CcUC08G149070 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G149070
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RRM domain-containing protein
Location	CicolChr08: 14911863 .. 14915197 (-)
RNA-Seq Expression	CcUC08G149070
Synteny	CcUC08G149070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCAACGAAGGATGATCAATTTGCCATGTTTGAGGAGAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCTCCCCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTTGTTAGCGTCCATTTTATCCCAAACTACACAGAGCCAATTAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGATTTGAAGGAGGCGAAGTCTGTTATCTCCGTGATATCTCAGTTCCCTTTCATGATATCTGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTGTAAAGCCTGGTAGGAAGATTAGCTTTACCTGGCTGGAAAAGGATGATCCTGATTTTGAAGTGGCCAAGAAAATTAAGCTTCTTACTCAGAAACATGTGGCCGAAGTTACATTCTTGCTGAAGGCATGAGTTTCAAAACCCATCTATTATGGTTGTTCTTATTTAGTGCTTGAATTTTAAAAAGTTTGAATTACATATCCGAACTTTGAATTGTGATTCTTAGAGGATGTGAGATATTTAGTAGACAAACGTTAGTTAATTTAGCACAATGTGGCATAGGTGACAAAAGACAGAGGCTAGGTAGCAACATGCCTTGTAGATTGTTATCACTCTATTTTGTTTAGCTATCCTATCTCTCGTCTTCCATTTTCGTGCCACGTTGTGCTAAATCAATCCATTAGCATTTGTTTATCTAATAAGAGTATTGGAATCATAATTGAAAGTTTGTGTATGTAATTAGAACCTTTTAAAATTTTAAAATTAAATAAACACAACCATTAACGTTTGGACTACATTTTGAATGTGGTCAAATTATAAGCTGGGTCCCACAACTTTGAGATTTTCTCGTGATTATTTAGTTCATATACTTTTAAATCTCTCTAGTAGGTCTCCTCAATTTTCCGCTTGTGTCTGTTTAATCCTTATACTTTAAAAGAATATAATAGCTTTCTAGCTTTTAGGTTCGGTCTATTTAACCCTCATTTTTATAAAAAAGGGTAATTACAAAGGGAATATTTTTAGGGTTGATAATCAAGTGTATAGCAACATTTTTAAAGAATTGCAAATATAACAAAATCTATTAATGATAGACTCTATCGCTGATGTACCTGTTAGTGGTAGACTTTGAGAGCTGGATTTAAATTTTGATATATGTGCAAATTCTTTGTGCTATATCTGTTAATACTTTGAGCTTGGTTGCTATATTTGCAACTGTCCTTTTAATATACTTGAAATCAACCGATTTGTGTACCGCTCAAGTAAGTGTTAAGTGGTGGAGTAAACTACGAGATCTATTAGGCACAAAGTTAAAAAGTTAGACACATTTTGAAGTACAAAGATTAAGTCGATACGATCTTGAAAGATTAAGTAGATGCGATATTGAAAGCCTTGAATCTATTAGAAAGCCTTTGAAATATAGGATTAAGTAAACACAACTCTAAAAGTTTAGGGATCATATTGGTAATTTGGGCTAACATAGATTACTCCAATTCCTCTGCAGCACCATTTGGCGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAGTTTCAGATGATTAATTGAAAGCTTTGAAGCTTTGCTTTTGTAACTCCTAATGCCCCCTGATTTTTACATGTAAATATGTACAAATGGTCATTGATATGCCCAATATTGATGAATAAGAGACTTCTTTTGTGATTTAGAGGGAGAAAGATAGATAATTAGTATAATACTCCTAACAACACTCTTTTGCATTTCAGCCCCCCCCCCCTCCTCCCTCCCTTTTTTTCTTTCTATTTTTTTTTCCTCTCCTAACATTGTATTTTCCCATCATGAAGGGTGTTTTATGAAAATTTGAACACTTGTTTGGTAGTGACTTTGGTCATGATATTTTATTTTAAGAGAGTTTCAGAGGGAGAATTCACTGTGTACTTTGAACTCAGCATAATGTAAACTTTTAGCTTAAACTTTCTGTTCATTGGAGCAAGTGTCATATATTTTATCTTTCAATTACTGTTGTATTCATCCACTAATTTTAACAAAAGTAGAGGTGACCATTAGTTGGCTGGCGTCGGTTTTGAGCGAAAACCGCCGATGGCCACTGACAAATTGGTTTCTATTGGTTGGTTTTTGGCAGTTTTAGGGTCAGTGGAGACGTCGTTTGGCGACCACACGAATGGTTGGTTGGTTTTTATAGGTTTTCAGAGGTGAACTTTGCTGTTGTGGAGATGAGAATAGAAGAAAGGGAGAAGAAAAGACAAATGACAACGTTGGTTATAGAGTTATTGGCTGGTGGCTTCGATAGATAGTGTGCACCACGATCTTGGTCATGGAAGACTTCTTGAAGGAAAACTTGAAAAAAAAGAGAAAAAAAGAAAAAAAATCGGATGAGACAATTAGTCCCTAAGTTTTAAGAATAGGTTTAATGGGTTCCTCAATATTAACAGACTGTTAAATGCAAACAGAAATCTAACTGGACATCCACATGGCCGCTGATTAGACTTTAAAAATTGTCCAAATAGACTTTTATTTTTAAACCAAATCAAATTTTAGAAAATAAAACCTTAGAATCCATTAAACCCACCTAATTTCTTTTCTCAAATTGCAACTTCGCAACCTTCAGCCTCTTACCCCTATAAAAATCAATCGATAATCTTCTTGGTCTTCATCACCGGTCATTTCAGCCGGCAAATTCCGCATCTTCGATGAGTATTTGATTCACGAGGATGAAGCTTCATCTTCGTTGGTAAGTACAAATTAATCCCACTTCCTTCACGGATAGCTTTTACCTTTGGGATGATTGAGGGAACAACTTCACCAGTGAAACTAGGGTGAAAATTAATTGTGATCTGAAACATCCTTTGGGGATGACTGAGGGTACCACTTCCTTTGGGGCTCTGATGATTCTATTTCAATCGGGAGTTCTAATTGAGCGGCTTTATCATCGATGAATTCCGACTACAAATCCATCATGGCAGAAAGATGGCGAATTCCGATTGAGCAGCTTAATAATGAAGTAAAAGCTACAAAGATGGTGATGGGAACATACTATGCGGAGACGATCATGGATAAAGATGCTCCCATTGCAGTTTGATTATTTTAATATAGTGTTGGAGAAGCAGAATTTGATTGCAATTTTAATATCTATTTTAACAATAACAAATGTTGGTTTGGGGATGATTGTGAAATTCAGTATAAAATTAATATTGATTTTATGTT

mRNA sequence

ATGGGATCAACGAAGGATGATCAATTTGCCATGTTTGAGGAGAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCTCCCCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTTGTTAGCGTCCATTTTATCCCAAACTACACAGAGCCAATTAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGATTTGAAGGAGGCGAAGTCTGTTATCTCCGTGATATCTCAGTTCCCTTTCATGATATCTGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTGTAAAGCCTGGTAGGAAGATTAGCTTTACCTGGCTGGAAAAGGATGATCCTGATTTTGAAGTGGCCAAGAAAATTAAGCTTCTTACTCAGAAACATGTGGCCGAAAGGATCTATCCTATCTCTCGTCTTCCATTTTCGTGCCACGTTGTGCTAAATCAATCCATTAGCATTTGTTTATCTAATAAGAGTATTGGAATCATAATTGAAAGTTTGTTTCATATACTTTTAAATCTCTCTAGTAGGTCTCCTCAATTTTCCGCTTGTCACCATTTGGCGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAGTTTCAGATGATTAATTGAAAGCTTTGAAGCTTTGCTTTTGTAACTCCTAATGCCCCCTGATTTTTACATGTAAATATGTACAAATGGTCATTGATATGCCCAATATTGATGAATAAGAGACTTCTTTTGTGATTTAGAGGGAGAAAGATAGATAATTAGTATAATACTCCTAACAACACTCTTTTGCATTTCAGCCCCCCCCCCCTCCTCCCTCCCTTTTTTTCTTTCTATTTTTTTTTCCTCTCCTAACATTGTATTTTCCCATCATGAAGGGTGTTTTATGAAAATTTGAACACTTGTTTGGTAGTGACTTTGGTCATGATATTTTATTTTAAGAGAGTTTCAGAGGGAGAATTCACTGTGTACTTTGAACTCAGCATAATGTAAACTTTTAGCTTAAACTTTCTGTTCATTGGAGCAAGTGTCATATATTTTATCTTTCAATTACTGTTGTATTCATCCACTAATTTTAACAAAAGTAGAGGTGACCATTAGTTGGCTGGCGTCGGTTTTGAGCGAAAACCGCCGATGGCCACTGACAAATTGGTTTCTATTGGTTGGTTTTTGGCAGTTTTAGGGTCAGTGGAGACGTCGTTTGGCGACCACACGAATGGTTGGTTGGTTTTTATAGGTTTTCAGAGGTGAACTTTGCTGTTGTGGAGATGAGAATAGAAGAAAGGGAGAAGAAAAGACAAATGACAACGTTGGTTATAGAGTTATTGGCTGGTGGCTTCGATAGATAGTGTGCACCACGATCTTGGTCATGGAAGACTTCTTGAAGGAAAACTTGAAAAAAAAGAGAAAAAAAGAAAAAAAATCGGATGAGACAATTAGTCCCTAAGTTTTAAGAATAGGTTTAATGGGTTCCTCAATATTAACAGACTGTTAAATGCAAACAGAAATCTAACTGGACATCCACATGGCCGCTGATTAGACTTTAAAAATTGTCCAAATAGACTTTTATTTTTAAACCAAATCAAATTTTAGAAAATAAAACCTTAGAATCCATTAAACCCACCTAATTTCTTTTCTCAAATTGCAACTTCGCAACCTTCAGCCTCTTACCCCTATAAAAATCAATCGATAATCTTCTTGGTCTTCATCACCGGTCATTTCAGCCGGCAAATTCCGCATCTTCGATGAGTATTTGATTCACGAGGATGAAGCTTCATCTTCGTTGGTAAGTACAAATTAATCCCACTTCCTTCACGGATAGCTTTTACCTTTGGGATGATTGAGGGAACAACTTCACCAGTGAAACTAGGGTGAAAATTAATTGTGATCTGAAACATCCTTTGGGGATGACTGAGGGTACCACTTCCTTTGGGGCTCTGATGATTCTATTTCAATCGGGAGTTCTAATTGAGCGGCTTTATCATCGATGAATTCCGACTACAAATCCATCATGGCAGAAAGATGGCGAATTCCGATTGAGCAGCTTAATAATGAAGTAAAAGCTACAAAGATGGTGATGGGAACATACTATGCGGAGACGATCATGGATAAAGATGCTCCCATTGCAGTTTGATTATTTTAATATAGTGTTGGAGAAGCAGAATTTGATTGCAATTTTAATATCTATTTTAACAATAACAAATGTTGGTTTGGGGATGATTGTGAAATTCAGTATAAAATTAATATTGATTTTATGTT

Coding sequence (CDS)

ATGGGATCAACGAAGGATGATCAATTTGCCATGTTTGAGGAGAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCTCCCCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTTGTTAGCGTCCATTTTATCCCAAACTACACAGAGCCAATTAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGATTTGAAGGAGGCGAAGTCTGTTATCTCCGTGATATCTCAGTTCCCTTTCATGATATCTGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTGTAAAGCCTGGTAGGAAGATTAGCTTTACCTGGCTGGAAAAGGATGATCCTGATTTTGAAGTGGCCAAGAAAATTAAGCTTCTTACTCAGAAACATGTGGCCGAAAGGATCTATCCTATCTCTCGTCTTCCATTTTCGTGCCACGTTGTGCTAAATCAATCCATTAGCATTTGTTTATCTAATAAGAGTATTGGAATCATAATTGAAAGTTTGTTTCATATACTTTTAAATCTCTCTAGTAGGTCTCCTCAATTTTCCGCTTGTCACCATTTGGCGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAGTTTCAGATGATTAA

Protein sequence

MGSTKDDQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFTWLEKDDPDFEVAKKIKLLTQKHVAERIYPISRLPFSCHVVLNQSISICLSNKSIGIIIESLFHILLNLSSRSPQFSACHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYNMRVSDD

Homology

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BLAST of CcUC08G149070 vs. NCBI nr
Match: XP_038886330.1 (uncharacterized protein LOC120076542 [Benincasa hispida])

HSP 1 Score: 345.9 bits (886), Expect = 2.9e-91
Identity = 184/246 (74.80%), Postives = 192/246 (78.05%), Query Frame = 0


Query: 1   MGSTKDDQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KD+QFAMFEEKVKRTVYVDNLSP VTEPVLRTALDQFGTVVSVHFIPNYTEPIN+S
Sbjct: 1   MGSMKDEQFAMFEEKVKRTVYVDNLSPHVTEPVLRTALDQFGTVVSVHFIPNYTEPINTS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120
           QCALVEMKDLKEAKSVISVI+QFPFM+SGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL
Sbjct: 61  QCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAERIYPISRLPFSCHVVLNQSISICLSNKSIGIIIESLF 180
           EKDDPDFEVAKK+KLLT+KHVAE  + +                                
Sbjct: 121 EKDDPDFEVAKKMKLLTRKHVAEAAFLLK------------------------------- 180

Query: 181 HILLNLSSRSPQFSACHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYN 240
                           HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAK YN
Sbjct: 181 ----------------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKRYN 199

Query: 241 MRVSDD 247
           MRVSDD
Sbjct: 241 MRVSDD 199

[Close]

BLAST of CcUC08G149070 vs. NCBI nr
Match: XP_004138411.1 (uncharacterized protein LOC101221287 [Cucumis sativus] >KGN45809.1 hypothetical protein Csa_005005 [Cucumis sativus])

HSP 1 Score: 328.9 bits (842), Expect = 3.6e-86
Identity = 174/246 (70.73%), Postives = 188/246 (76.42%), Query Frame = 0


Query: 1   MGSTKDDQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KD+QFAMFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120
           QCALVEMKD KEAKSVI+VI+QFPFM+SGMPRPVRARPAEVEMFDDRPVKPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAERIYPISRLPFSCHVVLNQSISICLSNKSIGIIIESLF 180
           E DDPDFEVA++IK L++KHVAE  + + +                              
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQ------------------------------ 180

Query: 181 HILLNLSSRSPQFSACHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYN 240
                            H+AEEEKLAKQQQE LKGNYKKYEIV+SVMADGTARRLAKHYN
Sbjct: 181 -----------------HMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYN 199

Query: 241 MRVSDD 247
           MR+SDD
Sbjct: 241 MRISDD 199

[Close]

BLAST of CcUC08G149070 vs. NCBI nr
Match: XP_008441485.1 (PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo])

HSP 1 Score: 327.8 bits (839), Expect = 8.1e-86
Identity = 173/246 (70.33%), Postives = 188/246 (76.42%), Query Frame = 0


Query: 1   MGSTKDDQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KD+QF+MFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNYTEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120
           QCALVEMKD KEAKSVI+VI+QFPFM+SGMPRPVRARPAE EMFDDRPVKPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAERIYPISRLPFSCHVVLNQSISICLSNKSIGIIIESLF 180
           E DDPDFEVA++IK LT+KHVAE  + + +                              
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQ------------------------------ 180

Query: 181 HILLNLSSRSPQFSACHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYN 240
                            HLAEEEKLAKQQQE L+GNYKKYEIV+SVMADGTARRLAK+YN
Sbjct: 181 -----------------HLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYN 199

Query: 241 MRVSDD 247
           MRVSDD
Sbjct: 241 MRVSDD 199

[Close]

BLAST of CcUC08G149070 vs. NCBI nr
Match: XP_023004840.1 (uncharacterized protein LOC111498019 [Cucurbita maxima])

HSP 1 Score: 313.2 bits (801), Expect = 2.1e-81
Identity = 166/246 (67.48%), Postives = 181/246 (73.58%), Query Frame = 0


Query: 1   MGSTKDDQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS  D+Q+A FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120
           QCALVEMKD KEA SVISVISQFPFM+SGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAERIYPISRLPFSCHVVLNQSISICLSNKSIGIIIESLF 180
            K+DPDFEVAKK+K LTQ+HVAE  + + +                              
Sbjct: 121 GKEDPDFEVAKKMKCLTQRHVAEAAFLLKQ------------------------------ 180

Query: 181 HILLNLSSRSPQFSACHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYN 240
                             L EEEKLAKQQQ+ALKGNYKKYEI+E VM DGTARRLA+ YN
Sbjct: 181 -----------------QLVEEEKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYN 199

Query: 241 MRVSDD 247
           MRV+DD
Sbjct: 241 MRVADD 199

[Close]

BLAST of CcUC08G149070 vs. NCBI nr
Match: KAG6592987.1 (hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 312.4 bits (799), Expect = 3.5e-81
Identity = 166/246 (67.48%), Postives = 180/246 (73.17%), Query Frame = 0


Query: 1   MGSTKDDQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS  D+Q+A FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 59  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 118

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120
           QCALVEMKD KEA SVISVI+QFPFM+SGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 119 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 178

Query: 121 EKDDPDFEVAKKIKLLTQKHVAERIYPISRLPFSCHVVLNQSISICLSNKSIGIIIESLF 180
            KDDPDFEVAKK+K LTQ+HVAE  + + +                              
Sbjct: 179 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQ------------------------------ 238

Query: 181 HILLNLSSRSPQFSACHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYN 240
                             L EEEKLAKQQQ+ALK NYKKYEIVE VM DGTARRLA+ YN
Sbjct: 239 -----------------QLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYN 257

Query: 241 MRVSDD 247
           MRV+DD
Sbjct: 299 MRVADD 257

[Close]

BLAST of CcUC08G149070 vs. ExPASy TrEMBL
Match: A0A0A0KAE7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013320 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.8e-86
Identity = 174/246 (70.73%), Postives = 188/246 (76.42%), Query Frame = 0


Query: 1   MGSTKDDQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KD+QFAMFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120
           QCALVEMKD KEAKSVI+VI+QFPFM+SGMPRPVRARPAEVEMFDDRPVKPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAERIYPISRLPFSCHVVLNQSISICLSNKSIGIIIESLF 180
           E DDPDFEVA++IK L++KHVAE  + + +                              
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQ------------------------------ 180

Query: 181 HILLNLSSRSPQFSACHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYN 240
                            H+AEEEKLAKQQQE LKGNYKKYEIV+SVMADGTARRLAKHYN
Sbjct: 181 -----------------HMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYN 199

Query: 241 MRVSDD 247
           MR+SDD
Sbjct: 241 MRISDD 199

[Close]

BLAST of CcUC08G149070 vs. ExPASy TrEMBL
Match: A0A1S3B3J3 (uncharacterized protein LOC103485592 OS=Cucumis melo OX=3656 GN=LOC103485592 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.9e-86
Identity = 173/246 (70.33%), Postives = 188/246 (76.42%), Query Frame = 0


Query: 1   MGSTKDDQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KD+QF+MFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNYTEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120
           QCALVEMKD KEAKSVI+VI+QFPFM+SGMPRPVRARPAE EMFDDRPVKPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAERIYPISRLPFSCHVVLNQSISICLSNKSIGIIIESLF 180
           E DDPDFEVA++IK LT+KHVAE  + + +                              
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQ------------------------------ 180

Query: 181 HILLNLSSRSPQFSACHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYN 240
                            HLAEEEKLAKQQQE L+GNYKKYEIV+SVMADGTARRLAK+YN
Sbjct: 181 -----------------HLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYN 199

Query: 241 MRVSDD 247
           MRVSDD
Sbjct: 241 MRVSDD 199

[Close]

BLAST of CcUC08G149070 vs. ExPASy TrEMBL
Match: A0A6J1KVQ1 (uncharacterized protein LOC111498019 OS=Cucurbita maxima OX=3661 GN=LOC111498019 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.0e-81
Identity = 166/246 (67.48%), Postives = 181/246 (73.58%), Query Frame = 0


Query: 1   MGSTKDDQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS  D+Q+A FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120
           QCALVEMKD KEA SVISVISQFPFM+SGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAERIYPISRLPFSCHVVLNQSISICLSNKSIGIIIESLF 180
            K+DPDFEVAKK+K LTQ+HVAE  + + +                              
Sbjct: 121 GKEDPDFEVAKKMKCLTQRHVAEAAFLLKQ------------------------------ 180

Query: 181 HILLNLSSRSPQFSACHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYN 240
                             L EEEKLAKQQQ+ALKGNYKKYEI+E VM DGTARRLA+ YN
Sbjct: 181 -----------------QLVEEEKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYN 199

Query: 241 MRVSDD 247
           MRV+DD
Sbjct: 241 MRVADD 199

[Close]

BLAST of CcUC08G149070 vs. ExPASy TrEMBL
Match: A0A6J1H6P8 (uncharacterized protein LOC111460615 OS=Cucurbita moschata OX=3662 GN=LOC111460615 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.1e-80
Identity = 164/246 (66.67%), Postives = 179/246 (72.76%), Query Frame = 0


Query: 1   MGSTKDDQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS  D+Q+  FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 1   MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120
           QCALVEMKD KEA SVIS+I+QFPFM+SGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAERIYPISRLPFSCHVVLNQSISICLSNKSIGIIIESLF 180
            KDDPDFEVAKK+K LTQ+HVAE  + + +                              
Sbjct: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQ------------------------------ 180

Query: 181 HILLNLSSRSPQFSACHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYN 240
                             L EEEKLAKQQQ+ALK NYKKYEIVE VM DGTARRLA+ YN
Sbjct: 181 -----------------QLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYN 199

Query: 241 MRVSDD 247
           MRV+DD
Sbjct: 241 MRVADD 199

[Close]

BLAST of CcUC08G149070 vs. ExPASy TrEMBL
Match: A0A6J1DB90 (uncharacterized protein LOC111018537 OS=Momordica charantia OX=3673 GN=LOC111018537 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.0e-78
Identity = 161/246 (65.45%), Postives = 180/246 (73.17%), Query Frame = 0


Query: 1   MGSTKDDQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS  ++QFA FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPNY EP+NSS
Sbjct: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120
           QCALVEMKDLKEAKSVISVI++FPFMISGMPRPVRARPAEVEMFDDRP+KPG KISF+WL
Sbjct: 61  QCALVEMKDLKEAKSVISVIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAERIYPISRLPFSCHVVLNQSISICLSNKSIGIIIESLF 180
           +++DPDF+VAKK+KL T+KH AE  + + +                              
Sbjct: 121 DQNDPDFQVAKKMKLFTRKHAAETAFLLKQ------------------------------ 180

Query: 181 HILLNLSSRSPQFSACHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYN 240
                             L EEEKLAKQQQE LKGNYKK+EIVESVM DGTARRLAK Y+
Sbjct: 181 -----------------QLLEEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYD 199

Query: 241 MRVSDD 247
           MRV DD
Sbjct: 241 MRVFDD 199

[Close]

BLAST of CcUC08G149070 vs. TAIR 10
Match: AT1G05970.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 162.9 bits (411), Expect = 3.2e-40
Identity = 89/242 (36.78%), Postives = 134/242 (55.37%), Query Frame = 0


Query: 1   MGSTKDDQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120
              LVEM++ +  ++VIS +SQ PFM++GMPRPVRA  AE  MF D+P KPGR + F W+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAERIYPISRLPFSCHVVLNQSISICLSNKSIGIIIESLF 180
           + +DPDF+ A+++K L +KH AE  + + +                              
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLKK------------------------------ 180

Query: 181 HILLNLSSRSPQFSACHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYN 240
                             L E EKL+KQQ E    ++KK+E+++ ++ DG A++LA  Y+
Sbjct: 181 -----------------QLEEAEKLSKQQAETAVTHHKKFEMMDKLLYDGVAQKLAGRYD 195

Query: 241 MR 243
           ++
Sbjct: 241 LK 195

[Close]

BLAST of CcUC08G149070 vs. TAIR 10
Match: AT1G05970.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 161.8 bits (408), Expect = 7.1e-40
Identity = 89/242 (36.78%), Postives = 133/242 (54.96%), Query Frame = 0


Query: 1   MGSTKDDQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMISGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120
              LVEM++ +  ++VIS +SQ PFM++GMPRPVRA  AE  MF D+P KPGR + F W+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAERIYPISRLPFSCHVVLNQSISICLSNKSIGIIIESLF 180
           + +DPDF+ A+++K L +KH AE  + +                                
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLK------------------------------- 180

Query: 181 HILLNLSSRSPQFSACHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYN 240
                             L E EKL+KQQ E    ++KK+E+++ ++ DG A++LA  Y+
Sbjct: 181 ------------------LEEAEKLSKQQAETAVTHHKKFEMMDKLLYDGVAQKLAGRYD 193

Query: 241 MR 243
           ++
Sbjct: 241 LK 193

The following BLAST results are available for this feature:

BLAST of CcUC08G149070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886330.1	2.9e-91	74.80	uncharacterized protein LOC120076542 [Benincasa hispida]	[more]
XP_004138411.1	3.6e-86	70.73	uncharacterized protein LOC101221287 [Cucumis sativus] >KGN45809.1 hypothetical ...	[more]
XP_008441485.1	8.1e-86	70.33	PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]	[more]
XP_023004840.1	2.1e-81	67.48	uncharacterized protein LOC111498019 [Cucurbita maxima]	[more]
KAG6592987.1	3.5e-81	67.48	hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC08G149070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC08G149070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAE7	1.8e-86	70.73	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013320 PE=4 SV...	[more]
A0A1S3B3J3	3.9e-86	70.33	uncharacterized protein LOC103485592 OS=Cucumis melo OX=3656 GN=LOC103485592 PE=...	[more]
A0A6J1KVQ1	1.0e-81	67.48	uncharacterized protein LOC111498019 OS=Cucurbita maxima OX=3661 GN=LOC111498019...	[more]
A0A6J1H6P8	1.1e-80	66.67	uncharacterized protein LOC111460615 OS=Cucurbita moschata OX=3662 GN=LOC1114606...	[more]
A0A6J1DB90	1.0e-78	65.45	uncharacterized protein LOC111018537 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of CcUC08G149070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05970.2	3.2e-40	36.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G05970.1	7.1e-40	36.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 19..97 e-value: 5.5E-5 score: 32.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 20..78 e-value: 3.1E-7 score: 30.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 18..101 score: 11.110626
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..106 e-value: 1.2E-12 score: 49.9
None	No IPR available	PANTHER	PTHR36309	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 197..245 coord: 6..145
None	No IPR available	CDD	cd00590	RRM_SF	coord: 20..78 e-value: 1.06477E-8 score: 48.8405
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 10..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G149070.1	CcUC08G149070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding