CcUC08G150680 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G150680
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RNA-binding protein 2
Location	CicolChr08: 18885911 .. 18891839 (+)
RNA-Seq Expression	CcUC08G150680
Synteny	CcUC08G150680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGTGAGGTCTCGCGTATTGGATCCTAATTTGTGTGAGGAGCTTTGCACTTCAGCTTCGAAACGTTTACTCGGAAACAACAGATAGCTCTAAATTAAATCGGCAGTTAGGGTTTTAGGAATCTCCAAATTCTGCGTGAAGCTCAATTCATTCGTCTCCGCTTTCCAAGATCCCGATTTCCCTCTTTCTTCTGAAGCATTAATTTTGGAAAATTGCAGCATATATGGCGGATGATTATTGGAATCGCCAGCAGCCTCTGCTTCCCTCGCCTGGCATGCTTAAACGACCTCGTACTGATTATGGTAGGCCCCTGTGTTTATTATGTTTAATTTGTCGCCACTTGAAGCCGCTTTTCCGCAATTTGGGTTTCTTTTTTCGAATTCAGTTGCATATAATGATTTTGCAGCTAGTTCGGCAGTGAATTTTGATGGGCTTAATTCCCTAACAATATCTGGAAAACCAATCAAAACATTCTCGTATTGTTTGGTTTGATTTGTTAAGTTAGCTGTGGATAATCAGTCTACACAAAGTAATTGAATTCAGGTTTATTCTGATAAAGTTGTAGTTGAAAATTCTGGATGAAGAAGAATGTGTACCAAATCATCTCTTCCCCAGCTTCTAGGTGGGTGTTATGTAGATCTTCGAAGTGTGTCTTTCATGGGGTATTAAAAAGCTTTGATGGTTCAATGCACTTCATCTGATAGATGATACAAGGAAATTCTCTTGTTTTTGGATCTTCAGAAAGTTCTAATGTCCTCATGAACTGAAACTTGGTGATAATGCCCTTGTTTAGTTTTGAAATTTTACTTCATATTTTGAACCTTATTGAAAATTCTCAGGGGATGAAAATGAACTTTATGAACCATTCATACAACTTTCACGATCTCAAGGAAGAAACCATCGCAATGAATCTTAATTGTGTTGGGGGTAGCTTGTCGTTGCCCTATTTCTGTATGGTATGCCATCATGGGGAAATCCAAACTCTTGAACATTTTGGTCCTTGTTAGTGGAGAAAATTCATTCCTTGCTGCTCAATAAATAGAAGGTTGCTCTATGTTGACATTCTGACAAAGAGAGTCATTATTTACTTGACTTCCTATAATGTGAGAGAAGGCTTTCCTATTATCTCTCCGATTTCAGAGGTGTTTAAGCGCTCAAGTGGGAGAAAAAAGAAAGAAAGAAAAATTGATGCATCTTTTCTTCTTTTGTCCTCTTGCAGCTACTTGTTAGGAAGACCTCTTTAAAGTTTTTAGTATTCAGTGGCTTTGGCCTAGCAAAGCTTCTGAAGCCCTGGATCAATTCATTGGTAATACGCAATTTCAAGTGCAAGCCAAAATTCTTCAGTTATTTATTTTAACTGGCCTGCTTTTATGCTTACTGCCTAATTGAGTCTTTTATTATTGTGTTTAGACTTTTATTGTTTTTGTTATCTTTTGTTACTTTTGTTTTCTTTACTTCTCTGATCTCTTGCTTGTGGAGTTTTTATCTATTGAGCATTAGTCTCTTGTCATTTCATATAAAAAAAAAAGAAAAAAAAAAAAAAGAAAAAAGGTTTTGTCTCTTGTTAAGAAAAATGTTCACCCTGCTAAATGGTCTTGGACTTTTGCTCATGGGAGCTCCCATGAAGGTAGCTAAAGGAATTATCATCAGCAATCAATTATGCTAAGGAAAACATACTAGAAGAAAGTGAGGGGTTGGAGGTTGGGGGAATGGTGTACTGTTATAAATGATAGGAGAGGTCTATCCAAATACGGTGCTCATACAAAAATCTAAATTGAGGGTGGATACAAATGTAATAAAAACACTCTGGAGCTTGGGGGTGATTTGATGGACTGAAAAGTTGAGGGGCAGATTGCTTTATAGTCTGAAAGGAAGTAACAAATATGGAGAGGAAGAAACTCTGGAATAAAGTGGGAAATGTATTTGGCTGCTATGATGGAAAGTGGTATCTTGCGAGAGACTTTAATGTAGTGAGAATAGTAACGAAATCTTCAGCCAGAGCAGCAATTGAAAGCATGATGGATTTAGATAAGTTAGTTGAAGATCAGAATGATCAAAATGGAATAATGTGCCTGGTTGAGTTTTAGAGATGTTCTTTTGCAGTCCCTAGTGGATTGGTTTTGGGTGTCCTAGGAATGCTTAACAAAGTTTCATCTGAAAGATCTGTGTTATATTAAAAGGAAGGAATGGTTAACAAAATTTCAAGAGTTGAAGACAATAAAGAAGGTGAGATCAAGTTTTTGACCCGTTTTAAATGTGTAGGGAACAGGGGAGCTTGATGGGACCATGCCCTTTTAGATGGGAGAACCCATGGGTGAAACATCAAGAATTTTGGAGGAGATAGGGAGAACCCATGGGTGAAACATCAAGAATTTTGGAGGAGATAGGGAGTTAACAATTATGTGGACAGTGGGAAAATGATATTAGTAGCTGCGCACTTTGAAAGGAATTATAGACCAATGGGAATTGGATACATTTGAAAATTTTGGTACCGGAGGGAGTTGAAAATCTAATGAGCAACATATATTAAAAAAGGAGAATGGGTGCTTGGGGCGGAAAGCTAGGGAGACAAAATCAATGCAATGGCAACTGTGTGGCATCATCTGCAAAAAGGTTTTGAGTTGCTTCCAAAAATTTAAATGGTTAAAAGAAGACGATGTTAGACTTTTGGTATATATATTTATACAATAATAATGTTTGTAGCGAAAGATTTGTTTTGTTTTTTTGAATTACGCTTGGTTGTTCTTACAAGAAACTTTAGGTTCATATATTGGGTATAATTAGTATTTTCATAGTATGTATTCATATTGTGATCCCCTACCTTAATAATGTTTAGATACTTCCATAAAGGTTTGTGGGCATGATTCACATTTGTTAACATATTATTGTTGACATCCTAAGTAATCTTGAAACCTTTCTGAAGAATTTTTCACTTGGTTTCATAAACTAGAAGCTTGAGGTTTTTTTGGGATTGTAACCAAATTTTCACTTGATTTACAAATGGTTCTGTTTAAGACTTTGATTTTCTATTTAATTTTGCTTTTACAGTGGTTTTCCGTCCATTGAACTTAAAGTACTATTATATATTTGGATTGGGAGGATGAAGAGATTAGATATGTGGAATATGAAAGTATGACTGAACTGCTGAAAAAGTTAATTTAGATAGTATGATAGGACTTTCTATACTAATTGAACTTTGTTGATTTAATTGAGTATTACTGAAATAGTTTGTGGCTTTTCCTTTTTACATATCTTTTATTCCTTTGCTAATGGGGCATCTGTTCGTTCATGTGTGCAATAAACTCATTTTTTCCTTCTTCCCTTATTTATCTTCTTTTGGTCTTGTTACCTGTTTTCCTTATGGTAAATTGTAAATGGATCAAGCCCTGCTTTCACTCTCTGCAGAACTTCCATCCTCTGGATTGCCTACTGGCCATGAGATGCACAATTACTTAGCAAGTGATGATCGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGATCAGCATATGATCGTTATCTCCAAAGTGTGGTATGACTGGAATCTAGATTTATTTTCTTTTCTTGCCTCACAGTTTGAGTGCTGAAAACTTTTTGTAATTGCTTCTGAAGCAACTTTCTTCTTTTCCTTCCGGAGAAGTACCTACCCACGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAGTAGAATGCCTGGGCCTTTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCAAATGGTCGAAATATTGAGTATGGTAATCATCTGCCTGTAGATCCGATTAGCAGACCTGGACGTGAAACTGTGCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTCCAGATAGTTCCCGGAGGGAAGTAGCTCGTATCCTTTTTATAGGGGGTGATGCTAGAAGCAAAATTATATTGACTTTTTTTTCCTTTTTTTTCCCTCTTTTCAATTATTTACTTAAAAAACTACATTCCTTTATTCATATAAACAAAACTACATTCCTTCACTCCATTGTAGATATTTTCCGCCCCTTTGTGGGATATAAAGAATTGAGACTTGTGAGCAAAGAATCTAAACATGTTAGTCTATTACTAGTAACTGTTTTGTTGTTTTTGAATTTTCTTTGTATACTTTTAAACTCATGCTAACCTTTACAATGTTTTTTGTGTCAATTTTGTTTCAAATTTTAGCGTGGTGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTGAATTGTATTCACATTTTTTCCATATTGGCTTTTGCAGTTCCTATAGAAGCAATATTTTTCCCTAGTAGCTACTTGTTTACTTCAGTAGAAATGGTTGGAATTGAATTTCTCATACAAAATCTTATCATGTTTGTATTTTTATTGAACTTGTGTATACATGCATGCACATCATTTATCTCTGGTTATGGGGTGGCTATTAGAGTACTTTTATGTGGAGTTCTGGACAAGTCAGGAGTTTCAGTTGGAGTTGGAAAACTTATTTAGTTTATGGCCACTACATAGATTCTAAGGTGTTGATTTTAGGGTTTCCAGATGAGTATTTTTCTTGTTTGTTCTCTTTTGGGGGTAGGGGGCTATACGAGCTTACTGTTACTTTTGATAGACAGCCTAACTTGAGAGAGAAGGTTGTTGGCCTATTTTTGTTACGATCTGTGCATTGGGAGCTTATTTTCAGTGCTAGAGATTATTGAAGTTGTTTGATGTATCTTTAGCCAGAGAAGATTTAAAATTTGTCTGGACTCCTTTTTCGGGGAGGATTAAATACTCTCAAGACAAGATTTTTGCACCCTTCCAGTCGAGGAATCAATGTATATTGGATCGTTTCTGTTTAGGGCAATGGAGCCTTTGGAGATTTCTTCTGCGCTTGCATTATGTGGAATGCTCAAATGTAACCTTGGAGAGATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAAGATAATCTGATTTTATTGCTTGAAGGCTTTGAGATTTCTTCATCGCGCTTTTATCAGACTGACTTTTCCTTGACAAACCAAAGAAAACCTCTTTTTCTTCCTTTCATGGCCATTAATTTACAAAGAGAGCTAAATGCTGTGGCTTAATTCAGTTAGAGCAGTGCTCGAGATGTGTGGTTAGCCTTTGTTATAAACAGAAGAAATTTTCAAGATTACAAGACATGCAGTTCTCTACGAAGTATAGTGGGTTTTTTGATCCAGCTTTTGTGAGCTAGTCTTGTAATCTCATCTTATTAATGAAATTTGTTTCCTATTAAAGGAAACATCTAGGTGCATGTTTAATTAATTTTCTGTTATAAACGGAAGTGGTTTTTCAAAAAGAAAAAAAAAAAAAAAAAAGATGGAAGTAGTTTCATCATTTATGTGGCAACTTGTTTATGTTTAGTTTTTGATGAAAGAATACACGATAGATTTGCTAATAAGTATCTGATTTGCACAGGTTATAAAATGGACGAACAAGATCCCGAATCTAATTATTTGCGACTACAATTCTCACGACATCCAGGTCCGAGGTCTGGATCTGGAACTGGCGGCAAAAGGTGAATAAGCTATAGAGACTGGATGACCAATTTAAATGGGAGACGTATCATCTTCTAGTGCACATTTTACTAGCTGCTTGTGCATCCATTATATGTTATTAGACATGCTGTTGTTAAGATAGGCAAATTGTAGCCGACCCCACGGAATATTAAAGTTGCTTGTAAATTTAAGGGGATTAGATTCAGAGTGTTTCAATAGTTAACTGTGCAATTGAATTTTGATGTACAATTATGTCAATGCTTCAGAATTCGAAGATATACCTGGTACAATTTTTATAA

mRNA sequence

ACGGTGAGGTCTCGCGTATTGGATCCTAATTTGTGTGAGGAGCTTTGCACTTCAGCTTCGAAACCATATATGGCGGATGATTATTGGAATCGCCAGCAGCCTCTGCTTCCCTCGCCTGGCATGCTTAAACGACCTCGTACTGATTATGAACTTCCATCCTCTGGATTGCCTACTGGCCATGAGATGCACAATTACTTAGCAAGTGATGATCGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGATCAGCATATGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTTTTCCTTCCGGAGAAGTACCTACCCACGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAGTAGAATGCCTGGGCCTTTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCAAATGGTCGAAATATTGAGTATGGTAATCATCTGCCTGTAGATCCGATTAGCAGACCTGGACGTGAAACTGTGCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTCCAGATAGTTCCCGGAGGGAAGTAGCTCATATTTTCCGCCCCTTTGTGGGATATAAAGAATTGAGACTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTTATAAAATGGACGAACAAGATCCCGAATCTAATTATTTGCGACTACAATTCTCACGACATCCAGGTCCGAGGTCTGGATCTGGAACTGGCGGCAAAAGGTGAATAAGCTATAGAGACTGGATGACCAATTTAAATGGGAGACGTATCATCTTCTAGTGCACATTTTACTAGCTGCTTGTGCATCCATTATATGTTATTAGACATGCTGTTGTTAAGATAGGCAAATTGTAGCCGACCCCACGGAATATTAAAGTTGCTTGTAAATTTAAGGGGATTAGATTCAGAGTGTTTCAATAGTTAACTGTGCAATTGAATTTTGATGTACAATTATGTCAATGCTTCAGAATTCGAAGATATACCTGGTACAATTTTTATAA

Coding sequence (CDS)

ACGGTGAGGTCTCGCGTATTGGATCCTAATTTGTGTGAGGAGCTTTGCACTTCAGCTTCGAAACCATATATGGCGGATGATTATTGGAATCGCCAGCAGCCTCTGCTTCCCTCGCCTGGCATGCTTAAACGACCTCGTACTGATTATGAACTTCCATCCTCTGGATTGCCTACTGGCCATGAGATGCACAATTACTTAGCAAGTGATGATCGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGATCAGCATATGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTTTTCCTTCCGGAGAAGTACCTACCCACGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAGTAGAATGCCTGGGCCTTTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCAAATGGTCGAAATATTGAGTATGGTAATCATCTGCCTGTAGATCCGATTAGCAGACCTGGACGTGAAACTGTGCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTCCAGATAGTTCCCGGAGGGAAGTAGCTCATATTTTCCGCCCCTTTGTGGGATATAAAGAATTGAGACTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTTATAAAATGGACGAACAAGATCCCGAATCTAATTATTTGCGACTACAATTCTCACGACATCCAGGTCCGAGGTCTGGATCTGGAACTGGCGGCAAAAGGTGA

Protein sequence

TVRSRVLDPNLCEELCTSASKPYMADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAVSPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGTGGKR

Homology

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BLAST of CcUC08G150680 vs. NCBI nr
Match: XP_038884976.1 (RNA-binding protein 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 516.2 bits (1328), Expect = 1.8e-142
Identity = 248/257 (96.50%), Postives = 254/257 (98.83%), Query Frame = 0


Query: 24  MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 83
           MADDYWNRQQPLLPSPG+LKRPRT+YELPSSGLP+GHEMHNYLASDDRGG RSVKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPGILKRPRTEYELPSSGLPSGHEMHNYLASDDRGGLRSVKDTQTI 60

Query: 84  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 143
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 120

Query: 144 SPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 203
           SPD+APNGRNIEYGNHLPVD +SRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP
Sbjct: 121 SPDIAPNGRNIEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180

Query: 204 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 263
           FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 264 FSRHPGPRSGSGTGGKR 281
           FSRHPGPRSGSG+GGKR
Sbjct: 241 FSRHPGPRSGSGSGGKR 257

[Close]

BLAST of CcUC08G150680 vs. NCBI nr
Match: XP_031743537.1 (RNA-binding protein 2 isoform X3 [Cucumis sativus])

HSP 1 Score: 514.2 bits (1323), Expect = 6.9e-142
Identity = 246/257 (95.72%), Postives = 252/257 (98.05%), Query Frame = 0


Query: 24  MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 83
           MADDYWNRQQPLLPSP MLKRPRTDYELP+SGL TGH+MHNYL SDDRGGPRSVKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPAMLKRPRTDYELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTI 60

Query: 84  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 143
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRPVANRMPVG+RMPGPLLPDPIVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAV 120

Query: 144 SPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 203
           SPDLAPNGRN+EYGNHLPVD +SRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP
Sbjct: 121 SPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180

Query: 204 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 263
           FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 264 FSRHPGPRSGSGTGGKR 281
           FSRHPGPRSGSG+GGKR
Sbjct: 241 FSRHPGPRSGSGSGGKR 257

[Close]

BLAST of CcUC08G150680 vs. NCBI nr
Match: KAE8647163.1 (hypothetical protein Csa_018814 [Cucumis sativus])

HSP 1 Score: 514.2 bits (1323), Expect = 6.9e-142
Identity = 246/257 (95.72%), Postives = 252/257 (98.05%), Query Frame = 0


Query: 24  MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 83
           MADDYWNRQQPLLPSP MLKRPRTDYELP+SGL TGH+MHNYL SDDRGGPRSVKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPAMLKRPRTDYELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTI 60

Query: 84  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 143
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRPVANRMPVG+RMPGPLLPDPIVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAV 120

Query: 144 SPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 203
           SPDLAPNGRN+EYGNHLPVD +SRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP
Sbjct: 121 SPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180

Query: 204 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 263
           FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 264 FSRHPGPRSGSGTGGKR 281
           FSRHPGPRSGSG+GGKR
Sbjct: 241 FSRHPGPRSGSGSGGKR 257

[Close]

BLAST of CcUC08G150680 vs. NCBI nr
Match: XP_031743540.1 (RNA-binding protein 2 isoform X6 [Cucumis sativus])

HSP 1 Score: 514.2 bits (1323), Expect = 6.9e-142
Identity = 246/257 (95.72%), Postives = 252/257 (98.05%), Query Frame = 0


Query: 24  MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 83
           MADDYWNRQQPLLPSP MLKRPRTDYELP+SGL TGH+MHNYL SDDRGGPRSVKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPAMLKRPRTDYELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTI 60

Query: 84  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 143
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRPVANRMPVG+RMPGPLLPDPIVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAV 120

Query: 144 SPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 203
           SPDLAPNGRN+EYGNHLPVD +SRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP
Sbjct: 121 SPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180

Query: 204 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 263
           FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 264 FSRHPGPRSGSGTGGKR 281
           FSRHPGPRSGSG+GGKR
Sbjct: 241 FSRHPGPRSGSGSGGKR 257

[Close]

BLAST of CcUC08G150680 vs. NCBI nr
Match: XP_031743542.1 (RNA-binding protein 2 isoform X8 [Cucumis sativus])

HSP 1 Score: 514.2 bits (1323), Expect = 6.9e-142
Identity = 246/257 (95.72%), Postives = 252/257 (98.05%), Query Frame = 0


Query: 24  MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 83
           MADDYWNRQQPLLPSP MLKRPRTDYELP+SGL TGH+MHNYL SDDRGGPRSVKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPAMLKRPRTDYELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTI 60

Query: 84  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 143
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRPVANRMPVG+RMPGPLLPDPIVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAV 120

Query: 144 SPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 203
           SPDLAPNGRN+EYGNHLPVD +SRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP
Sbjct: 121 SPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180

Query: 204 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 263
           FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 264 FSRHPGPRSGSGTGGKR 281
           FSRHPGPRSGSG+GGKR
Sbjct: 241 FSRHPGPRSGSGSGGKR 257

[Close]

BLAST of CcUC08G150680 vs. ExPASy Swiss-Prot
Match: Q8H0P8 (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 8.1e-85
Identity = 163/253 (64.43%), Postives = 190/253 (75.10%), Query Frame = 0


Query: 24  MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 83
           MAD YWNRQQ LLP  G+ KRPR DYE+P+SGLP+G+EMH     +DR G   VKD++TI
Sbjct: 1   MADGYWNRQQSLLPHSGLHKRPRPDYEMPASGLPSGNEMHYLSREEDRSGHPMVKDSKTI 60

Query: 84  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVM-SRPPA 143
           GSAYDRYLQ  Q+ SF SGE  T G +G+ R +         +P   L DP  M  R   
Sbjct: 61  GSAYDRYLQG-QVPSFTSGEASTVGALGLQRGIGG-------LPNHSLSDPSAMIGRHGG 120

Query: 144 VSPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFR 203
             PDLAPNGR + YG   P+DP+SR G E   LPPDAS TLY+EGLP D +RREVAHIFR
Sbjct: 121 GGPDLAPNGRGMNYGFQPPMDPVSRHGPEPALLPPDASPTLYIEGLPSDCTRREVAHIFR 180

Query: 204 PFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRL 263
           PFVGY+E+RLVSKE+KHR GDPLILCFVDFANPACAATA+SALQGYK+DE +PES++LRL
Sbjct: 181 PFVGYREVRLVSKEAKHR-GDPLILCFVDFANPACAATALSALQGYKVDEINPESSHLRL 240

Query: 264 QFSRHPGPRSGSG 276
           QFSR+PGPRSG G
Sbjct: 241 QFSRYPGPRSGGG 244

[Close]

BLAST of CcUC08G150680 vs. ExPASy Swiss-Prot
Match: G7ID19 (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 4.0e-84
Identity = 162/261 (62.07%), Postives = 197/261 (75.48%), Query Frame = 0


Query: 24  MADDYWNRQQPLLPSP-GMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQT 83
           MAD +WNRQQ  LP P GMLKRPRT+Y+   SG+ +G+E+HNY+A ++  G + + DT+ 
Sbjct: 1   MADGFWNRQQQHLPPPGGMLKRPRTEYDTAPSGVTSGNEVHNYIAQNN--GHQMLNDTKI 60

Query: 84  IGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPA 143
           +GSAYDR+LQS  L+SF SGE    G +G  R V         +PG  L DP  M     
Sbjct: 61  LGSAYDRFLQSAGLTSFNSGEASVIGGVGFARGV-------GELPGHSLGDPSAMGHLSG 120

Query: 144 V--SPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHI 203
           V   PDL+ NGR++ +G  LP+D +SRPG ET+PLP DAS+TLYVEGLP DS++REVAHI
Sbjct: 121 VGGGPDLSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHI 180

Query: 204 FRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYL 263
           FRPFVGY+E+RLV+KESKHRGGDPLILCFVDFANPACAATA+SALQGYK+DE +PES+YL
Sbjct: 181 FRPFVGYREVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDEINPESSYL 240

Query: 264 RLQFSRHPGPRSGS-GTGGKR 281
           RLQFSR PG RSG  G  GKR
Sbjct: 241 RLQFSRSPGRRSGGPGPRGKR 252

[Close]

BLAST of CcUC08G150680 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 7.9e-64
Identity = 136/262 (51.91%), Postives = 175/262 (66.79%), Query Frame = 0


Query: 20  SKPYMADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASD-DRGGPRSVK 79
           S P ++ D+++   P  P  G      T Y +PS       +MH+YL+ D DRG P SVK
Sbjct: 182 SLPSVSPDFFSTIGPTDPQEG------TPYLIPSG------DMHSYLSQDEDRGIPHSVK 241

Query: 80  DTQTIGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMS 139
           DT++IGSAYDRYLQS+Q    PS E      +GM R   + M     MPGP + + ++  
Sbjct: 242 DTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSNM-----MPGPSMGE-LMAG 301

Query: 140 RPPAVSPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVA 199
              ++  D  PNGR++ +G    +D + RPGRE  PLPPD SNTLYVEGLP + SRREV+
Sbjct: 302 CGGSLPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVS 361

Query: 200 HIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 259
           HIFRPFVGY+E+RLV+++SKHR GDP +LCFVDF N ACAATA+SALQ Y+MDE +P+S 
Sbjct: 362 HIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSK 421

Query: 260 YLRLQFSRHPGPRSGSGTGGKR 281
            LRLQF R+PGPR G   GG+R
Sbjct: 422 ILRLQFFRNPGPRPGQ-RGGRR 421

[Close]

BLAST of CcUC08G150680 vs. ExPASy Swiss-Prot
Match: A1A6K6 (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.2e-59
Identity = 134/251 (53.39%), Postives = 161/251 (64.14%), Query Frame = 0


Query: 24  MADDYWNRQ-QPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQT 83
           MAD YWN+Q Q   P  G +KRPR+D+E PSS +  GH    Y   +D      V DT+T
Sbjct: 1   MADGYWNQQRQQHHPPGGPMKRPRSDFEAPSSTMTIGHGGGYYPRDED----LDVPDTRT 60

Query: 84  IGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPA 143
           IGSAYDRYLQSVQ     SGE    G + MGR        G  +      D  ++ R   
Sbjct: 61  IGSAYDRYLQSVQ-----SGE---GGSVSMGRSGGGGGGGGGNVQ---TIDDFMLRRGGV 120

Query: 144 VSPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFR 203
           +  D  PNG  I +    P +P+ R       LP DASNTLYVEGLP + SRREVAHIFR
Sbjct: 121 LPLDHGPNGHTIGFD---PPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFR 180

Query: 204 PFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRL 263
           PFVGY+E+RLV+K+SKHR GDP++LCFVDF NPACAATA+SALQGY+MDE + +S +LRL
Sbjct: 181 PFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRL 228

Query: 264 QFSRHPGPRSG 274
           QFSR PG R G
Sbjct: 241 QFSRKPGSRPG 228

[Close]

BLAST of CcUC08G150680 vs. ExPASy Swiss-Prot
Match: Q6JB11 (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.0e-28
Identity = 56/84 (66.67%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 169 GRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILC 228
           GR   PLPPDAS+TLY+EGLP + +RREV+HIFRPFVG++E+RLV+KES+H GGDP +LC
Sbjct: 26  GRPEPPLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 85

Query: 229 FVDFANPACAATAMSALQGYKMDE 253
           FVDF NPA A  A+ ALQG+  D+
Sbjct: 86  FVDFDNPAQATIALEALQGHVTDD 109

[Close]

BLAST of CcUC08G150680 vs. ExPASy TrEMBL
Match: A0A1S3B4F0 (RNA-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103485638 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.7e-141
Identity = 246/257 (95.72%), Postives = 251/257 (97.67%), Query Frame = 0


Query: 24  MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 83
           MADDYWNRQQPLLPSP MLKRPRTDYELP+SGL TGH+MHNYLASDDRGGPRSVKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPAMLKRPRTDYELPASGLSTGHDMHNYLASDDRGGPRSVKDTQTI 60

Query: 84  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 143
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRPVANRMPVG+RMPGPLLPDPIVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAV 120

Query: 144 SPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 203
           SPDLAPNGRNIEYGNHLPVD +SRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP
Sbjct: 121 SPDLAPNGRNIEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180

Query: 204 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 263
           FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 264 FSRHPGPRSGSGTGGKR 281
           FSRHPGPRSG G+ GKR
Sbjct: 241 FSRHPGPRSGFGSSGKR 257

[Close]

BLAST of CcUC08G150680 vs. ExPASy TrEMBL
Match: A0A6J1CKA2 (RNA-binding protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011769 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.4e-140
Identity = 242/257 (94.16%), Postives = 250/257 (97.28%), Query Frame = 0


Query: 24  MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 83
           MADDYWNRQQPLLPSPGMLKRPR DYELPSSGLPTGHEMHNYL SDDRGGPR+VKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPGMLKRPRNDYELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTI 60

Query: 84  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 143
           GSAYDRYLQSVQLSSF SGEVPTHG+MGM RPVANRMPVGSRMPGP +PDP+VMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFNSGEVPTHGDMGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAV 120

Query: 144 SPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 203
           SPDLAPNGRNIEYGNHLP+D ++RPGRETVPLPPDASNTLYVEGLP DSSRREVAHIFRP
Sbjct: 121 SPDLAPNGRNIEYGNHLPMDSMTRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP 180

Query: 204 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 263
           FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 264 FSRHPGPRSGSGTGGKR 281
           FSRHPGPRSGSG+GGKR
Sbjct: 241 FSRHPGPRSGSGSGGKR 257

[Close]

BLAST of CcUC08G150680 vs. ExPASy TrEMBL
Match: A0A6J1JXN9 (RNA-binding protein 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489771 PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.5e-134
Identity = 234/257 (91.05%), Postives = 246/257 (95.72%), Query Frame = 0


Query: 24  MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 83
           MADDYWNRQQPLLPSPGMLKRPRT+YE PSSGLP  HEMHNY+A+DD GGPR+VKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPGMLKRPRTEYEPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTI 60

Query: 84  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 143
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRP+ANRMP+G+RMPGPLLPDP+VMSRP AV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLANRMPIGNRMPGPLLPDPVVMSRPLAV 120

Query: 144 SPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 203
           SPDLA NGRNIEYGNHLPVD  +RP RETVPLPPDA+NTLYVEGLP DSSRREVAHIFRP
Sbjct: 121 SPDLALNGRNIEYGNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRP 180

Query: 204 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 263
           FVGYKELRLV+KESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 264 FSRHPGPRSGSGTGGKR 281
           FSRHPGPRSGSG+GGKR
Sbjct: 241 FSRHPGPRSGSGSGGKR 257

[Close]

BLAST of CcUC08G150680 vs. ExPASy TrEMBL
Match: A0A6J1FDW9 (RNA-binding protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444852 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 2.4e-132
Identity = 231/257 (89.88%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 24  MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 83
           MADDYWNRQQPLLPSPGMLKRPRT+YE PSSGLP  HEMHNY+A+DD GGPR+VKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPGMLKRPRTEYEPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTI 60

Query: 84  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 143
           GSAYDRYLQSVQ SSF SGEVPTHGEMGMGRP+ANRMP+ +RMPGPLLPDP+VMSRP AV
Sbjct: 61  GSAYDRYLQSVQPSSFTSGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAV 120

Query: 144 SPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 203
           SPDLA NGRNIEY NHLPVD  +RP RETVPLPPDA+NTLYVEGLP DSSRREVAHIFRP
Sbjct: 121 SPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRP 180

Query: 204 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 263
           FVGYKELRLV+KESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 264 FSRHPGPRSGSGTGGKR 281
           FSRHPGPRSGSG+GGKR
Sbjct: 241 FSRHPGPRSGSGSGGKR 257

[Close]

BLAST of CcUC08G150680 vs. ExPASy TrEMBL
Match: A0A6J1E3U2 (RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430572 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.9e-131
Identity = 229/258 (88.76%), Postives = 243/258 (94.19%), Query Frame = 0


Query: 24  MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 83
           MADDYWNRQQPLLPSPGMLKRPR +YELPSSG P GH+MHN+LASDDR GP +VKDTQ I
Sbjct: 1   MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQAI 60

Query: 84  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 143
           GSAYDRYLQSVQLSS  SGEVPT GEMGMGRP+ANR+PVGSRMPGP +PDP+VMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPSIPDPVVMSRPPAV 120

Query: 144 SPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 203
           SPDL PNGRNIEYGNHLPV+ ++RPGRETVPLPPDASNTLYVEGLP DSSRREVAHIFRP
Sbjct: 121 SPDLTPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP 180

Query: 204 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 263
           FVGYKELRLVSKESKHRGGDPLILCFVDFAN ACAATAMSALQGYKMDEQDP+SNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQ 240

Query: 264 FSRHPGPRSGS-GTGGKR 281
           FSRHPGPRSG+ G+GGKR
Sbjct: 241 FSRHPGPRSGTGGSGGKR 258

[Close]

BLAST of CcUC08G150680 vs. TAIR 10
Match: AT1G21320.2 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-70
Identity = 143/264 (54.17%), Postives = 187/264 (70.83%), Query Frame = 0


Query: 24  MADDYWNRQQ----PLLPSPGML--KRPRTDYELPSSGLPTGHEMHNYLASD-DRGGPRS 83
           MAD+YWN+Q+    P+  +P +L  KRPR+D++     +P+G +MH+YL+ D DRG P S
Sbjct: 1   MADEYWNQQRQYQLPISSNPHVLPPKRPRSDFQGTPYLIPSG-DMHSYLSQDEDRGIPHS 60

Query: 84  VKDTQTIGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIV 143
           VKDT++IGSAYDRYLQS+Q    PS E      +GM R   + M     MPGP + + ++
Sbjct: 61  VKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSNM-----MPGPSMGE-LM 120

Query: 144 MSRPPAVSPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRRE 203
                ++  D  PNGR++ +G    +D + RPGRE  PLPPD SNTLYVEGLP + SRRE
Sbjct: 121 AGCGGSLPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRRE 180

Query: 204 VAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPE 263
           V+HIFRPFVGY+E+RLV+++SKHR GDP +LCFVDF N ACAATA+SALQ Y+MDE +P+
Sbjct: 181 VSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPD 240

Query: 264 SNYLRLQFSRHPGPRSGSGTGGKR 281
           S  LRLQF R+PGPR G   GG+R
Sbjct: 241 SKILRLQFFRNPGPRPGQ-RGGRR 253

[Close]

BLAST of CcUC08G150680 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 245.4 bits (625), Expect = 5.6e-65
Identity = 136/262 (51.91%), Postives = 175/262 (66.79%), Query Frame = 0


Query: 20  SKPYMADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASD-DRGGPRSVK 79
           S P ++ D+++   P  P  G      T Y +PS       +MH+YL+ D DRG P SVK
Sbjct: 182 SLPSVSPDFFSTIGPTDPQEG------TPYLIPSG------DMHSYLSQDEDRGIPHSVK 241

Query: 80  DTQTIGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMS 139
           DT++IGSAYDRYLQS+Q    PS E      +GM R   + M     MPGP + + ++  
Sbjct: 242 DTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSNM-----MPGPSMGE-LMAG 301

Query: 140 RPPAVSPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVA 199
              ++  D  PNGR++ +G    +D + RPGRE  PLPPD SNTLYVEGLP + SRREV+
Sbjct: 302 CGGSLPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVS 361

Query: 200 HIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 259
           HIFRPFVGY+E+RLV+++SKHR GDP +LCFVDF N ACAATA+SALQ Y+MDE +P+S 
Sbjct: 362 HIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSK 421

Query: 260 YLRLQFSRHPGPRSGSGTGGKR 281
            LRLQF R+PGPR G   GG+R
Sbjct: 422 ILRLQFFRNPGPRPGQ-RGGRR 421

[Close]

BLAST of CcUC08G150680 vs. TAIR 10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 231.5 bits (589), Expect = 8.4e-61
Identity = 134/251 (53.39%), Postives = 161/251 (64.14%), Query Frame = 0


Query: 24  MADDYWNRQ-QPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQT 83
           MAD YWN+Q Q   P  G +KRPR+D+E PSS +  GH    Y   +D      V DT+T
Sbjct: 1   MADGYWNQQRQQHHPPGGPMKRPRSDFEAPSSTMTIGHGGGYYPRDED----LDVPDTRT 60

Query: 84  IGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPA 143
           IGSAYDRYLQSVQ     SGE    G + MGR        G  +      D  ++ R   
Sbjct: 61  IGSAYDRYLQSVQ-----SGE---GGSVSMGRSGGGGGGGGGNVQ---TIDDFMLRRGGV 120

Query: 144 VSPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFR 203
           +  D  PNG  I +    P +P+ R       LP DASNTLYVEGLP + SRREVAHIFR
Sbjct: 121 LPLDHGPNGHTIGFD---PPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFR 180

Query: 204 PFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRL 263
           PFVGY+E+RLV+K+SKHR GDP++LCFVDF NPACAATA+SALQGY+MDE + +S +LRL
Sbjct: 181 PFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRL 228

Query: 264 QFSRHPGPRSG 274
           QFSR PG R G
Sbjct: 241 QFSRKPGSRPG 228

[Close]

BLAST of CcUC08G150680 vs. TAIR 10
Match: AT1G76940.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-43
Identity = 86/141 (60.99%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 133 DPIVMSRPPAVSPDLAPNGRNIEYGNHLPVDPISRPGRETVPLPPDASNTLYVEGLPPDS 192
           D  ++ R   +  D  PNG  I +    P +P+ R       LP DASNTLYVEGLP + 
Sbjct: 42  DDFMLRRGGVLPLDHGPNGHTIGFD---PPEPVGRRN-----LPSDASNTLYVEGLPSNC 101

Query: 193 SRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDE 252
           SRREVAHIFRPFVGY+E+RLV+K+SKHR GDP++LCFVDF NPACAATA+SALQGY+MDE
Sbjct: 102 SRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDE 161

Query: 253 QDPESNYLRLQFSRHPGPRSG 274
            + +S +LRLQFSR PG R G
Sbjct: 162 NESDSKFLRLQFSRKPGSRPG 174

The following BLAST results are available for this feature:

BLAST of CcUC08G150680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884976.1	1.8e-142	96.50	RNA-binding protein 2-like isoform X2 [Benincasa hispida]	[more]
XP_031743537.1	6.9e-142	95.72	RNA-binding protein 2 isoform X3 [Cucumis sativus]	[more]
KAE8647163.1	6.9e-142	95.72	hypothetical protein Csa_018814 [Cucumis sativus]	[more]
XP_031743540.1	6.9e-142	95.72	RNA-binding protein 2 isoform X6 [Cucumis sativus]	[more]
XP_031743542.1	6.9e-142	95.72	RNA-binding protein 2 isoform X8 [Cucumis sativus]	[more]

BLAST of CcUC08G150680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H0P8	8.1e-85	64.43	RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1	[more]
G7ID19	4.0e-84	62.07	RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1	[more]
F4HWF9	7.9e-64	51.91	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
A1A6K6	1.2e-59	53.39	Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE...	[more]
Q6JB11	7.0e-28	66.67	Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1	[more]

BLAST of CcUC08G150680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B4F0	1.7e-141	95.72	RNA-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103485638 PE=4 SV=1	[more]
A0A6J1CKA2	2.4e-140	94.16	RNA-binding protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011769 PE=4 S...	[more]
A0A6J1JXN9	1.5e-134	91.05	RNA-binding protein 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11148977...	[more]
A0A6J1FDW9	2.4e-132	89.88	RNA-binding protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444...	[more]
A0A6J1E3U2	5.9e-131	88.76	RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430572 PE=4 SV...	[more]

BLAST of CcUC08G150680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21320.2	1.2e-70	54.17	nucleotide binding;nucleic acid binding	[more]
AT1G21320.1	5.6e-65	51.91	nucleotide binding;nucleic acid binding	[more]
AT1G76940.1	8.4e-61	53.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76940.2	2.1e-43	60.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 182..258 e-value: 4.8E-5 score: 32.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 183..251 e-value: 2.7E-9 score: 36.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 181..267 score: 11.741675
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 177..268 e-value: 1.9E-18 score: 68.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..280
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 30..280
None	No IPR available	PANTHER	PTHR10501:SF53	NUCLEAR SPECKLE RNA-BINDING PROTEIN A-RELATED	coord: 30..280
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 181..263 e-value: 9.44064E-35 score: 118.526
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 156..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G150680.1	CcUC08G150680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding