CcUC08G148370 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G148370
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationCicolChr08: 11429211 .. 11432298 (+)
RNA-Seq ExpressionCcUC08G148370
SyntenyCcUC08G148370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTTGATTGTCTCCATAAGTAAACCTAATGTATTCTTCCCCTTAAAAAAGTAAGCCCAATTTATTCCCTTCTTGGAAAAGTAAACCCAATTTATTCCCCCTTTAAAACCCATATCTTTCTCTTATAGTGCCCAAATTTTTCCTTAGTTTGTTTGCCTCCTTGACCTACCAAGACAAGATTTATGAGTTTTTTTGTCCTCGACAAATTACTTAAATATTTGTATCCCCCCCACTCGATAAGCAAACATTGGTTGACAGATATGGTTTGAAAACCAATTTATGATACTAAACAACCACTACCAATCCTAGACAGTGGGCTTAATGGATAGCTTGGACAGAGTTCAATTGAACGGCACCTCCAATCATACTTCATACATCCATGGTCACCTTGCTCAAACTCCTCAGAGAAAATTCAAACATCCCAAGGACTTTGAACTAGGTGCCCTCAATAGAAGGATTCAAGTCAATCATCTTGGTATATTCATCTACATCTATATTAACAAAAAAAGGAACCATCTTTTAACTAAAGGTTTAATCTTAAATATGAAATAACAGGTAAGCAAGAGCAAATACACAGATTTTCTTTTGGACCAAATGATGATACTTGAGTTTGGTTTCTTGAACTTTCAGAACTAAAGTTTCCGTATTGCTCAATGGAGTTTTCCAACATCCCAAAGCCATTACTTTGGATAAAGGCAGTTAAAACAATTATTACATAACTTTGGTTGGAGATGAATCAATGCATCTTCCATGATCATCTACCTGGATTTCAATGTTTTGAATTAGCTCGTTCGAAGACAGATATGGTGTTCCAAATTATTTAGGGTTTCCTACTCACATGTGGGCTTGAAATATGAAAAAGACCCTACAAGTGGAAATCAATATTAATTGGGGAGGAAATTACTTTGTAGGGGTTTGAACATACGACCTCTTTGGACCACCTACTTTTATACTATCTTAAATCGTCGATTGACCCAAAAGTTTAAGCTAATGGGTGAAGGAAAAACTAATATTATATCATCTAACTGTATCTTTCAAGCAATAGTCTCTTTTCATTAATATATTAATGAAAAGTCCGTTTTTTGTTTCAAAAAAAAAAAAAAAAAGGCACATACACAGATTGGCGTTTCCAATGAATCTTGAAACCGCTTAAATATAAAGGCTCACCTCTCTTTCCGTCAGTTATTAATTTGTTGAGAGCATCTCCGCTGGACTTGGGAAGCATCACAACAGGAATTGAAATGTTGAGAGAAGTGTCTTTTTCAGAACAGACCATCTTGTAAAGATCTAAATCAACAGAAAAACAGTTTCCAAATTCATTATCTAAAATTAGGTTGATAAATCCATCAAAACATATAGGCAGTTAACTTCTTTCTAGATTTGAAATATATTCTTGGATTACTCAACCAATCATTATAAAAGTAGATGGAGAGTCAAAAATACTCATGCTAAATTACAGTTCTTTTCTTTAATGAAAGAACAGGGCTGGAATAAAAATGAAAGAATACATAAGACAGGACATAAGGCTTCCACTAGCATTAAAAATTTATCATAAGCAGAAAACATCATGAAAAACTGCAAAGTCTAGATAAAAGTAATATACGATAAAACGTTCACACATTCAAGATTAAAAAAGGAAATTTCAATAATTTGGACATACTGCATAATCATAAAAATCCTCTTCAAATTTTACACTGCAGTTCAAAAAAGTTCGGTCCAAACAACAAGTTATGTCATGATGCATTTTAACTCATTCATAGATCAACATGAATTGACTGATCTCCTTCTCACTAATGGAAGATCCACATGGTCGGATTTCAGATTTCCAACTACCCATACTTCCATCCACCGTTTCTTTTGCACTCAATCAGTTCTAATTAAGTTTAAGGATGCCATGGTTAAAAGGCTCGGAAGATCCACCTCTGACCACTATCCTCTTATGTTGACTTTAGGTAGCCAAAGATGGGGCCGTCTCCATTCAAGTTTGAAAATATGTGGCTGAATCATAAAGATTTTCTCTATCTCATGGATGCATGGTATATTAACCACCCTCTCATTGGATGGTCAGTCCAAGGGTTCATTCACAAGTTAAAGGGGTGAAATTCGCAATAAAGAAATGGACCTTTCCAACCATCGTGGGTTAGCCTGGTGGTAAAAAGGAGACAGTCTCAATAAATGACTAAGAGGTCAAGGGTTCAATCTATGGTGGCCACTTATCGATGAATTAATTTCCTACGAGTTTTCTTGACACCCAAATGTTGTAGGGTCAGGCAGGTTATCCCGAAAAAAAAAAAAAAAGAAAAAAAAATAAAAGAAAAAGGAAAAAGGAAAAAGGAATGGACCTTTCCACCTTTGCAATCACTAAATCTACCCTCATCAAGGAATTGTCCCTTATCAACAAAGAGGCAGAGGTAAACTCAAAGGAGCATGTTTTACCGAAAAATCATACTAGACCTCCTACTCTATTGAAATATAGTAGGAAGGGTAAAAGGGGGGCTGCTTATGTAATGGGAAGTCTCCTATTCTATTGAAATATAGTAGGAAGGGTAAAAGGGGGGCTGCTTATGTAATGGGAAGTGTGGCTTCAGCCACTAATTGTGAGAGAGTGTGGCCCACAATTAGTTAGCAAATAAATGGAAGGGCTTTAAATGTGTGTCGAGGGGGAAAGTCAATTTTTTAGTTCTCATTTTAGAAGAGTTGCAATCGGGTTCTCTTCAGTAAGGAGGGAAAACTCGTTAAGTCCCTCTGTGGAACCGTGTCTACATTTTGCCTAAGGGCCTTTTCCAATTGAATAAGACTTTCCGCATTTGAGTCTTATCAAATTGTTACCAGAGCATCAAATTGTGACGAATTGCGAGAATGGCGCAAAAGAGAATCGAAGATCAGTTGGAGGCTTTAGACCAAGAGTTTTTCAGTTGCAGTTGGAAGGCGGATATTCAGAAGTTGCTAACCATTGAAGAATCGATTGCGACATTGGCAAAAATTGTGGAACGATTGAGTTCACAAGTCAATAAACAACATCGAACATCCGAGGATACTCAGAAGTTAATGATTGCACTAATGGCGAAAGGAAAGAAACTGTAG

mRNA sequence

ATGGTGACAGTGGGCTTAATGGATAGCTTGGACAGAGTTCAATTGAACGGCACCTCCAATCATACTTCATACATCCATGGTCACCTTGCTCAAACTCCTCAGAGAAAATTCAAACATCCCAAGGACTTTGAACTAGGTGCCCTCAATAGAAGGATTCAAGTCAATCATCTTGTTCAAAAAAGTTCGGTCCAAACAACAAGTTATGTCATGATGCATTTTAACTCATTCATAGATCAACATGAATTGACTGATCTCCTTCTCACTAATGGAAGATCCACATGGTCGGATTTCAGATTTCCAACTACCCATACTTCCATCCACCGTTTCTTTTGCACTCAATCAGTTCTAATTAAGTTTAAGGATGCCATGGTTAAAAGGCTCGGAAGATCCACCTCTGACCACTATCCTCTTATGTTGACTTTAGGTAGCCAAAGATGGGGCCGTCTCCATTCAAGACGAATTGCGAGAATGGCGCAAAAGAGAATCGAAGATCAGTTGGAGGCTTTAGACCAAGAGTTTTTCAGTTGCAGTTGGAAGGCGGATATTCAGAAGTTGCTAACCATTGAAGAATCGATTGCGACATTGGCAAAAATTGTGGAACGATTGAGTTCACAAGTCAATAAACAACATCGAACATCCGAGGATACTCAGAAGTTAATGATTGCACTAATGGCGAAAGGAAAGAAACTGTAG

Coding sequence (CDS)

ATGGTGACAGTGGGCTTAATGGATAGCTTGGACAGAGTTCAATTGAACGGCACCTCCAATCATACTTCATACATCCATGGTCACCTTGCTCAAACTCCTCAGAGAAAATTCAAACATCCCAAGGACTTTGAACTAGGTGCCCTCAATAGAAGGATTCAAGTCAATCATCTTGTTCAAAAAAGTTCGGTCCAAACAACAAGTTATGTCATGATGCATTTTAACTCATTCATAGATCAACATGAATTGACTGATCTCCTTCTCACTAATGGAAGATCCACATGGTCGGATTTCAGATTTCCAACTACCCATACTTCCATCCACCGTTTCTTTTGCACTCAATCAGTTCTAATTAAGTTTAAGGATGCCATGGTTAAAAGGCTCGGAAGATCCACCTCTGACCACTATCCTCTTATGTTGACTTTAGGTAGCCAAAGATGGGGCCGTCTCCATTCAAGACGAATTGCGAGAATGGCGCAAAAGAGAATCGAAGATCAGTTGGAGGCTTTAGACCAAGAGTTTTTCAGTTGCAGTTGGAAGGCGGATATTCAGAAGTTGCTAACCATTGAAGAATCGATTGCGACATTGGCAAAAATTGTGGAACGATTGAGTTCACAAGTCAATAAACAACATCGAACATCCGAGGATACTCAGAAGTTAATGATTGCACTAATGGCGAAAGGAAAGAAACTGTAG

Protein sequence

MVTVGLMDSLDRVQLNGTSNHTSYIHGHLAQTPQRKFKHPKDFELGALNRRIQVNHLVQKSSVQTTSYVMMHFNSFIDQHELTDLLLTNGRSTWSDFRFPTTHTSIHRFFCTQSVLIKFKDAMVKRLGRSTSDHYPLMLTLGSQRWGRLHSRRIARMAQKRIEDQLEALDQEFFSCSWKADIQKLLTIEESIATLAKIVERLSSQVNKQHRTSEDTQKLMIALMAKGKKL
Homology
[Close]
BLAST of CcUC08G148370 vs. NCBI nr
Match: TYK01796.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-08
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 70   MMHFNSFIDQHELTDLLLTNGRSTWSDFRFPTTHTSIHRFFCTQSVLIKFKDAMVKRLGR 129
            M  FNSFI+Q +L D  L+NG  TW+DFR P THT I RF  T++++ KF DA V RL  
Sbjct: 1584 MSAFNSFIEQRDLIDSPLSNGSYTWTDFRNPPTHTKIDRFLYTETMINKFSDAFVNRL-- 1643

Query: 130  STSDHYPLMLTLG 143
                 + L+LTLG
Sbjct: 1644 ----DFSLLLTLG 1650

[Close]
BLAST of CcUC08G148370 vs. NCBI nr
Match: KAA0052233.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-08
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 70   MMHFNSFIDQHELTDLLLTNGRSTWSDFRFPTTHTSIHRFFCTQSVLIKFKDAMVKRLGR 129
            M  FNSFI+Q +L D  L+NG  TW+DFR P THT I RF  T++++ KF DA V RL  
Sbjct: 937  MSAFNSFIEQRDLIDSPLSNGSYTWTDFRNPPTHTKIDRFLYTETMINKFSDAFVNRL-- 996

Query: 130  STSDHYPLMLTLG 143
                 + L+LTLG
Sbjct: 997  ----DFSLLLTLG 1003

[Close]
BLAST of CcUC08G148370 vs. NCBI nr
Match: XP_022145142.1 (uncharacterized protein LOC111014657 [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-06
Identity = 54/169 (31.95%), Postives = 81/169 (47.93%), Query Frame = 0 

Query: 59  QKSSVQTTSYVMMHFNSFIDQHELTDLLLTNGRSTWSDFRFPTTHTSIHRFFCTQSVLIK 118
           + SS       M  FN FID   L D  + NG+ TWS+ R     + I+RF  ++    K
Sbjct: 149 ETSSANPPQTGMNKFNHFIDFAGLIDPFMNNGQYTWSNLRPHIVLSRINRFLYSKGWSDK 208

Query: 119 FKDAMVKRLGRSTSDHYPLMLTLGSQRWGRLHSR-RIARMAQKRIEDQLEALDQEFFSCS 178
           F    +KRL R+ SDHYP++L   +Q+WG    R     +  K  +  +EA+     S  
Sbjct: 209 FSHHHIKRLPRACSDHYPILLEPPNQQWGHCPFRLENLWLQDKHFQQHIEAIWSSGSSDG 268

Query: 179 W--KADIQKLLTIEESIATL------------AKIVERLSSQVNKQHRT 213
           +   A I+KL T+ + I  L            AKI+E++ S ++KQ  T
Sbjct: 269 YLGYALIKKLNTLAQDIKRLRKNFGPNIPREKAKIMEKILS-IDKQEET 316

[Close]
BLAST of CcUC08G148370 vs. NCBI nr
Match: XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-06
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 59  QKSSVQTTSYVMMHFNSFIDQHELTDLLLTNGRSTWSDFRFPTTHTSIHRFFCTQSVLIK 118
           +KS+ +  +  M  FNSFI+   L D+ LTNG+ TWS     T+ + I  F  T   + K
Sbjct: 149 EKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNGQHTWSR---NTSFSLIDCFLLTNGCIDK 208

Query: 119 FKDAMVKRLGRSTSDHYPLMLTLGSQRWG 148
               + KR+ R+TSDH+P++L  G   WG
Sbjct: 209 LGMPIAKRMTRTTSDHFPILLDFGQNNWG 234

[Close]
BLAST of CcUC08G148370 vs. NCBI nr
Match: TYK13810.1 (hypothetical protein E5676_scaffold488G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-06
Identity = 35/94 (37.23%), Postives = 49/94 (52.13%), Query Frame = 0 

Query: 54  VNHLVQKSSVQTTSYVMMHFNSFIDQHELTDLLLTNGRSTWSDFRFPTTHTSIHRFFCTQ 113
           V + V+ S+  +++Y M  FN+FI  + L D  LTN + TWS+ R     + I RF  T 
Sbjct: 74  VRYTVEASAQNSSTYSMRKFNAFITNNNLIDPSLTNAKYTWSNLRVQRVLSRIDRFLYTA 133

Query: 114 SVLIKFKDAMVKRLGRSTSDHYPLMLTLGSQRWG 148
                F     K L R TSDH+PL+L   +  WG
Sbjct: 134 GWENMFSLHYSKALSRITSDHFPLLLESSNISWG 167

[Close]
BLAST of CcUC08G148370 vs. ExPASy TrEMBL
Match: A0A5D3BU88 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00280 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.1e-09
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 70   MMHFNSFIDQHELTDLLLTNGRSTWSDFRFPTTHTSIHRFFCTQSVLIKFKDAMVKRLGR 129
            M  FNSFI+Q +L D  L+NG  TW+DFR P THT I RF  T++++ KF DA V RL  
Sbjct: 1584 MSAFNSFIEQRDLIDSPLSNGSYTWTDFRNPPTHTKIDRFLYTETMINKFSDAFVNRL-- 1643

Query: 130  STSDHYPLMLTLG 143
                 + L+LTLG
Sbjct: 1644 ----DFSLLLTLG 1650

[Close]
BLAST of CcUC08G148370 vs. ExPASy TrEMBL
Match: A0A5A7U8I6 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00460 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.1e-09
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 70   MMHFNSFIDQHELTDLLLTNGRSTWSDFRFPTTHTSIHRFFCTQSVLIKFKDAMVKRLGR 129
            M  FNSFI+Q +L D  L+NG  TW+DFR P THT I RF  T++++ KF DA V RL  
Sbjct: 937  MSAFNSFIEQRDLIDSPLSNGSYTWTDFRNPPTHTKIDRFLYTETMINKFSDAFVNRL-- 996

Query: 130  STSDHYPLMLTLG 143
                 + L+LTLG
Sbjct: 997  ----DFSLLLTLG 1003

[Close]
BLAST of CcUC08G148370 vs. ExPASy TrEMBL
Match: A0A6J1CVN2 (uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014657 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.8e-07
Identity = 54/169 (31.95%), Postives = 81/169 (47.93%), Query Frame = 0 

Query: 59  QKSSVQTTSYVMMHFNSFIDQHELTDLLLTNGRSTWSDFRFPTTHTSIHRFFCTQSVLIK 118
           + SS       M  FN FID   L D  + NG+ TWS+ R     + I+RF  ++    K
Sbjct: 149 ETSSANPPQTGMNKFNHFIDFAGLIDPFMNNGQYTWSNLRPHIVLSRINRFLYSKGWSDK 208

Query: 119 FKDAMVKRLGRSTSDHYPLMLTLGSQRWGRLHSR-RIARMAQKRIEDQLEALDQEFFSCS 178
           F    +KRL R+ SDHYP++L   +Q+WG    R     +  K  +  +EA+     S  
Sbjct: 209 FSHHHIKRLPRACSDHYPILLEPPNQQWGHCPFRLENLWLQDKHFQQHIEAIWSSGSSDG 268

Query: 179 W--KADIQKLLTIEESIATL------------AKIVERLSSQVNKQHRT 213
           +   A I+KL T+ + I  L            AKI+E++ S ++KQ  T
Sbjct: 269 YLGYALIKKLNTLAQDIKRLRKNFGPNIPREKAKIMEKILS-IDKQEET 316

[Close]
BLAST of CcUC08G148370 vs. ExPASy TrEMBL
Match: A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.9e-07
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 59  QKSSVQTTSYVMMHFNSFIDQHELTDLLLTNGRSTWSDFRFPTTHTSIHRFFCTQSVLIK 118
           +KS+ +  +  M  FNSFI+   L D+ LTNG+ TWS     T+ + I  F  T   + K
Sbjct: 149 EKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNGQHTWSR---NTSFSLIDCFLLTNGCIDK 208

Query: 119 FKDAMVKRLGRSTSDHYPLMLTLGSQRWG 148
               + KR+ R+TSDH+P++L  G   WG
Sbjct: 209 LGMPIAKRMTRTTSDHFPILLDFGQNNWG 234

[Close]
BLAST of CcUC08G148370 vs. ExPASy TrEMBL
Match: A0A5D3CQX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00730 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-06
Identity = 35/94 (37.23%), Postives = 49/94 (52.13%), Query Frame = 0 

Query: 54  VNHLVQKSSVQTTSYVMMHFNSFIDQHELTDLLLTNGRSTWSDFRFPTTHTSIHRFFCTQ 113
           V + V+ S+  +++Y M  FN+FI  + L D  LTN + TWS+ R     + I RF  T 
Sbjct: 74  VRYTVEASAQNSSTYSMRKFNAFITNNNLIDPSLTNAKYTWSNLRVQRVLSRIDRFLYTA 133

Query: 114 SVLIKFKDAMVKRLGRSTSDHYPLMLTLGSQRWG 148
                F     K L R TSDH+PL+L   +  WG
Sbjct: 134 GWENMFSLHYSKALSRITSDHFPLLLESSNISWG 167

The following BLAST results are available for this feature:
BLAST of CcUC08G148370 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK01796.11.7e-0850.68Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0052233.11.7e-0850.68Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
XP_022145142.11.2e-0631.95uncharacterized protein LOC111014657 [Momordica charantia][more]
XP_022158956.12.0e-0638.20uncharacterized protein LOC111025405 [Momordica charantia][more]
TYK13810.12.7e-0637.23hypothetical protein E5676_scaffold488G00730 [Cucumis melo var. makuwa][more]
BLAST of CcUC08G148370 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC08G148370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BU888.1e-0950.68Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U8I68.1e-0950.68Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A6J1CVN25.8e-0731.95uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1E2G69.9e-0738.20uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5D3CQX71.3e-0637.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CcUC08G148370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 152..172
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 37..141
e-value: 1.5E-5
score: 26.9
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 58..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G148370.1CcUC08G148370.1mRNA