CcUC08G150960 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G150960
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	U6 snRNA-associated Sm-like protein LSm3
Location	CicolChr08: 19170291 .. 19172730 (-)
RNA-Seq Expression	CcUC08G150960
Synteny	CcUC08G150960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGACCCCAAAACCGACGACTGTGGGAATCGGAAAACTCATAAACCCCACTCTTCACTTTGTGATTTCAGAGCTTCCAACACACCGAAAATGGCGACCGAAGAAGAAAGCACTGTCAAGGAGCCATTGGATCTCATAAGGTTGAGTCTTGACGAACGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGTACATCCTCCTTCATTACTTTTTTTTTTTTTTTTTCCTGTTTCTTTTCTCTAATTACGTTGTCTCTCTATCTCTCTATTTACCCCTTTAATAGAATGGCCCCATTGTTGGTTTATCTAGTGATTTTTTTTTTCTTTCGGTCAAATGAATATCCTGGAGAATTAGGGTTTTGTAATCGTTTGAGTTTCTTGATGGGGTTCCCTTGAAATTTGTTTACACTCATTTTCTTGGAAAAAAGGCTACACTTTAGTTGCTCCCAGTAACCCATTAATCTTTCTTCTATTGAGTTTTTGCGTTTGGGATGGGGCAGGGGCTGGTTTCGAACTTCTCTATTTTTGCGGTAATGAAATTGGATGAATCCGGAAAAAGTGCCCTAACGGTGAAAAGTGTCAAAGTCAGAGATCTCTGCTCTTACCCTTTGGAAATTTAGTTGAACGACGACTGTTTTAGCATGGTCTGCTTCTGATTATCTACCGATATGTTCCATTGTGAATGTGATTAACAGAGACCCCAAATATTACAAATATTTAACGAATAGGTCAATTGTTTTAGCTTAAGATGTTGATTATGATTAGTAGCTGATCTGTCTATTGCATTTCTTTTTAGTTTTGAGATGCTATTGTGGATGGAAAATTTTCAGCTTTCATTAAAATGTCTTTTCATTTTTATCTTTGATTACTGAGATTTTCCTTTCCTGGAGTTTTAACTGCTTTCTGTTGCTTGCTGTCATGTGTTGCAGGCTTATGATCAGCATCTTAATATGATTCTAGGTGACGTTGAAGAAATTGTTACAACAGTAGAAATTGATGATGAGACTTATGAAGAAATTGTTCGGGTATGCCTGTTTTCTTAATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCTCTCTCAAGGGTACGGGAATTATTCATAGAAAGAGAGTTTGCCAAAAATTTAAGGAAAAAAACGAGTCCTGCATTGGAGTTGTTTGTAACTCTGTACCAATCTTTGTGGTTAACTCGAATGTAGTAGAGTTAAATAGTGTTCCTAAGAGAATAGTCGAGGTGGGCATAAGTTGGTTGGGATACCATGCATTTAAAAAAAAAGTCTTGGTGTTTAAGTTGAAGCATTCGGCTCCATGCTGTAAAACAAACGTGTACTACATACTCAGTGTCCATTTCATAAGCACTTAATTTACCACCATGACTAGAGAAAACTACCCTGCAAAAGATAGTTTTGAATAAATGGCTAAGAAGTAAAAAAGGAGATATAGTGTCAATAAATGGATAAGAGGTCATGGATTCAATCCATGGTGGCTACCTATCTAAGAATCAATATCCTATGAGTTTATTTGACACCCAAATGTTGTAGGATCAGATGGGTTGTCTTGTGACATTAGTCGAAATGCACATAAGTTGGTCTAGACACTCACGGATAAAATATAGATATATATAGTTTTGAACATTTGAATACTATAAGTCTGTCTCATTTTCAGGTAAATCAGGTGAGTTTTCAGAAATGAACACTGGATTACCATTGTACAAAGTGTTTTTAAAGGAATTACGGAAATAAATACCTATTGCTCAAAAGTTTGAGTTTAATACCAAAGGAATGAAAGAGAAGAAAAATGCCTTGTGCCCCTCAAGCTAGTTGATAGAGTCCATCCCATACTTGATATGTTAACTCCAGTATTTCTCTTTTGCATACAGTATACTTCAATTGAAATTTTACGTACTTGTCTATTTTCCTTTCCAGACATCCAGGCGTACTGTCCCATTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAACTAAACTATCAGTCAATTGCGTGCATCCTTAATGGGAACTTCTTATTCATCTTCTCTACCAAATTGACTGGAGCTGGAATTACTGTCAAGTACTCGACCCCGTTCATAGACTAGGCATTATCCTTGAATATGTTGTTCTATTACATAAACTAGTTAGTTTCGATATATTTGAGTCGTAATTGTAGTTTTTGACATTTTAATTGGCTGGACAAGTTGTATGCCTTCAGATTTTGAATGCAAGGCCAAGTACACGAAACTTGAAATTGTGCATCTAAGCCAATAGAGAATCAAGCTTCGCTCGGTTTCTTATCTGTTTTTCTTCGTCT

mRNA sequence

TTCGACCCCAAAACCGACGACTGTGGGAATCGGAAAACTCATAAACCCCACTCTTCACTTTGTGATTTCAGAGCTTCCAACACACCGAAAATGGCGACCGAAGAAGAAAGCACTGTCAAGGAGCCATTGGATCTCATAAGGTTGAGTCTTGACGAACGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGGGCTGGTTTCGAACTTCTCTATTTTTGCGGTAATGAAATTGGATGAATCCGGAAAAAGTGCCCTAACGGTGAAAAGTGTCAAAGCTTATGATCAGCATCTTAATATGATTCTAGGTGACGTTGAAGAAATTGTTACAACAGTAGAAATTGATGATGAGACTTATGAAGAAATTGTTCGGACATCCAGGCGTACTGTCCCATTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAACTAAACTATCAGTCAATTGCGTGCATCCTTAATGGGAACTTCTTATTCATCTTCTCTACCAAATTGACTGGAGCTGGAATTACTGTCAAGTACTCGACCCCGTTCATAGACTAGGCATTATCCTTGAATATGTTGTTCTATTACATAAACTAGTTAGTTTCGATATATTTGAGTCGTAATTGTAGTTTTTGACATTTTAATTGGCTGGACAAGTTGTATGCCTTCAGATTTTGAATGCAAGGCCAAGTACACGAAACTTGAAATTGTGCATCTAAGCCAATAGAGAATCAAGCTTCGCTCGGTTTCTTATCTGTTTTTCTTCGTCT

Coding sequence (CDS)

ATGGCGACCGAAGAAGAAAGCACTGTCAAGGAGCCATTGGATCTCATAAGGTTGAGTCTTGACGAACGTATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGCGGCAAACTCCATGGGCTGGTTTCGAACTTCTCTATTTTTGCGGTAATGAAATTGGATGAATCCGGAAAAAGTGCCCTAACGGTGAAAAGTGTCAAAGCTTATGATCAGCATCTTAATATGATTCTAGGTGACGTTGAAGAAATTGTTACAACAGTAGAAATTGATGATGAGACTTATGAAGAAATTGTTCGGACATCCAGGCGTACTGTCCCATTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAA

Protein sequence

MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSALTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

Homology

[Close]

BLAST of CcUC08G150960 vs. NCBI nr
Match: BAJ88101.1 (predicted protein, partial [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 174.5 bits (441), Expect = 5.8e-40
Identity = 94/125 (75.20%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSA 60
           MA+EE+  VKEPLDLIRLSLDERIYVKLRSDRELRGKLH L  N  I +  K  E     
Sbjct: 5   MASEEDVAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHDL--NGKIISASKYTEED--- 64

Query: 61  LTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 120
            T+  + AYDQHLNMILGDVEEIVT++EIDDETYEEIVRTS+RT+P+LFVRGDGVILVSP
Sbjct: 65  -TLNVLPAYDQHLNMILGDVEEIVTSIEIDDETYEEIVRTSKRTIPYLFVRGDGVILVSP 123

Query: 121 PLRTV 126
           PLRTV
Sbjct: 125 PLRTV 123

[Close]

BLAST of CcUC08G150960 vs. NCBI nr
Match: XP_022133461.1 (sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022952859.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022990502.1 sm-like protein LSM3A [Cucurbita maxima] >XP_022993940.1 sm-like protein LSM3A [Cucurbita maxima] >XP_023548062.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_023551427.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_038886358.1 sm-like protein LSM3A [Benincasa hispida] >KAG6578889.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032866.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6602182.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173.7 bits (439), Expect = 9.9e-40
Identity = 97/125 (77.60%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSA 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  LTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 120
                  AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP
Sbjct: 61  -------AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 97

Query: 121 PLRTV 126
           PLRTV
Sbjct: 121 PLRTV 97

[Close]

BLAST of CcUC08G150960 vs. NCBI nr
Match: XP_042464523.1 (sm-like protein LSM3A isoform X1 [Zingiber officinale])

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-39
Identity = 97/138 (70.29%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVS--------------NFS 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHG                 N +
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGTEKKKIKGKKKRTQRRRNLN 60

Query: 61  IFAVMKLDESGKSALTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVP 120
           + A            + +  +AYDQHLNMILGDVEEI+TTVEIDDETYEEIVRT+RRTVP
Sbjct: 61  LSAPGAFRPPLSLLESRRRTQAYDQHLNMILGDVEEILTTVEIDDETYEEIVRTTRRTVP 120

Query: 121 FLFVRGDGVILVSPPLRT 125
           FLFVRGDGVILVSPPLRT
Sbjct: 121 FLFVRGDGVILVSPPLRT 138

[Close]

BLAST of CcUC08G150960 vs. NCBI nr
Match: XP_008441520.1 (PREDICTED: sm-like protein LSM3B [Cucumis melo] >KAA0054950.1 sm-like protein LSM3A [Cucumis melo var. makuwa] >TYK22739.1 sm-like protein LSM3A [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 4.9e-39
Identity = 96/125 (76.80%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSA 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  LTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 120
                  AYDQHLNMILGDVEE VTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP
Sbjct: 61  -------AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 97

Query: 121 PLRTV 126
           PLRTV
Sbjct: 121 PLRTV 97

[Close]

BLAST of CcUC08G150960 vs. NCBI nr
Match: KAG6517371.1 (hypothetical protein ZIOFF_020756 [Zingiber officinale])

HSP 1 Score: 170.6 bits (431), Expect = 8.4e-39
Identity = 93/131 (70.99%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSA 60
           MA+EEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH  +  +  +    +   G + 
Sbjct: 40  MASEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHISIRVWESYGGYHVVNHGGNV 99

Query: 61  LTVKSVK-------AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGD 120
                +        AYDQHLNMILGDVEEI+TTVEIDDETYEEIVRT++RTVPFLFVRGD
Sbjct: 100 FPRGLLSNLLWLKWAYDQHLNMILGDVEEIITTVEIDDETYEEIVRTTKRTVPFLFVRGD 159

Query: 121 GVILVSPPLRT 125
           GVILVSPPLRT
Sbjct: 160 GVILVSPPLRT 170

[Close]

BLAST of CcUC08G150960 vs. ExPASy Swiss-Prot
Match: Q9LMN4 (Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-38
Identity = 83/124 (66.94%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSA 60
           M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLH                     
Sbjct: 1   MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  LTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 120
                  A+DQHLNMILGDVEE++TT+EIDDETYEEIVRT++RTVPFLFVRGDGVILVSP
Sbjct: 61  -------AFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSP 96

Query: 121 PLRT 125
           PLRT
Sbjct: 121 PLRT 96

[Close]

BLAST of CcUC08G150960 vs. ExPASy Swiss-Prot
Match: Q9C6K5 (Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-37
Identity = 85/124 (68.55%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSA 60
           M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  LTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 120
                  A+DQHLNMILGDVEE +TTVEIDDETYEEIVRT++RT+ FLFVRGDGVILVSP
Sbjct: 61  -------AFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFVRGDGVILVSP 96

Query: 121 PLRT 125
           PLRT
Sbjct: 121 PLRT 96

[Close]

BLAST of CcUC08G150960 vs. ExPASy Swiss-Prot
Match: Q32PE9 (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-31
Identity = 71/117 (60.68%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSALTVKSV 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LH                           
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLH--------------------------- 71

Query: 67  KAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 124
            AYDQHLNMILGDVEE VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  -AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CcUC08G150960 vs. ExPASy Swiss-Prot
Match: P62310 (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-31
Identity = 71/117 (60.68%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSALTVKSV 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LH                           
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLH--------------------------- 71

Query: 67  KAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 124
            AYDQHLNMILGDVEE VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  -AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CcUC08G150960 vs. ExPASy Swiss-Prot
Match: P62311 (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-31
Identity = 71/117 (60.68%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSALTVKSV 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LH                           
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLH--------------------------- 71

Query: 67  KAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 124
            AYDQHLNMILGDVEE VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  -AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CcUC08G150960 vs. ExPASy TrEMBL
Match: A0A287G9K8 (U6 snRNA-associated Sm-like protein LSm3 OS=Hordeum vulgare subsp. vulgare OX=112509 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.4e-41
Identity = 95/125 (76.00%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSA 60
           MA+EE+  VKEPLDLIRLSLDERIYVKLRSDRELRGKLH L  N  I +  K  E     
Sbjct: 1   MASEEDVAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHDL--NGKIISASKYTEED--- 60

Query: 61  LTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 120
            T+K + AYDQHLNMILGDVEEIVT++EIDDETYEEIVRTS+RT+P+LFVRGDGVILVSP
Sbjct: 61  -TLKVLPAYDQHLNMILGDVEEIVTSIEIDDETYEEIVRTSKRTIPYLFVRGDGVILVSP 119

Query: 121 PLRTV 126
           PLRTV
Sbjct: 121 PLRTV 119

[Close]

BLAST of CcUC08G150960 vs. ExPASy TrEMBL
Match: F2CZ30 (U6 snRNA-associated Sm-like protein LSm3 (Fragment) OS=Hordeum vulgare subsp. vulgare OX=112509 GN=LSM3 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.8e-40
Identity = 94/125 (75.20%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSA 60
           MA+EE+  VKEPLDLIRLSLDERIYVKLRSDRELRGKLH L  N  I +  K  E     
Sbjct: 5   MASEEDVAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHDL--NGKIISASKYTEED--- 64

Query: 61  LTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 120
            T+  + AYDQHLNMILGDVEEIVT++EIDDETYEEIVRTS+RT+P+LFVRGDGVILVSP
Sbjct: 65  -TLNVLPAYDQHLNMILGDVEEIVTSIEIDDETYEEIVRTSKRTIPYLFVRGDGVILVSP 123

Query: 121 PLRTV 126
           PLRTV
Sbjct: 125 PLRTV 123

[Close]

BLAST of CcUC08G150960 vs. ExPASy TrEMBL
Match: A0A6J1JZX1 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita maxima OX=3661 GN=LOC111489789 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.8e-40
Identity = 97/125 (77.60%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSA 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  LTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 120
                  AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP
Sbjct: 61  -------AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 97

Query: 121 PLRTV 126
           PLRTV
Sbjct: 121 PLRTV 97

[Close]

BLAST of CcUC08G150960 vs. ExPASy TrEMBL
Match: A0A6J1FGZ1 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita moschata OX=3662 GN=LOC111445386 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.8e-40
Identity = 97/125 (77.60%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSA 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  LTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 120
                  AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP
Sbjct: 61  -------AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 97

Query: 121 PLRTV 126
           PLRTV
Sbjct: 121 PLRTV 97

[Close]

BLAST of CcUC08G150960 vs. ExPASy TrEMBL
Match: A0A6J1BV62 (U6 snRNA-associated Sm-like protein LSm3 OS=Momordica charantia OX=3673 GN=LOC111006032 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.8e-40
Identity = 97/125 (77.60%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSA 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  LTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 120
                  AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP
Sbjct: 61  -------AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 97

Query: 121 PLRTV 126
           PLRTV
Sbjct: 121 PLRTV 97

[Close]

BLAST of CcUC08G150960 vs. TAIR 10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 158.3 bits (399), Expect = 4.0e-39
Identity = 83/124 (66.94%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSA 60
           M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLH                     
Sbjct: 1   MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  LTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 120
                  A+DQHLNMILGDVEE++TT+EIDDETYEEIVRT++RTVPFLFVRGDGVILVSP
Sbjct: 61  -------AFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSP 96

Query: 121 PLRT 125
           PLRT
Sbjct: 121 PLRT 96

[Close]

BLAST of CcUC08G150960 vs. TAIR 10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 156.4 bits (394), Expect = 1.5e-38
Identity = 85/124 (68.55%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGLVSNFSIFAVMKLDESGKSA 60
           M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  LTVKSVKAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 120
                  A+DQHLNMILGDVEE +TTVEIDDETYEEIVRT++RT+ FLFVRGDGVILVSP
Sbjct: 61  -------AFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFVRGDGVILVSP 96

Query: 121 PLRT 125
           PLRT
Sbjct: 121 PLRT 96

The following BLAST results are available for this feature:

BLAST of CcUC08G150960 vs. NCBI nr


Match Name	E-value	Identity	Description
BAJ88101.1	5.8e-40	75.20	predicted protein, partial [Hordeum vulgare subsp. vulgare]	[more]
XP_022133461.1	9.9e-40	77.60	sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3...	[more]
XP_042464523.1	1.3e-39	70.29	sm-like protein LSM3A isoform X1 [Zingiber officinale]	[more]
XP_008441520.1	4.9e-39	76.80	PREDICTED: sm-like protein LSM3B [Cucumis melo] >KAA0054950.1 sm-like protein LS...	[more]
KAG6517371.1	8.4e-39	70.99	hypothetical protein ZIOFF_020756 [Zingiber officinale]	[more]

BLAST of CcUC08G150960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMN4	5.7e-38	66.94	Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1	[more]
Q9C6K5	2.1e-37	68.55	Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1	[more]
Q32PE9	1.3e-31	60.68	U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3	[more]
P62310	1.3e-31	60.68	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV...	[more]
P62311	1.3e-31	60.68	U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 S...	[more]

BLAST of CcUC08G150960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A287G9K8	7.4e-41	76.00	U6 snRNA-associated Sm-like protein LSm3 OS=Hordeum vulgare subsp. vulgare OX=11...	[more]
F2CZ30	2.8e-40	75.20	U6 snRNA-associated Sm-like protein LSm3 (Fragment) OS=Hordeum vulgare subsp. vu...	[more]
A0A6J1JZX1	4.8e-40	77.60	U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FGZ1	4.8e-40	77.60	U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1BV62	4.8e-40	77.60	U6 snRNA-associated Sm-like protein LSm3 OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of CcUC08G150960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21190.1	4.0e-39	66.94	Small nuclear ribonucleoprotein family protein	[more]
AT1G76860.1	1.5e-38	68.55	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 14..120 e-value: 6.3E-7 score: 39.0
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 66..120 e-value: 8.2E-9 score: 35.0
None	No IPR available	GENE3D	2.30.30.100		coord: 2..122 e-value: 1.6E-26 score: 93.9
None	No IPR available	PANTHER	PTHR13110:SF13	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 66..125 coord: 1..41
IPR040002	U6 snRNA-associated Sm-like protein Lsm3	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 1..41
IPR040002	U6 snRNA-associated Sm-like protein Lsm3	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 66..125
IPR034105	Sm-like protein Lsm3	CDD	cd01730	LSm3	coord: 11..120 e-value: 3.15763E-47 score: 145.061
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 10..41
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 66..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G150960.1	CcUC08G150960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0033962	P-body assembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0000932	P-body
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding