CcUC08G150690 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G150690
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Photosystem II CP43 reaction center protein
Location	CicolChr08: 18905611 .. 18907599 (+)
RNA-Seq Expression	CcUC08G150690
Synteny	CcUC08G150690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGGTGAGATGATGTATGAAATATAGTATATATAGACTTGGCAGATATACAATAAACGTTCGTGACTTTATCCTTGCTCATCAATTATAATTGGGTATAAATCCCATTTTAATTCATGAATGGCTCTAAAGGATTTTTTTTTAAAGTTGAATTGGTTATTATAATATGTAATTATTATAATTTATGAGTTATAGTAATAGTTTGTGGATTATTATAATTGTATATGTTTGGGGTGCAAACTATTTTAATGTGTTTGGAGTGCAAATTGAAATATTCCGAGTTATAATAGTGATTTGTGTGCATGATATTTTAGTTTTTGTTTGTGTTAGTTTTGTACTTTTTTTTAATTTTATTTTGTAATTATATTTTTTATACTTTGATTTAAGAAAAAAATTTGATTACATTTTTCATGCTATAACCATACTAAAACTTAAAAGATGTCAAATTTGAAATTATTTCAATTTCTTTGTAATTACATTTTATTATACTTTAATTTAAAAGAAATGGATTTGCTTCGTTTTTTCATAACTATACTAAAAAAAAAAAAAAAAAAAAAAGAAACTTTTTCAATTTTTTTTATTTACATTTTGTATATTGTAATGTAGGAAATCAATTTGATTACAACTCCTTTATTACTATACTGAAACTAAAAAATGGTCAAAAGGTTGATTTTTTTCCTCCTTAATTTTTGAAAAGTTTCGAACTTTGAAATTGTTCTAAATAAATTTATTTGGAGTTTATTAGAAATCATAAGTGAGATGATTATTTATATCAACTTATGTATAATTGATGATTTCGTGAATGATAATGCAAATAAAGTAAAAGATATTTTTGAGTTGAAATGAATGAAAAAATTGATGTGATGCGTGTGCTATCCGAAAAATTTGAAGACTCTCTTGGTCCTAATATTTGAGTTTGGGAATTATCAATATTTTTATTTTTGTATTTAGGCAAGTCAGCAGTACCATTCTAAATTGAATCTTTACACTTTAATAATAAGTAGTGCAATAATGAAACTCCTTAGAACTAAATTTGATAATAATAATAATTATTATTTAACTGATTTCCGTAAAAAATTAACTTCGAGGAATTAAATTTATTATTTATTAAAAATACAGAAACTATAATGAAACAAACTTCAAAATATATGGACTAAAATAGAAAAATTATTTTAAATGACAAAACTACTGAAATATTTACATATAATAGCAAAATATCACAGTCTATTTGCAATAAACAGCGATAGATCATGATAGACGACCATCTATGTTGTGATTGTATATGTCTATCGCGATTTGTCGCAGATAAATAATAAAATTTTACTATATTTATAAATATTTTGGTTCATTTTTTTATATTTAATAATACTAATAATAAACGCTCTAACTATGGAGACCAATGCAATGAGAAGGGAGAAAACAATGTAAATTGTGGAAGCATTATGGACATGATCAGATTCCGCGTTTTGACTTGTATTAATCTAAGTCAAAGTCCACAAGGAAATAACATAGAAGTTTACAAGGCAATGGTTTTTATTCAATATCATGATTACAAAGTCAGTCACACTCTTTAAATTCATACACTAAACAGGATGCTTAAACGTAACTGTGTTATTAACGTTGATTTATGTATCATTTAGTTTATCTTTTCCCTTTTTCCTTCCCTTGTTTTAATAGAAACTACACTGCTTTTTGTCGTCGGAGTTCGACGCAGAAGGCATGGTGGGGTTGGACGTCGATGGTGGGTAGCAGGGTAAAGGAAGGGGAAGGGGAAGGGGAAGGGGAAGCAAATTAAGTACCCAGACGAGAGGAGAGAAAGGAAAAAAAAAAAAAAATTGTTTTTTTATTATTAGGTGGTTTCTTGGTGGGCCGGGAATGCCCGACTTATCAATTTATCCGGTAAACTACTGGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTC

mRNA sequence

ATGGGTAGAAACTACACTGCTTTTTGTCGTCGGAGTTCGACGCAGAAGGCATGGTGGGGTTGGACGTCGATGGTGGGTAGCAGGGTGGTTTCTTGGTGGGCCGGGAATGCCCGACTTATCAATTTATCCGGTAAACTACTGGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTC

Coding sequence (CDS)

ATGGGTAGAAACTACACTGCTTTTTGTCGTCGGAGTTCGACGCAGAAGGCATGGTGGGGTTGGACGTCGATGGTGGGTAGCAGGGTGGTTTCTTGGTGGGCCGGGAATGCCCGACTTATCAATTTATCCGGTAAACTACTGGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTC

Protein sequence

MGRNYTAFCRRSSTQKAWWGWTSMVGSRVVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

Homology

[Close]

BLAST of CcUC08G150690 vs. NCBI nr
Match: CAA30071.1 (unnamed protein product, partial [Synechocystis sp. PCC 6803])

HSP 1 Score: 90.5 bits (223), Expect = 6.4e-15
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 22 TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          TSMVG R +     +WW+GNARLINLSGKLLGAHV HAGLIVFWAGAMNLFEVAHF
Sbjct: 19 TSMVGGRDLPSTGFAWWSGNARLINLSGKLLGAHVRHAGLIVFWAGAMNLFEVAHF 74

[Close]

BLAST of CcUC08G150690 vs. NCBI nr
Match: KOR37856.1 (Photosystem II reaction center protein [Planktothricoides sp. SR001])

HSP 1 Score: 90.1 bits (222), Expect = 8.3e-15
Identity = 45/56 (80.36%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 22 TSMVGSR-----VVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          TSM+G R       +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM LFEVAHF
Sbjct: 7  TSMIGGRDQATTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAHF 62

[Close]

BLAST of CcUC08G150690 vs. NCBI nr
Match: WP_194013892.1 (MULTISPECIES: photosystem II reaction center protein CP43 [Synechocystis] >MBE9202486.1 photosystem II reaction center protein CP43 [Synechocystis salina LEGE 06099] >QUS62085.1 photosystem II reaction center protein CP43 [Synechocystis sp. PCC 7338])

HSP 1 Score: 90.1 bits (222), Expect = 8.3e-15
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 22 TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          TSMVG R +     +WW+GNARLINLSGKLLGAHVAHAGLIVFWAGAM LFEVAHF
Sbjct: 7  TSMVGGRDLPSTGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAHF 62

[Close]

BLAST of CcUC08G150690 vs. NCBI nr
Match: WP_010872428.1 (MULTISPECIES: photosystem II reaction center protein CP43 [unclassified Synechocystis])

HSP 1 Score: 90.1 bits (222), Expect = 8.3e-15
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 22 TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          TSMVG R +     +WW+GNARLINLSGKLLGAHVAHAGLIVFWAGAM LFEVAHF
Sbjct: 19 TSMVGGRDLPSTGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAHF 74

[Close]

BLAST of CcUC08G150690 vs. NCBI nr
Match: 6WJ6_C (Cryo-EM structure of apo-Photosystem II from Synechocystis sp. PCC 6803 [Synechocystis sp. PCC 6803 substr. Kazusa])

HSP 1 Score: 90.1 bits (222), Expect = 8.3e-15
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 22 TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          TSMVG R +     +WW+GNARLINLSGKLLGAHVAHAGLIVFWAGAM LFEVAHF
Sbjct: 7  TSMVGGRDLPSSGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAHF 62

[Close]

BLAST of CcUC08G150690 vs. ExPASy Swiss-Prot
Match: P09193 (Photosystem II CP43 reaction center protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=psbC PE=1 SV=3)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-17
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 22 TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          TSMVG R +     +WW+GNARLINLSGKLLGAHVAHAGLIVFWAGAM LFEVAHF
Sbjct: 7  TSMVGGRDLPSTGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAHF 62

[Close]

BLAST of CcUC08G150690 vs. ExPASy Swiss-Prot
Match: Q8HB52 (Photosystem II CP43 reaction center protein OS=Abies alba OX=45372 GN=psbC PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.2e-17
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 31 SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Sbjct: 34 AWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 75

[Close]

BLAST of CcUC08G150690 vs. ExPASy Swiss-Prot
Match: A9LYI1 (Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=psbC PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.2e-17
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 31 SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Sbjct: 34 AWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 75

[Close]

BLAST of CcUC08G150690 vs. ExPASy Swiss-Prot
Match: Q3V538 (Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE=3 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 3.2e-17
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 31 SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Sbjct: 34 AWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 75

[Close]

BLAST of CcUC08G150690 vs. ExPASy Swiss-Prot
Match: Q85FM3 (Photosystem II CP43 reaction center protein OS=Adiantum capillus-veneris OX=13818 GN=psbC PE=2 SV=3)

HSP 1 Score: 88.6 bits (218), Expect = 3.2e-17
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 31 SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Sbjct: 34 AWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 75

[Close]

BLAST of CcUC08G150690 vs. ExPASy TrEMBL
Match: A0A0M1JX63 (Photosystem II CP43 reaction center protein OS=Planktothricoides sp. SR001 OX=1705388 GN=psbC PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.0e-15
Identity = 45/56 (80.36%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 22 TSMVGSR-----VVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          TSM+G R       +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM LFEVAHF
Sbjct: 7  TSMIGGRDQATTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAHF 62

[Close]

BLAST of CcUC08G150690 vs. ExPASy TrEMBL
Match: A0A291R7T1 (Photosystem II CP43 reaction center protein OS=Azolla caroliniana OX=39631 GN=psbC PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.3e-15
Identity = 48/70 (68.57%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 8  FCRRSSTQKAWWGWTSMVGSR-----VVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAG 67
          F RRS   +  +  T  +G R       +WWAGNARLINLSGKLLGAHVAHAGLIVFWAG
Sbjct: 20 FPRRSYPVETLYNGTLSLGGRDQGTTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAG 79

Query: 68 AMNLFEVAHF 73
          AMNLFEVAHF
Sbjct: 80 AMNLFEVAHF 89

[Close]

BLAST of CcUC08G150690 vs. ExPASy TrEMBL
Match: A0A291R7A1 (Photosystem II CP43 reaction center protein OS=Azolla nilotica OX=336974 GN=psbC PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.3e-15
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 26 GSRVVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          G+   +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Sbjct: 43 GTTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 89

[Close]

BLAST of CcUC08G150690 vs. ExPASy TrEMBL
Match: A0A4D6C2G0 (Photosystem II CP43 reaction center protein OS=Chloroparvula sp. RCC999 OX=2565276 GN=psbC PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.3e-15
Identity = 45/56 (80.36%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 22 TSMVGSRV-----VSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          T +VG R       +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Sbjct: 8  TLLVGGRSQESTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 63

[Close]

BLAST of CcUC08G150690 vs. ExPASy TrEMBL
Match: A0A291R6S1 (Photosystem II CP43 reaction center protein OS=Azolla mexicana OX=336973 GN=psbC PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.3e-15
Identity = 48/70 (68.57%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 8  FCRRSSTQKAWWGWTSMVGSR-----VVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAG 67
          F RRS   +  +  T  +G R       +WWAGNARLINLSGKLLGAHVAHAGLIVFWAG
Sbjct: 20 FPRRSYPVETLYNGTLSLGGRDQGTTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAG 79

Query: 68 AMNLFEVAHF 73
          AMNLFEVAHF
Sbjct: 80 AMNLFEVAHF 89

[Close]

BLAST of CcUC08G150690 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 31 SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 73
          +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Sbjct: 34 AWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF 75

The following BLAST results are available for this feature:

BLAST of CcUC08G150690 vs. NCBI nr


Match Name	E-value	Identity	Description
CAA30071.1	6.4e-15	80.36	unnamed protein product, partial [Synechocystis sp. PCC 6803]	[more]
KOR37856.1	8.3e-15	80.36	Photosystem II reaction center protein [Planktothricoides sp. SR001]	[more]
WP_194013892.1	8.3e-15	80.36	MULTISPECIES: photosystem II reaction center protein CP43 [Synechocystis] >MBE92...	[more]
WP_010872428.1	8.3e-15	80.36	MULTISPECIES: photosystem II reaction center protein CP43 [unclassified Synechoc...	[more]
6WJ6_C	8.3e-15	80.36	Cryo-EM structure of apo-Photosystem II from Synechocystis sp. PCC 6803 [Synecho...	[more]

BLAST of CcUC08G150690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P09193	1.1e-17	80.36	Photosystem II CP43 reaction center protein OS=Synechocystis sp. (strain PCC 680...	[more]
Q8HB52	3.2e-17	97.62	Photosystem II CP43 reaction center protein OS=Abies alba OX=45372 GN=psbC PE=3 ...	[more]
A9LYI1	3.2e-17	97.62	Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=ps...	[more]
Q3V538	3.2e-17	97.62	Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE...	[more]
Q85FM3	3.2e-17	97.62	Photosystem II CP43 reaction center protein OS=Adiantum capillus-veneris OX=1381...	[more]

BLAST of CcUC08G150690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0M1JX63	4.0e-15	80.36	Photosystem II CP43 reaction center protein OS=Planktothricoides sp. SR001 OX=17...	[more]
A0A291R7T1	5.3e-15	68.57	Photosystem II CP43 reaction center protein OS=Azolla caroliniana OX=39631 GN=ps...	[more]
A0A291R7A1	5.3e-15	89.36	Photosystem II CP43 reaction center protein OS=Azolla nilotica OX=336974 GN=psbC...	[more]
A0A4D6C2G0	5.3e-15	80.36	Photosystem II CP43 reaction center protein OS=Chloroparvula sp. RCC999 OX=25652...	[more]
A0A291R6S1	5.3e-15	68.57	Photosystem II CP43 reaction center protein OS=Azolla mexicana OX=336973 GN=psbC...	[more]

BLAST of CcUC08G150690 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	2.3e-18	97.62	photosystem II reaction center protein C	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 31..72 e-value: 5.0E-18 score: 65.1
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 30..72
None	No IPR available	PANTHER	PTHR33180:SF7	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 30..72
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 30..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G150690.1	CcUC08G150690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031676	plasma membrane-derived thylakoid membrane
cellular_component	GO:0030096	plasma membrane-derived thylakoid photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding