CcUC08G150720 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G150720
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr08: 18943308 .. 18946091 (-)
RNA-Seq Expression	CcUC08G150720
Synteny	CcUC08G150720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGTGAAATGGCCTTTGTTTTAGTTGCATTAACCCTCTCTTTTAGCTTTCCAATTCTCTCCACATCCGCCGCTCACCCTCACCCACTGCCTTCCCTTTATCACACAAAGATTGTTCCTCTTCCTCCGCCGCCACCGCCGTCACTTTCCCCCTATCAATATGAACTGCAAGCAAGGAGGAGGAGAAGGCGACTACGTTCTCCGCCACCGCCACCGCCGCCCAAGTTCCAGTGGCCGAGAAGGTCCACCCGTAGATCTCCCCCACCTCCTTTCTAACACACATTACTACACTGTTTGAAAGCATCACAAAGGTAAACTCGTTGGCTTTTGTTCTTTTGTTGAAGATTTTAGTTAGTGGGGTTTGGAATAAAATGGCTGCTCCTAATTAATTGCATTCCATGTTAGTTTACATTTACGTTATTTATTTTATTTATTTTTGGTAAAACAAGTGGAGTATGCTTAGTGTCACAATCGCAACTTTGCGTCTCGCTAAACGATTGTGCGGCACTTGTTCTAGCTCGCGAACAAGTCAGCCTGATTAAATTTCGATCGCCTACAGCACATCGAGTGCCTCTCGTAACCTCCACCCCGTTTCGAGAGAAAATGGTTTTAGAAAACGAATTAGAGGAAAATGTTTTTGCAAACGTTTGGAAGCATGTTTGAGAAATTAGAATATGTTAGTAAGACTAGAAAGCAAAAAGGGACAACAACGGCTTTATAGCTCACAACTCTGAATATGAGGATTTGATGGTTAGTTTCACCCCCATATAGTACATTCTGAACAATTGTGGAATTATCACCCTTGCACATGCAAAGTGATGAGCGGTCACTTACAAAGAAAAGTACTAAGAAAGTAAACTAACTAGTAAAATAAAGTACATAACATGAAAGCATGATAAAAAGGGGTCGAGGCGAGCATGCGGCCACGGGCAACGCGCCCTGGACAAGCATGACCCTGACACTGAGTATCACATAAATTTTTAAAATATATATTTATGAGAATTTGCAATGGGTACCAAATCCAAAATGTATAATTAGGGGCGTACCTTCAATATATGAAAAATTGCATATGTGATAGATTCTCAAATTTAAAATTTCACTTATTTCGTATTCCAATTTTCCCCTTTTAACAAATCCACGTCTTTTGGTATATCAGTCAACTAATATACCACATTTAAAGTATATCAGTTGTATATTCTTTGCATTGATTTGTATACTTTTTGTATTTTTTGTTTGCAGCAATATGAGTTATTACTCACTTTAATTTTTGTATTTGCATTTTTTCCCTAGTTTTTTTTTTTTTTTTTTTCATTTTTAAATGAGTTTGTTTCTTTCATTTTTAAGTACAAATATACAATAAGCTGGGGAGATTCAACATAAAACTCACTAACACTCAGTTTAGTACTAGTATACTCACCTTGACAATTTGGGTGTGTTTGGAATAACTAGATAAAAAAGAAAGTATTTTTCAAACAAATTACTTTTATGATTTTTTTAAAACACCTAAATAATCAGTCATTTTCAACTGTCAATAGCATATCAAGTGTATCAAATGTATCAAGTGTTTATCAATAGTGTATTAAGTGTGTATCAAGTGTCTATTAATAGTGTATTAAGTGTGTATAAGTAGTGTGTATAATGCGTATACTAGTAGTGTATCAAGTGTATCAAGGATATACGTATATCAAGCGTATCAAATGTGTATCAATAGTGTCTTTAATGTATATCAATAGTGCATCAGGGGTATCAAAGGGTATCAGGTGTATTACGTGGGTTGGGCTTTTTTTGCTATTTTTGCAAAAGGAATAAGTTTGGGCAATGGGCCTAATTCTTTAAACTTATTTTGTCAAATCTTAAAGAAGCTCTATATTTATCTAATAGTATTAGAGAGTATGAAATTCAATCGGGGATTTGATCCAACTAAAAAATGGTAAAGGCATGTTAAAAATTTTACATTGGAAAAATGGGGAGAAGTAATCATCATCAATTAGCAGTTAAGGTGGTGATAGTGTCCTCCCAAAAGAAGAGCTTGATTCTTGGAAAATATCCTTGAATATTCTATTGTTGCGCGCAGTCCATATGGATCACAAAATTGCTATGATGAAATTACCACTAAGCAGATGATTGACTCTTTTCTTTGAAAGAGATAAAGAACTAAGATCCTAATTCAACCAACAAATTTTCAATCCTATAAATAGAAACAATATTAGAAGGTTGATATACTATTTAAATTTATCATAAACCATCAATTTTAAATTTTATGTCATATTTTAACTATAATTTCATATTAAATTACTAGCTCTTTATGTTATTCTCACATTTGTCTATGGATGTATTTTCTCTTCTCTTTTCTATAGAAAAGGGAAAATCTGATTAAATTCATATCTCTTGCAGAAAGGAAGATTAGTCTTTGCTTTGCCTTCGCTTTTATCACCATAAGCAGCCGTAAGATACTGGGAGTTTCGCTATTTTCAAGTTTCAATTATGGTTAAGTGTTCGATTTTCTTTTATCAGCTTCAATTATCATTTTTTTTTTTTATAATGACAAGCAGGTCTATCGCCGATAAGCAGGGTGATAGAAGTATATCATCCTCATATACTTCTATTTTTGTCATATGTAAATCTTCTAAATGAGCTATTTGCTTTAATAACATTCCAGTTTTTAAAATTGAGCAATCTTAATAGCAAATTCAATTCCAATAGCCATGAACTTCCTATGGGGAGTAAAAAAATTGAAGACCCCTGTTTCAACAAAAAGCTGGCAGCACAACAAAATGGGCT

mRNA sequence

ATGGACTTTCCAATTCTCTCCACATCCGCCGCTCACCCTCACCCACTGCCTTCCCTTTATCACACAAAGATTGTTCCTCTTCCTCCGCCGCCACCGCCGTCACTTTCCCCCTATCAATATGAACTGCAAGCAAGGAGGAGGAGAAGGCGACTACGTTCTCCGCCACCGCCACCGCCGCCCAAGTTCCAGTGGCCGAGAAGGTCCACCCAAAGGAAGATTAGTCTTTGCTTTGCCTTCGCTTTTATCACCATAAGCAGCCGTAAGATACTGGGAGTTTCGCTATTTTCAAGTTTCAATTATGGTTAAGTGTTCGATTTTCTTTTATCAGCTTCAATTATCATTTTTTTTTTTTATAATGACAAGCAGGTCTATCGCCGATAAGCAGGGTGATAGAAGTATATCATCCTCATATACTTCTATTTTTGTCATATGTAAATCTTCTAAATGAGCTATTTGCTTTAATAACATTCCAGTTTTTAAAATTGAGCAATCTTAATAGCAAATTCAATTCCAATAGCCATGAACTTCCTATGGGGAGTAAAAAAATTGAAGACCCCTGTTTCAACAAAAAGCTGGCAGCACAACAAAATGGGCT

Coding sequence (CDS)

ATGGACTTTCCAATTCTCTCCACATCCGCCGCTCACCCTCACCCACTGCCTTCCCTTTATCACACAAAGATTGTTCCTCTTCCTCCGCCGCCACCGCCGTCACTTTCCCCCTATCAATATGAACTGCAAGCAAGGAGGAGGAGAAGGCGACTACGTTCTCCGCCACCGCCACCGCCGCCCAAGTTCCAGTGGCCGAGAAGGTCCACCCAAAGGAAGATTAGTCTTTGCTTTGCCTTCGCTTTTATCACCATAAGCAGCCGTAAGATACTGGGAGTTTCGCTATTTTCAAGTTTCAATTATGGTTAA

Protein sequence

MDFPILSTSAAHPHPLPSLYHTKIVPLPPPPPPSLSPYQYELQARRRRRRLRSPPPPPPPKFQWPRRSTQRKISLCFAFAFITISSRKILGVSLFSSFNYG

Homology

[Close]

BLAST of CcUC08G150720 vs. NCBI nr
Match: KAG6578901.1 (hypothetical protein SDJN03_23349, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 48/89 (53.93%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 3   FPILSTSAAHPHPLPSLYHTKIVPLP--------------------PPPPPSLSPYQYEL 62
           F I + SAA  HP PSLYH +IVPLP                    PPPPP L P+QYEL
Sbjct: 14  FSIPAASAARLHPPPSLYHARIVPLPPPPPPRFPIPSISAARPHPLPPPPPPLLPHQYEL 73

Query: 63  QARRRRRRLRSPPPPPPPKFQWPRRSTQR 72
            A  RRRR RSPPPPPPP+FQWP+R T++
Sbjct: 74  LA--RRRRFRSPPPPPPPRFQWPKRHTRK 100

[Close]

BLAST of CcUC08G150720 vs. NCBI nr
Match: KGN54132.2 (hypothetical protein Csa_021653 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MDFPILSTSAAHPHPLPSLYHTKIVPLPPPPPPSLSP-YQYELQARRRRRRLR 53
          + FPILSTSAA  HPLPSLYHT+IVPLP P P SL P Y++ELQ RRRRRR+R
Sbjct: 13 LSFPILSTSAAQLHPLPSLYHTRIVPLPQPSPSSLLPSYEFELQVRRRRRRVR 65

The following BLAST results are available for this feature:

BLAST of CcUC08G150720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578901.1	1.4e-12	53.93	hypothetical protein SDJN03_23349, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN54132.2	1.5e-09	73.58	hypothetical protein Csa_021653 [Cucumis sativus]	[more]

BLAST of CcUC08G150720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC08G150720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC08G150720 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G150720.1	CcUC08G150720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen