CcUC08G150830 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G150830
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationCicolChr08: 19017434 .. 19021410 (-)
RNA-Seq ExpressionCcUC08G150830
SyntenyCcUC08G150830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTATTAAACGATTTTTTTTTTTTTTTTTTTTTTTTTACAATATCTAATGGTAAGTACATTTTATGTCAGTTAGTTGTGCTTGGCACTAATTACAATAATAAAGGTGTGTTTTTGGGGAAAGATAAAGTGTGAAACAACTCACTTTCTCCTCCTAAAATGGAGGTGGTGGAGATTTAGAGACAGGTTGCTTTGGCCAAGGTTTTCTGCCCTTCTTTTCATCCTTCAATGGTGGTTCAGATTCATCATCTCCATTTTCTTCTGCCGAGGCTGCTTTGCCAGGCTCACTTTTATAGGTGAATTATATATCGGCGCCGCCAATGCCAAGTGCGACGGGGGAGGAGGAGAAGGGTCAGCCACGGCGCTTGCGGTGGTTTTCGACGGTAACCTTAGAGCCATGGATGCTACCAAAATAGCCAAAATTAGAATATTGGCCGTCGAATGCCCCATTCTCACGATACAAACTAAGTTTCTTTTTTAGTAAATCTCTCCACCTACCTTTTAAAGGGATTTGTTTTCTAAAACTATATATTTTTTTAATAATATTTTAAAATATAAGATCGCTAATTTTATGACTTGGCAATAAGGTCAGCCAAAAAAACATTTCATACGATCATGGGTTGGATATATTTTATTGAGATATCTATAGGTATGACCTAAATTTGATTATGCTAGCGAATGTCCAATGACCTAGATTCTCAATTCTGCTGCCACATACCCCTTGTCAAACACTTTGGAAGATATGCTATTTATTTTAACTCATATTAAACAAAACAGCAAGAAGAAAGTTTTATAGAGCAATCTGATTGGAGCTTGCTTTTTGTGCATATGGCTGGAGTGTAACAGAAGAAATTTTAAACGATGAGAAGTTGCCTGCCCATCAATGGAAAGATATTATTTATCAGGCAGCTCAATGGTGTACCAAATCTAATCTTTTTCATGATTATAATATTTCTTGTATAGGTTTTAATTGGAAGGCTTTCCTCTAGACTTTCTCTTTTTGTGACTCGGACTTTGGGCCTTTCTGCCTTTGTATATTCTACTTCTATCAATATATTTTTGGATCGGAGCGTGATGAGGGCGGTAAGGATGTGTGAACCCTAGTTGAGATATCTGAGTGTGCCTACTGATCCAGTGACACTTAATTCTCTTTCCAAAAAAAAAAAAAAAAAAGAATGACCTAGATCTATAACCAACATTGGAAACAAACCTTTTGTTTACGTTGTTATAAATCATTGACCAACAATAACTTATCCATTCACGATCACATAGTCTCACCCATTGCGAATTGATAAGTCTCTATATGCTTTTTCATGTTCGGAAGAAGTCATAAGATCGCAAAATTTTAACAATGGGCAATAATTTGTATTTTTATAAAAATTGCAATGCGACTTAAAATTTCGTTTCAGTTCTCATCAATTTCCATGTGTGTGAACTCGAGACTGCAAATGTCTAAGGAGAATTTAATGTTGAATGGTGTTTTGTGACATAAGCAAAACGTTAGGATTCATTATTTTGAAAATCTAGATTATTTGACATTAAAAGCAACCAAATTTGGTTCTTCAACACAAAAACTCGATTTTCTTTTTATCATAGAAAAAAGAACAAAACAAGATAAAAATATGTATGATTTAATTTTTATACTTATATTTTTCCAAAATCCATATACATCAATACTTAAAAGTTTATTTTTTATTTTTATTTTTCTTTTAACAATTACATAAACAAAGAGGGATCAGTGAATATAGTGGGATATCTCAACTAGGTTGACATATTCTTATAAATTTCATTATATCCCAAGCTCAACAAAGAAACATAGCATTGAGATAAGGAAATTGTTAAAAAATACAAACAGAGCTAGAAATCAACTCATCACAAAAGTGAAAGAAAAGGACTAAAGGAAAGTCATATCCAGTTAAGGGCTATTTATGATATGTCATAATTAGAAAAGAGGTTCGAACAATACTTAAAAGATATTGAGTTTGCTTAATATGATTGGGTCATTTAGTTGCACTTAGTTCATAGATTATACTTGTTGAATGAAAATTTTGGATCAATCACAAATTGTCATGTCATTTCTTAAATTAATGTCAAAATTACAAACTATCACATTTGGGACAAATTAGAAATTGACATGTGTCCCAAATTAAAATGGAAGACATAAGTTGGTAAATTTTGATGATGCCACATGCTTTCGTCTTGACTGTTGGATTAAATAAAATAATGAAGTCCGATATGATATTATTATTTAGGTTAAAGTCCAATTGAACCCAAAAATAGGGTTAATTTAGCCAAAAGGTCAATTAATGCTCGAGGGCGAATTCCATAGACCAGTCAAGCCCAAACCCATAAAACCCACCTAAAAACTCTATGAATAGAGCAGTTGTCTTCATTTGGGGTTAAAAAAATTTACAAATTATCCCTACAATTAGAAAGATTACCACATTGGAAGACTAAAACTCTTTGGAATACAAACATTATTCCAAGACCCCAACTTCAAGAACATCCACGCACTTCACTCTCATACATCAAGCGTACGCATTCACCGCCCGGCACACTGTCACAATCTCAAGTCTTGAAAGTTCACCTCCAGATATGGGCAACATCAACAATGTGGTTTTGAACTCCTCCCCTACAAATAGTCTTGAATTGCTCTTCCATGAAGCTCAAGAACCCCAGCCAGTCATAACGAAGAGGTCAGAAAAAGTTGTGGATGATAATTTTGAAATACAATTCACTGAATGGCTAAAAGCAAACAATTTCTGTGTTGTATCCATTCCATCCAAGAGATAGTTATGAGCAATTCAGAAAGGAAAATAGGGGAACAGAGTTACCAAATGAAAATTCTCACTTGGAATATGAGAGCTTGGGCACGACTCAAAAACGTGCCATAATAAAGGGTCTAATTTCCTCGACAGCCCCAGATTTTGTCATCCTAACAGAAACTAAATTATCAAAGGTCACCTGCCACATTATCAAGTCCTGATGGAGCTTGATAAGTATAGATTTGGTTGTGGTTAATGCCAATAACTCTTCCGGAGGTATCATAATCATGTGAGACTCTCTTAACCATTTTGCAATAGAGGTTTTTTAAGGTAATTTTTCATTATCTGTAAAACTTATTAGAGTTGATGGCTTAACATGGTGGATATCTGGTATTTATGGGCTAGCCAATCGTAGAAATTGTAAATCTTTCTGGGATGAGCTTGATGATGTGTGTATTCTCTGTGGAGAATGCTGGATTCTTGCAGGTGACTTCAATGTATATCGTTGGTCCTTAGAAACTACTTCACCACATCCATCCAAATGCAATATGAAAAAGTTTAACTCCTACATCTTGAGGGCTGGCCTCATTGAACCAATTCTCGGTTAGAGCAGGCATATGCCAAACGTGAATACCACCGGAAGCCACTGGCAGAACACCTGGTAAAGAGACCCAATCTTGAGTGAAATTCAGATCAACGAATCCTACACCTAGTCAAACCTCCCTCACACCCCTACTCTGTCAAAGCTGGACAGGTTTTTATACTCCTTTGTCTGGGAAGAAAAATTCCAATCCCACTAGGTTCGAAGACTTATCCGAAATATTTTTGACCATTTCCCTATTCTTCTTGAATCGAAGTCTCTAAAATGGTCCCTTGCCCATTTAGATTTGATAATAGATGGCTTTCCAATAAAGACTTCATCCAATCTATTCAGAACAAATGAGGCCTTATCAATTTGAGTGGCTACCCAGGTTATGTCATTATGATGCCCTTGAAGGATTTAGCAAATCACTTTCGTGACTGGAACCAACATGTCTTCAAAAAGAACCAAAACAGAGCCATTGATATCTCCAAACAGATTGAGTACATTGACGCCAAAGAGGAAGCTGGAGATTTAAATGATACTGATCTATATCTTCGTACCTCCCTGAAAATAGAGCTACTAAACATATCCTTTATTAGAATCACAGAAATGGCAACAACTATGTAA

mRNA sequence

ATGATATTCATCATCTCCATTTTCTTCTGCCGAGGCTGCTTTGCCAGGCTCACTTTTATAGGTGAATTATATATCGGCGCCGCCAATGCCAAGTGCGACGGGGGAGGAGGAGAAGGGTCAGCCACGGCGCTTGCGGTGGTTTTCGACGGTAACCTTAGAGCCATGGATGCTACCAAAATAGCCAAAATTAGAATATTGGCCGTCGAATGCCCCATTCTCACGATACAAACTAAAGTTGATGGCTTAACATGGTGGATATCTGGTATTTATGGGCTAGCCAATCGTAGAAATTGTAAATCTTTCTGGGATGAGCTTGATGATGTGTGTATTCTCTGTGGAGAATGCTGGATTCTTGCAGGTGACTTCAATGCATATGCCAAACGTGAATACCACCGGAAGCCACTGGCAGAACACCTGGATTTAGCAAATCACTTTCGTGACTGGAACCAACATGTCTTCAAAAAGAACCAAAACAGAGCCATTGATATCTCCAAACAGATTGAGTACATTGACGCCAAAGAGGAAGCTGGAGATTTAAATGATACTGATCTATATCTTCGTACCTCCCTGAAAATAGAGCTACTAAACATATCCTTTATTAGAATCACAGAAATGGCAACAACTATGTAA

Coding sequence (CDS)

ATGATATTCATCATCTCCATTTTCTTCTGCCGAGGCTGCTTTGCCAGGCTCACTTTTATAGGTGAATTATATATCGGCGCCGCCAATGCCAAGTGCGACGGGGGAGGAGGAGAAGGGTCAGCCACGGCGCTTGCGGTGGTTTTCGACGGTAACCTTAGAGCCATGGATGCTACCAAAATAGCCAAAATTAGAATATTGGCCGTCGAATGCCCCATTCTCACGATACAAACTAAAGTTGATGGCTTAACATGGTGGATATCTGGTATTTATGGGCTAGCCAATCGTAGAAATTGTAAATCTTTCTGGGATGAGCTTGATGATGTGTGTATTCTCTGTGGAGAATGCTGGATTCTTGCAGGTGACTTCAATGCATATGCCAAACGTGAATACCACCGGAAGCCACTGGCAGAACACCTGGATTTAGCAAATCACTTTCGTGACTGGAACCAACATGTCTTCAAAAAGAACCAAAACAGAGCCATTGATATCTCCAAACAGATTGAGTACATTGACGCCAAAGAGGAAGCTGGAGATTTAAATGATACTGATCTATATCTTCGTACCTCCCTGAAAATAGAGCTACTAAACATATCCTTTATTAGAATCACAGAAATGGCAACAACTATGTAA

Protein sequence

MIFIISIFFCRGCFARLTFIGELYIGAANAKCDGGGGEGSATALAVVFDGNLRAMDATKIAKIRILAVECPILTIQTKVDGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKREYHRKPLAEHLDLANHFRDWNQHVFKKNQNRAIDISKQIEYIDAKEEAGDLNDTDLYLRTSLKIELLNISFIRITEMATTM
Homology
[Close]
BLAST of CcUC08G150830 vs. NCBI nr
Match: XP_011650214.1 (uncharacterized protein LOC105434766 [Cucumis sativus] >KAE8652281.1 hypothetical protein Csa_022537 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-07
Identity = 33/75 (44.00%), Postives = 40/75 (53.33%), Query Frame = 0 

Query: 50  GNLRAMDATKIAKIRILAVECPILTIQTKVDGLTWWISGIYGLANRRNCKSFWDELDDVC 109
           G L   D  K   I  +  E  I T   + DG  WWI+ +Y L NR   KSFW EL ++ 
Sbjct: 69  GILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSFWQELMNLA 128

Query: 110 ILCGECWILAGDFNA 125
             CG  W+LAGDFNA
Sbjct: 129 QTCGSNWLLAGDFNA 143

[Close]
BLAST of CcUC08G150830 vs. NCBI nr
Match: KAA0044449.1 (hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-05
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 80  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE 130
           +G +WW+S IYG A R+N   FW+EL+++  +C   WIL GDFN    +E
Sbjct: 705 NGASWWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKE 754

[Close]
BLAST of CcUC08G150830 vs. NCBI nr
Match: TYK29577.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-05
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 80  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE 130
           +G +WW+S IYG A R+N   FW+EL+++  +C   WIL GDFN    +E
Sbjct: 231 NGASWWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKE 280

[Close]
BLAST of CcUC08G150830 vs. NCBI nr
Match: TYJ99326.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-05
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 80  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE 130
           +G +WW+S IYG A R+N   FW+EL+++  +C   WIL GDFN    +E
Sbjct: 27  NGASWWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKE 76

[Close]
BLAST of CcUC08G150830 vs. NCBI nr
Match: XP_026450589.1 (uncharacterized protein LOC113350671 [Papaver somniferum])

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-05
Identity = 47/187 (25.13%), Postives = 74/187 (39.57%), Query Frame = 0 

Query: 39  GSATALAVVFDGNLRAMDATKIAKIRILAVECPILTIQTKVDGLTWWISGIYGLANRRNC 98
           GS+  + +++D N   ++     +   L+V C       K D   W ++ +YG  N    
Sbjct: 27  GSSGGMIILWDKNFMEVNDALTGEY-TLSVSC-----TNKSDNFNWMLTSVYGPNNTVER 86

Query: 99  KSFWDELDDVCILCGECWILAGDFNAYAKREYHR------KPLAEHLD------------ 158
            SFW+ELD  C L    W + GDFN   K + ++      + + +  D            
Sbjct: 87  ISFWEELDTACRLWNLPWCIGGDFNTVKKCDENKNCTKISRSMTQFNDFIEQHNLVDLPL 146

Query: 159 --------------LANHFRDWNQHVFKKNQNRAIDISKQIEYIDAKEEAGDLNDTDLYL 194
                         L    R WN+ VFK    R  DI  +I+ +D   E G L++ D + 
Sbjct: 147 KGSPSTALWLKLKALKEKLRVWNKEVFKHTHTRLNDILTEIQELDNMSEDGVLSEEDKHN 206

[Close]
BLAST of CcUC08G150830 vs. ExPASy TrEMBL
Match: A0A5A7TTA1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001820 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-06
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 80  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE 130
           +G +WW+S IYG A R+N   FW+EL+++  +C   WIL GDFN    +E
Sbjct: 705 NGASWWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKE 754

[Close]
BLAST of CcUC08G150830 vs. ExPASy TrEMBL
Match: A0A5D3E0F6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001830 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-06
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 80  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE 130
           +G +WW+S IYG A R+N   FW+EL+++  +C   WIL GDFN    +E
Sbjct: 231 NGASWWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKE 280

[Close]
BLAST of CcUC08G150830 vs. ExPASy TrEMBL
Match: A0A5D3BJP3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005410 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-06
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 80  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE 130
           +G +WW+S IYG A R+N   FW+EL+++  +C   WIL GDFN    +E
Sbjct: 27  NGASWWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKE 76

[Close]
BLAST of CcUC08G150830 vs. ExPASy TrEMBL
Match: M5WJ76 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.9e-06
Identity = 30/96 (31.25%), Postives = 45/96 (46.88%), Query Frame = 0 

Query: 81  GLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKREYHRKPLAEHLD 140
           G  WW+SGIYG   +R   SFW+EL D+   CG+ W L GDFN            +    
Sbjct: 422 GTDWWLSGIYGPCRQRERNSFWEELADLYGYCGDMWCLGGDFNVVR----FSAEKSNEGR 481

Query: 141 LANHFRDWNQHVFKKNQNRAIDISKQIEYIDAKEEA 177
           +    RD+N  + + N    I ++    + + +E A
Sbjct: 482 VTKSMRDFNDFIQETNLRDPILLNASFTWSNLRENA 513

[Close]
BLAST of CcUC08G150830 vs. ExPASy TrEMBL
Match: M5VS59 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa016504mg PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 0 

Query: 81  GLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFN 124
           G  WW+SGIYG   +R   SFW+EL D+   CG+ W L GDFN
Sbjct: 86  GTDWWLSGIYGPCRQRERNSFWEELADLYGFCGDKWCLGGDFN 128

The following BLAST results are available for this feature:
BLAST of CcUC08G150830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011650214.11.7e-0744.00uncharacterized protein LOC105434766 [Cucumis sativus] >KAE8652281.1 hypothetica... [more]
KAA0044449.11.6e-0546.00hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa][more]
TYK29577.11.6e-0546.00LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYJ99326.11.6e-0546.00LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
XP_026450589.12.0e-0525.13uncharacterized protein LOC113350671 [Papaver somniferum][more]
BLAST of CcUC08G150830 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC08G150830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TTA17.6e-0646.00DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3E0F67.6e-0646.00LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3BJP37.6e-0646.00LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
M5WJ769.9e-0631.25Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=... [more]
M5VS591.3e-0553.49Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=... [more]
BLAST of CcUC08G150830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 34..183
e-value: 1.2E-6
score: 30.5
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 70..149

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G150830.1CcUC08G150830.1mRNA