CcUC08G150220 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G150220
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 18210964 .. 18211191 (+)
RNA-Seq ExpressionCcUC08G150220
SyntenyCcUC08G150220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTCAGAGTGTTGCCGGACGTCAATCGGGTCTCCGAGCTTCCTCCGAACAAGCCGGAGATTGGGTACAGAGTAGGCGGTGGAGAAATGAAATCCGTGATTCCCCGGAAGAGGAAGCTGGTGAAGACGATGATTTACCAGTGTATTAAGGACTTCCTTATATCGCTCCTTCGTCCGTCACCGGAGCTCCACTACCGCCGCCAACCCATTTCCGAAGATTTGTAA

mRNA sequence

ATGCATTTCAGAGTGTTGCCGGACGTCAATCGGGTCTCCGAGCTTCCTCCGAACAAGCCGGAGATTGGGTACAGAGTAGGCGGTGGAGAAATGAAATCCGTGATTCCCCGGAAGAGGAAGCTGGTGAAGACGATGATTTACCAGTGTATTAAGGACTTCCTTATATCGCTCCTTCGTCCGTCACCGGAGCTCCACTACCGCCGCCAACCCATTTCCGAAGATTTGTAA

Coding sequence (CDS)

ATGCATTTCAGAGTGTTGCCGGACGTCAATCGGGTCTCCGAGCTTCCTCCGAACAAGCCGGAGATTGGGTACAGAGTAGGCGGTGGAGAAATGAAATCCGTGATTCCCCGGAAGAGGAAGCTGGTGAAGACGATGATTTACCAGTGTATTAAGGACTTCCTTATATCGCTCCTTCGTCCGTCACCGGAGCTCCACTACCGCCGCCAACCCATTTCCGAAGATTTGTAA

Protein sequence

MHFRVLPDVNRVSELPPNKPEIGYRVGGGEMKSVIPRKRKLVKTMIYQCIKDFLISLLRPSPELHYRRQPISEDL
Homology
BLAST of CcUC08G150220 vs. NCBI nr
Match: KAE8647260.1 (hypothetical protein Csa_018328, partial [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-16
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 1  MHFRVLPDVNRVSELPPNKPEIGY-------RVGGGEMKSVIPRKRKLVKTMIYQCIKDF 60
          MH  +LP  NRVS+LPP+KP   +       RVGG ++KSVIP++RKLVKTMIY  +KDF
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF 60

Query: 61 LISLLRPSPELHYRRQPISED 75
          LISL RPS ++H R +PIS+D
Sbjct: 61 LISLFRPSSDIHNRPKPISKD 81

BLAST of CcUC08G150220 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 12  VSELPPNKPE--------IGYRVGGGEMKSVIPRKRKLVKTMIYQCIKDFLISLLRPSPE 71
           V  L P  PE        +GYR G G++KSVIP+KRKLVKTM+Y CIK+F+ SL R  P+
Sbjct: 92  VLPLTPATPETAVTSTNSLGYRAGVGKVKSVIPKKRKLVKTMMYHCIKNFIKSLFRRPPK 151

Query: 72  LHYRRQPISED 75
            H R +PI++D
Sbjct: 152 THNRPKPITDD 162

BLAST of CcUC08G150220 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 0

Query: 12  VSELPPNKPE--------IGYRVGGGEMKSVIPRKRKLVKTMIYQCIKDFLISLLRPSPE 71
           V  L P KP+        + YR G G++KSVIP+KRKLVKTM+Y CIKDFL SL RP P+
Sbjct: 61  VLPLIPAKPDTAVTSTNSVEYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRPPPK 120

Query: 72  LHYRR-QPISED 75
            H RR +PI  D
Sbjct: 121 THRRRPKPIIHD 132

BLAST of CcUC08G150220 vs. NCBI nr
Match: KAG6602132.1 (hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query: 23  GYRVGGGEMKSVIPRKRKLVKTMIYQCIKDFLISLLRPSPELHYRRQPIS 73
           GYRVG G+ KSVIP++RKLVKTM+Y CIK+FL SL R  PE H R +PI+
Sbjct: 91  GYRVGIGKGKSVIPKRRKLVKTMMYHCIKNFLKSLFRRPPETHNRPKPIT 140

BLAST of CcUC08G150220 vs. NCBI nr
Match: TYK18680.1 (hypothetical protein E5676_scaffold481G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 19 KPEIGYRVGGGEMKSVIPRKRKLVKTMIYQCIKDFLISLLRPSPEL 65
          +P I YR G G MKSVIP+KRKLVK M+Y CIK+++ SL RP+PEL
Sbjct: 22 EPAIVYR-GAGNMKSVIPKKRKLVKRMMYDCIKEWIKSLFRPTPEL 66

BLAST of CcUC08G150220 vs. ExPASy TrEMBL
Match: A0A0A0KDQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.6e-17
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 1  MHFRVLPDVNRVSELPPNKPEIGY-------RVGGGEMKSVIPRKRKLVKTMIYQCIKDF 60
          MH  +LP  NRVS+LPP+KP   +       RVGG ++KSVIP++RKLVKTMIY  +KDF
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF 60

Query: 61 LISLLRPSPELHYRRQPISEDL 76
          LISL RPS ++H R +PIS+DL
Sbjct: 61 LISLFRPSSDIHNRPKPISKDL 82

BLAST of CcUC08G150220 vs. ExPASy TrEMBL
Match: A0A5D3D590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00190 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 19 KPEIGYRVGGGEMKSVIPRKRKLVKTMIYQCIKDFLISLLRPSPEL 65
          +P I YR G G MKSVIP+KRKLVK M+Y CIK+++ SL RP+PEL
Sbjct: 22 EPAIVYR-GAGNMKSVIPKKRKLVKRMMYDCIKEWIKSLFRPTPEL 66

BLAST of CcUC08G150220 vs. ExPASy TrEMBL
Match: A0A6J1CJW3 (uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011963 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-06
Identity = 39/84 (46.43%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 1  MHFRVLPDVNRV----------SELPPNKP------------EIGYRVGGGEMKSVIPRK 60
          M  RV P+ +RV          +EL PN P             IG R  GG++KSVIP++
Sbjct: 1  MQIRVWPENDRVLLKPEPIADGTELAPNNPVMISEMAVTANGAIGSR-AGGKVKSVIPKR 60

Query: 61 RKLVKTMIYQCIKDFLISLLRPSP 63
          R LVKTMIY  IKDF+ISL RP P
Sbjct: 61 RILVKTMIYNFIKDFIISLFRPPP 83

BLAST of CcUC08G150220 vs. ExPASy TrEMBL
Match: A0A0A0KFQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.7e-05
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 1  MHFRVLPDVNRVSELPPNKPEIGYRVGGGEMKSVIPRKRKLVKTMIYQCIKDFLISLLRP 60
          M FRV    N+V         I Y  G G +KSVIP+KR+LVK M+Y CIK+++ SL  P
Sbjct: 1  MKFRVFSGNNQVIPAKSETATIVYG-GAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCP 60

Query: 61 SPEL 65
          +P+L
Sbjct: 61 TPKL 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647260.14.6e-1658.02hypothetical protein Csa_018328, partial [Cucumis sativus][more]
KAG6602131.11.4e-0952.11hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602134.11.9e-0955.56hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602132.12.1e-0866.00hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK18680.13.3e-0665.22hypothetical protein E5676_scaffold481G00190 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDQ77.6e-1758.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
A0A5D3D5901.6e-0665.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1CJW33.6e-0646.43uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A0A0KFQ16.7e-0546.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G150220.1CcUC08G150220.1mRNA