVEEMGIFAPSELHCVGIPALLEKKNVVLGSLY 147
           +E       E+    F+ELGL + L  A+ + GI  P+ +    IP +LE K+VV  +  
Sbjct: 33  REQEEEQKEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKT 92

Query: 148 GPERALAYLLPLIQNLKRDGKIYGTRSKHPRAFVLCSTVQLSEEVFYMARFISEYRQLET 207
           G  + LAYLLPL+Q L     +   +   P AF+L  + +L ++V+     + E  +++ 
Sbjct: 93  GSGKTLAYLLPLLQKLFSADSV-SKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQL 152

Query: 208 ARDNGCGELQLQKSASDVSIGL------LIGTPAEVSKLIEEGRVVP----DEIKYLVLD 267
                  +L    SASD+   L      L+ TPA + K    G + P    + +  LVLD
Sbjct: 153 K----AVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLD 212

Query: 268 ELDSMFGLGFGPDIKKILTSVRPCNEKCQSIVLTSTLIKMLHEQHSSLVESLKR 312
           E D +   G+  +++ + TS+ P   +CQ +++++T         SS VE LK+
Sbjct: 213 EADLLLSYGYEDNLRSV-TSIIP--RRCQCLLMSATT--------SSDVEKLKK 250

[Close]

BLAST of CcUC08G151220 vs. TAIR 10
Match: AT2G42520.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-14
Identity = 73/327 (22.32%), Postives = 144/327 (44.04%), Query Frame = 0


Query: 44  SSSFSRTSTDGTAMEND----QPPQSNRDALLLEKFRLRKLQGSSKISQESSSSNGGEKV 103
           S  + R   +    END    +P  + +D  ++             I  E+S  N    V
Sbjct: 105 SGGWDRREREVNPFENDDSEPEPAFTEQDNTVI------NFDAYEDIPIETSGDNVPPPV 164

Query: 104 MTGFKELGLCNELAEAVEEMGIFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPL 163
            T F E+ L   L   +       P+ +    IP LLE ++++  +  G  +  A+  P+
Sbjct: 165 NT-FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPI 224

Query: 164 IQNLKRDGKIY---GTRSKHPRAFVLCSTVQLSEEVFYMARFISEYRQLETARDNGCGEL 223
           I  + +D  +    G+R+ +P A +L  T +L+ ++   A+  S    ++     G   +
Sbjct: 225 ISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPI 284

Query: 224 QLQKSASDVSIGLLIGTPAEVSKLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILT 283
             Q    +  + +L+ TP  ++ L+E  RV    I++L LDE D M  +GF P I+KI+ 
Sbjct: 285 NQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 344

Query: 284 SV-RPCNEKCQSIVLTSTLIKMLHEQHSSLVES---LKRGDAGEVTAMLLE-----IEEE 343
            +  P     Q+++ ++T  + +    +  + +   L  G  G  T ++++     ++ +
Sbjct: 345 QMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSD 404

Query: 344 EAFHLMESPDTLKCKLADAVESLRAST 355
           +  HLM   D L  +  + ++  +A T
Sbjct: 405 KRSHLM---DLLHAQRENGIQGKQALT 421

[Close]

BLAST of CcUC08G151220 vs. TAIR 10
Match: AT2G47330.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 2.6e-14
Identity = 47/215 (21.86%), Postives = 102/215 (47.44%), Query Frame = 0


Query: 103 FKELGLCNELAEAVEEMGIFAPSELHCVGIPALLEKKNVVLGSLYGPERALAYLLPLIQN 162
           F++ G  +++  A+++     P+ + C  +P +L  ++V+  +  G  +  A++LP+I +
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289

Query: 163 LKRDGKIYGTRSKHPRAFVLCSTVQLSEEVFYMARFISEYRQLETARDNGCGELQLQKSA 222
           +    ++   R + P   +   T +L+ ++F  A+  S+   L  +   G      Q   
Sbjct: 290 IMDQPEL--QRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKE 349

Query: 223 SDVSIGLLIGTPAEVSKLIEEGRVVPDEIKYLVLDELDSMFGLGFGPDIKKILTSVRPCN 282
                 +++ TP  +  +++   +      YLVLDE D MF LGF P ++ I+  +RP  
Sbjct: 350 LKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDR 409

Query: 283 EKCQSIVLTSTLIKMLHEQHSSLVESLKRGDAGEV 318
              Q+++ ++T+   + +    ++    R   GEV
Sbjct: 410 ---QTLLFSATMPWKVEKLAREILSDPIRVTVGEV 439

The following BLAST results are available for this feature:

BLAST of CcUC08G151220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886391.1	1.2e-170	88.30	DEAD-box ATP-dependent RNA helicase 39-like [Benincasa hispida]	[more]
XP_008456722.1	5.0e-153	80.67	PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis melo] >KAA003162...	[more]
XP_004141005.1	5.5e-152	78.99	DEAD-box ATP-dependent RNA helicase 39 [Cucumis sativus] >KGN46104.1 hypothetica...	[more]
XP_022959642.1	3.7e-148	77.03	DEAD-box ATP-dependent RNA helicase 39-like [Cucurbita moschata]	[more]
KAG6602207.1	1.1e-147	77.30	DEAD-box ATP-dependent RNA helicase 39, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of CcUC08G151220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56X76	3.7e-42	34.62	DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 P...	[more]
Q5VRY0	1.2e-40	34.21	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q55804	1.0e-15	25.13	RNA helicase CrhR OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=...	[more]
P42305	1.7e-15	24.81	ATP-dependent RNA helicase DbpA OS=Bacillus subtilis (strain 168) OX=224308 GN=d...	[more]
Q0DVX2	1.7e-15	25.00	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of CcUC08G151220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLY8	2.4e-153	80.67	DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C4L0	2.4e-153	80.67	DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A0A0KB87	2.7e-152	78.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052790 PE=4 SV=1	[more]
A0A6J1H541	1.8e-148	77.03	DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JT03	6.8e-148	76.76	DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of CcUC08G151220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09730.1	2.6e-43	34.62	RH39	[more]
AT5G14610.2	1.6e-16	25.68	DEAD box RNA helicase family protein	[more]
AT4G34910.1	2.7e-16	29.06	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G42520.1	2.0e-14	22.32	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G47330.1	2.6e-14	21.86	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein	SMART	SM00517	poly_2	coord: 290..353 e-value: 1.1E-4 score: 24.5
IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein	PFAM	PF00658	PABP	coord: 305..348 e-value: 9.3E-8 score: 32.1
IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein	PROSITE	PS51309	PABC	coord: 270..355 score: 9.396841
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 120..327 e-value: 0.0016 score: 26.4
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 132..312 score: 17.305763
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 132..296 e-value: 6.0E-17 score: 62.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 60..309 e-value: 3.0E-33 score: 117.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 99..298
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 72..352
None	No IPR available	PANTHER	PTHR24031:SF694	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE ISOFORM X1	coord: 72..352
IPR036053	PABC (PABP) domain	SUPERFAMILY	63570	PABC (PABP) domain	coord: 297..354

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G151220.1	CcUC08G151220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902775	mitochondrial large ribosomal subunit assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding