Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTCATAACCCCCTTTTCGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTTGGTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATTTCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGCCACCGTCGTTGCCACTGCAGGAATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCTACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTCATTCCCCCACCGGCGTCACCACTGTCAGTGAAGAAGCTTTACATATCCCAGGCAAGGCGGTCAGTGCCGCCGCCACCGCCAAAGGAGCAACCGCCATATCCTTGGGGGTGGACCATCCCTAGATCGCCCCCACCTCCTTTCTAA
mRNA sequence
ATGGAGTCTCATAACCCCCTTTTCGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTTGGTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATTTCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGCCACCGTCGTTGCCACTGCAGGAATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCTACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTCATTCCCCCACCGGCGTCACCACTGTCAGTGAAGAAGCTTTACATATCCCAGGCAAGGCGGTCAGTGCCGCCGCCACCGCCAAAGGAGCAACCGCCATATCCTTGGGGGTGGACCATCCCTAGATCGCCCCCACCTCCTTTCTAA
Coding sequence (CDS)
ATGGAGTCTCATAACCCCCTTTTCGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTTGGTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATTTCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGCCACCGTCGTTGCCACTGCAGGAATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCTACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTCATTCCCCCACCGGCGTCACCACTGTCAGTGAAGAAGCTTTACATATCCCAGGCAAGGCGGTCAGTGCCGCCGCCACCGCCAAAGGAGCAACCGCCATATCCTTGGGGGTGGACCATCCCTAGATCGCCCCCACCTCCTTTCTAA
Protein sequence
MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPWSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQELGRPIVPYYPFKFLPPPSRKRPYPPSYHVIPPPASPLSVKKLYISQARRSVPPPPPKEQPPYPWGWTIPRSPPPPF
Homology
BLAST of CcUC08G150700 vs. NCBI nr
Match:
XP_008466986.1 (PREDICTED: extensin-3-like, partial [Cucumis melo])
HSP 1 Score: 156.8 bits (395), Expect = 1.6e-34
Identity = 90/131 (68.70%), Postives = 100/131 (76.34%), Query Frame = 0
Query: 1 MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPWSLLPSPPP---TTRPIVPYYPFI 60
MESHNP+FVFFL II+PLLSLNLPSNFAAH+I P SLL SPPP TRPIVPY+PFI
Sbjct: 1 MESHNPIFVFFLFIILPLLSLNLPSNFAAHYI---PSSLL-SPPPMPSITRPIVPYHPFI 60
Query: 61 FPPPPSKKTHKHTSRPPPSLPLQELGRPIVPYYPFKFLPPPSRKRPYPP-SYHVIPPPAS 120
FPPP K +HT PPP P Q+L RPIVPYYP+KF PPPSRK+ PP SYH PPP
Sbjct: 61 FPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQANPPLSYHAFPPPTL 120
Query: 121 PLSVKKLYISQ 128
PL KKLY+S+
Sbjct: 121 PLPAKKLYMSE 127
BLAST of CcUC08G150700 vs. NCBI nr
Match:
KAA0058946.1 (extensin-3-like [Cucumis melo var. makuwa])
HSP 1 Score: 134.8 bits (338), Expect = 6.4e-28
Identity = 80/124 (64.52%), Postives = 91/124 (73.39%), Query Frame = 0
Query: 16 MPLLSLNLPSNFAAHHIHPSPWSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP 75
MPLLS NLPSNFA H+I PS S PS PPTT+PIVPY+PFI PPP KKT KHT P
Sbjct: 1 MPLLSSNLPSNFATHYIPPSLLS-PPSMPPTTKPIVPYHPFII-PPPFKKTSKHT-WSPS 60
Query: 76 SLPLQELGRPIVPYYPFKFLPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARRSVPP 135
S P +ELGRPIVPYYP+KFLPPP RK + PP YHV PP P KKL++S AR++ P
Sbjct: 61 SRPQKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPA 120
Query: 136 PPPK 139
PPP+
Sbjct: 121 PPPE 121
BLAST of CcUC08G150700 vs. NCBI nr
Match:
TYK10982.1 (extensin-3-like [Cucumis melo var. makuwa])
HSP 1 Score: 134.8 bits (338), Expect = 6.4e-28
Identity = 80/124 (64.52%), Postives = 91/124 (73.39%), Query Frame = 0
Query: 16 MPLLSLNLPSNFAAHHIHPSPWSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP 75
MPLLS NLPSNFA H+I PS S PS PPTT+PIVPY+PFI PPP KKT KHT P
Sbjct: 1 MPLLSSNLPSNFATHYIPPSLLS-PPSMPPTTKPIVPYHPFII-PPPFKKTSKHT-WSPS 60
Query: 76 SLPLQELGRPIVPYYPFKFLPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARRSVPP 135
S P +ELGRPIVPYYP+KFLPPP RK + PP YHV PP P KKL++S AR++ P
Sbjct: 61 SRPQKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPA 120
Query: 136 PPPK 139
PPP+
Sbjct: 121 PPPE 121
BLAST of CcUC08G150700 vs. NCBI nr
Match:
KAE8647164.1 (hypothetical protein Csa_018816, partial [Cucumis sativus] >KGN47688.2 hypothetical protein Csa_018930, partial [Cucumis sativus])
HSP 1 Score: 129.0 bits (323), Expect = 3.5e-26
Identity = 82/134 (61.19%), Postives = 94/134 (70.15%), Query Frame = 0
Query: 16 MPLLSLNLPSNFAAHHIHPSPWSLLPSP--PPTTRPIVPYYPFIFPPPPSKKTHKHTSRP 75
M LLSLNLPSN A H I P SLL P PP TRPIVP++PF F P P +KT +HT P
Sbjct: 1 MSLLSLNLPSNSAEHDI---PSSLLSPPLMPPITRPIVPHHPFTF-PSPFRKTFRHTWLP 60
Query: 76 PPSLPL-QELGRPIVPYYPFKFLPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARRS 135
PPS P QEL RPIVPY+P+KF PPPSRK+ PPSYH PPPA L +KLY+S+ RR+
Sbjct: 61 PPSPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLARKLYMSEVRRA 120
Query: 136 VPPPPPKEQPPYPW 146
PPPPP + PY W
Sbjct: 121 TPPPPPIK--PYQW 128
BLAST of CcUC08G150700 vs. NCBI nr
Match:
KAA0058948.1 (extensin-3-like [Cucumis melo var. makuwa] >TYK15370.1 extensin-3-like [Cucumis melo var. makuwa])
HSP 1 Score: 122.9 bits (307), Expect = 2.5e-24
Identity = 66/103 (64.08%), Postives = 75/103 (72.82%), Query Frame = 0
Query: 44 PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQELGRPIVPYYPFKFLPPPSRKRP 103
P TRPIVPY+PFIFPPP K +HT PPP P Q+L RPIVPYYP+KF PPPSRK+
Sbjct: 2 PSITRPIVPYHPFIFPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQA 61
Query: 104 YPP-SYHVIPPPASPLSVKKLYISQARRSVPPPPPKEQPPYPW 146
PP SYH PPP PL KKLY+S+ RR+ PPPPPK+ PY W
Sbjct: 62 NPPLSYHAFPPPTLPLPAKKLYMSEVRRAAPPPPPKK--PYQW 102
BLAST of CcUC08G150700 vs. ExPASy TrEMBL
Match:
A0A1S3CSG8 (extensin-3-like OS=Cucumis melo OX=3656 GN=LOC103504386 PE=4 SV=1)
HSP 1 Score: 156.8 bits (395), Expect = 7.6e-35
Identity = 90/131 (68.70%), Postives = 100/131 (76.34%), Query Frame = 0
Query: 1 MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPWSLLPSPPP---TTRPIVPYYPFI 60
MESHNP+FVFFL II+PLLSLNLPSNFAAH+I P SLL SPPP TRPIVPY+PFI
Sbjct: 1 MESHNPIFVFFLFIILPLLSLNLPSNFAAHYI---PSSLL-SPPPMPSITRPIVPYHPFI 60
Query: 61 FPPPPSKKTHKHTSRPPPSLPLQELGRPIVPYYPFKFLPPPSRKRPYPP-SYHVIPPPAS 120
FPPP K +HT PPP P Q+L RPIVPYYP+KF PPPSRK+ PP SYH PPP
Sbjct: 61 FPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQANPPLSYHAFPPPTL 120
Query: 121 PLSVKKLYISQ 128
PL KKLY+S+
Sbjct: 121 PLPAKKLYMSE 127
BLAST of CcUC08G150700 vs. ExPASy TrEMBL
Match:
A0A0A0KD80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337020 PE=4 SV=1)
HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34
Identity = 101/162 (62.35%), Postives = 115/162 (70.99%), Query Frame = 0
Query: 1 MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPWSLLPSP--PPTTRPIVPYYPFIF 60
MES NP+FVFFL IIM LLSLNLPSN A H I P SLL P PP TRPIVP++PF F
Sbjct: 1 MESRNPIFVFFLFIIMSLLSLNLPSNSAEHDI---PSSLLSPPLMPPITRPIVPHHPFTF 60
Query: 61 PPPPSKKTHKHTSRPPPSLPL-QELGRPIVPYYPFKFLPPPSRKRPY-PPSYHVIPPPAS 120
P P +KT +HT PPPS P QEL RPIVPY+P+KF PPPSRK+ PPSYH PPPA
Sbjct: 61 -PSPFRKTFRHTWLPPPSPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPAL 120
Query: 121 PLSVKKLYISQARRSVPPPPPKEQPPYPW-GWTIPRSPPPPF 158
L +KLY+S+ RR+ PPPPP + PY W I +SPPPPF
Sbjct: 121 LLLARKLYMSEVRRATPPPPPIK--PYQWPKGKIRKSPPPPF 156
BLAST of CcUC08G150700 vs. ExPASy TrEMBL
Match:
A0A5A7UXN4 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001280 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 80/124 (64.52%), Postives = 91/124 (73.39%), Query Frame = 0
Query: 16 MPLLSLNLPSNFAAHHIHPSPWSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP 75
MPLLS NLPSNFA H+I PS S PS PPTT+PIVPY+PFI PPP KKT KHT P
Sbjct: 1 MPLLSSNLPSNFATHYIPPSLLS-PPSMPPTTKPIVPYHPFII-PPPFKKTSKHT-WSPS 60
Query: 76 SLPLQELGRPIVPYYPFKFLPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARRSVPP 135
S P +ELGRPIVPYYP+KFLPPP RK + PP YHV PP P KKL++S AR++ P
Sbjct: 61 SRPQKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPA 120
Query: 136 PPPK 139
PPP+
Sbjct: 121 PPPE 121
BLAST of CcUC08G150700 vs. ExPASy TrEMBL
Match:
A0A5D3CI60 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00140 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 80/124 (64.52%), Postives = 91/124 (73.39%), Query Frame = 0
Query: 16 MPLLSLNLPSNFAAHHIHPSPWSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP 75
MPLLS NLPSNFA H+I PS S PS PPTT+PIVPY+PFI PPP KKT KHT P
Sbjct: 1 MPLLSSNLPSNFATHYIPPSLLS-PPSMPPTTKPIVPYHPFII-PPPFKKTSKHT-WSPS 60
Query: 76 SLPLQELGRPIVPYYPFKFLPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARRSVPP 135
S P +ELGRPIVPYYP+KFLPPP RK + PP YHV PP P KKL++S AR++ P
Sbjct: 61 SRPQKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPA 120
Query: 136 PPPK 139
PPP+
Sbjct: 121 PPPE 121
BLAST of CcUC08G150700 vs. ExPASy TrEMBL
Match:
A0A5D3CVI1 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20002G00010 PE=4 SV=1)
HSP 1 Score: 122.9 bits (307), Expect = 1.2e-24
Identity = 66/103 (64.08%), Postives = 75/103 (72.82%), Query Frame = 0
Query: 44 PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQELGRPIVPYYPFKFLPPPSRKRP 103
P TRPIVPY+PFIFPPP K +HT PPP P Q+L RPIVPYYP+KF PPPSRK+
Sbjct: 2 PSITRPIVPYHPFIFPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQA 61
Query: 104 YPP-SYHVIPPPASPLSVKKLYISQARRSVPPPPPKEQPPYPW 146
PP SYH PPP PL KKLY+S+ RR+ PPPPPK+ PY W
Sbjct: 62 NPPLSYHAFPPPTLPLPAKKLYMSEVRRAAPPPPPKK--PYQW 102
BLAST of CcUC08G150700 vs. TAIR 10
Match:
AT2G43150.1 (Proline-rich extensin-like family protein )
HSP 1 Score: 45.8 bits (107), Expect = 3.6e-05
Identity = 49/131 (37.40%), Postives = 58/131 (44.27%), Query Frame = 0
Query: 34 PSPWSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP---SLPLQELGRPIVPYY 93
P P+ PPP P PYY + PPPP K S PPP S P + P PYY
Sbjct: 53 PPPYEYKSPPPPVKSPPPPYY-YHSPPPPVK------SPPPPYVYSSPPPPVKSPPPPYY 112
Query: 94 PFKFLPPPSRKRPYPPSYHVIPPPASPLSVKKLYISQARRSVPPPPPKEQPPYPWGWTIP 153
PPP K P PP Y+ PPP Y PPPP + PP P+ + P
Sbjct: 113 YHS--PPPPVKSPPPPYYYHSPPPPVKSPPPPYYYHS------PPPPVKSPPPPYYYHSP 168
Query: 154 ----RSPPPPF 158
+SPPPP+
Sbjct: 173 PPPVKSPPPPY 168
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_008466986.1 | 1.6e-34 | 68.70 | PREDICTED: extensin-3-like, partial [Cucumis melo] | [more] |
| KAA0058946.1 | 6.4e-28 | 64.52 | extensin-3-like [Cucumis melo var. makuwa] | [more] |
| TYK10982.1 | 6.4e-28 | 64.52 | extensin-3-like [Cucumis melo var. makuwa] | [more] |
| KAE8647164.1 | 3.5e-26 | 61.19 | hypothetical protein Csa_018816, partial [Cucumis sativus] >KGN47688.2 hypotheti... | [more] |
| KAA0058948.1 | 2.5e-24 | 64.08 | extensin-3-like [Cucumis melo var. makuwa] >TYK15370.1 extensin-3-like [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3CSG8 | 7.6e-35 | 68.70 | extensin-3-like OS=Cucumis melo OX=3656 GN=LOC103504386 PE=4 SV=1 | [more] |
| A0A0A0KD80 | 1.0e-34 | 62.35 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337020 PE=4 SV=1 | [more] |
| A0A5A7UXN4 | 3.1e-28 | 64.52 | Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00128... | [more] |
| A0A5D3CI60 | 3.1e-28 | 64.52 | Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G0014... | [more] |
| A0A5D3CVI1 | 1.2e-24 | 64.08 | Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20002G00... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G43150.1 | 3.6e-05 | 37.40 | Proline-rich extensin-like family protein | [more] |
