CcUC08G147420 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G147420
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 3-like
Location	CicolChr08: 6401973 .. 6402707 (-)
RNA-Seq Expression	CcUC08G147420
Synteny	CcUC08G147420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGTGTAGTGGAGCAATGTTTGAGACATATCTTTCATGAATATAGTATTAATCGCAGTGGTAGTGGTAGTGGACCTAGTGGTAGTAGTACTACTACTGATAAACCAATTGTCTCAGACTCCGATACCATAAGAAATGATTGTGATCCAACTGAAAAGCTGGGTGAAAAATTTGAGTATGATACGGTGATTGAAGAGTTGGAATGTGATGATACTACAACTTTTGTTAAGGAGTCAAAGATTGATGTTTATTTGAAGCTAATGTTAAGAATGAAAGTGATTTGGATATATTATAGTGGTGGAAGAAGAATGATTTGAGGTTCTTAGCCGTATTAGCAGAGATAGATTTGAGGTTCTTAGCCGTATTAGCAGAGATATATTAGCCATTCCAGTATCTATTGTAGAATTTGAGTCGATTTTTAGTACAGGAGGACGTATTCATAGCGTTGTTCATTGGCTCCAAAATCAGTGGAGACTCTTATCTGTACTCAAAATTGGCTAAATTCTAATCCAATAGACCTTTGAATTCATCATGAATTGGAAGAAGTTTAATTATTTGAAGAAGGTATGTATTCAATTGTTTAGCCTACCTTATATTTATATTTATATTTTTTAAAATTTTAATGAGGTTGTTTTTCTCTTCTTAATTATATAGGTTTCAGACTGGTTATAGAAAATGAAAAAGACATTGAAGACCTTCAAGTTTTTTCAAAGTTGTCACTTGTCGATTAA

mRNA sequence

ATGGGAAGTGTAGTGGAGCAATGTTTGAGACATATCTTTCATGAATATAGTATTAATCGCAGTGGTAGTGGTAGTGGACCTAGTGGTAGTAGTACTACTACTGATAAACCAATTGTCTCAGACTCCGATACCATAAGAAATGATTGTGATCCAACTGAAAAGCTGGGTGAAAAATTTGAGTATGATACGGTGATTGAAGAGTTGGAATGTTTCAGACTGGTTATAGAAAATGAAAAAGACATTGAAGACCTTCAAGTTTTTTCAAAGTTGTCACTTGTCGATTAA

Coding sequence (CDS)

ATGGGAAGTGTAGTGGAGCAATGTTTGAGACATATCTTTCATGAATATAGTATTAATCGCAGTGGTAGTGGTAGTGGACCTAGTGGTAGTAGTACTACTACTGATAAACCAATTGTCTCAGACTCCGATACCATAAGAAATGATTGTGATCCAACTGAAAAGCTGGGTGAAAAATTTGAGTATGATACGGTGATTGAAGAGTTGGAATGTTTCAGACTGGTTATAGAAAATGAAAAAGACATTGAAGACCTTCAAGTTTTTTCAAAGTTGTCACTTGTCGATTAA

Protein sequence

MGSVVEQCLRHIFHEYSINRSGSGSGPSGSSTTTDKPIVSDSDTIRNDCDPTEKLGEKFEYDTVIEELECFRLVIENEKDIEDLQVFSKLSLVD

Homology

[Close]

BLAST of CcUC08G147420 vs. NCBI nr
Match: XP_038885835.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Benincasa hispida])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 1   MGSVVEQCLRHIFHEYSINRSGSGSGPSGSSTTTDKPIVSDSDTIRNDCDPTEKLGEKFE 60
           M +VVEQC R +FHEYS N+SG     SGS+TT + PIVS S+TI  DCDPTEK+GE F 
Sbjct: 217 MENVVEQCCRRLFHEYS-NQSG-----SGSTTTINTPIVSASETI-IDCDPTEKVGEDFV 273

Query: 61  YDTV 65
           YDT+
Sbjct: 277 YDTI 273

[Close]

BLAST of CcUC08G147420 vs. NCBI nr
Match: KAA0025368.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-08
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1   MGSVVEQCLRHIFHEYSINRSGSGSGPSGSSTTTDKPIVSDSDTIRNDCDPTEKLGEKFE 60
           MG+VVEQC RH+FHEYS  RSGS  G S +STT+ + +      I  D D  E +GE F 
Sbjct: 278 MGNVVEQCCRHLFHEYSTTRSGSRQGCSSTSTTSTQTVSGLDANI--DFDSNENVGEDFV 337

Query: 61  YDTVIEELE 70
           YDT++EE E
Sbjct: 338 YDTIVEEFE 344

[Close]

BLAST of CcUC08G147420 vs. NCBI nr
Match: KAA0048725.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1   MGSVVEQCLRHIFHEYSINRSGSGSGPSGSSTTTDKPIVSDSDTIRNDCDPTEKLGEKFE 60
           MG+VVEQC R +FHEYS  RSGS  G S +STT+ + IVS  D    D D  E +GE F 
Sbjct: 260 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQ-IVSGLDA-NIDFDSNENVGEDFV 319

Query: 61  YDTVIEELE 70
           YDT++EE E
Sbjct: 320 YDTIVEEFE 326

[Close]

BLAST of CcUC08G147420 vs. NCBI nr
Match: TYK11249.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1  MGSVVEQCLRHIFHEYSINRSGSGSGPSGSSTTTDKPIVSDSDTIRNDCDPTEKLGEKFE 60
          MG+VVEQC RH+FHEYSI +SGS  G S +STT  + +      I  D D  + +GE F 
Sbjct: 1  MGNVVEQCCRHLFHEYSITQSGSRQGCSSTSTTCTQTVSCLDANI--DFDSNKNVGEDFV 60

Query: 61 YDTVIEELE 70
          YDT++EE E
Sbjct: 61 YDTIVEEFE 67

[Close]

BLAST of CcUC08G147420 vs. NCBI nr
Match: KAA0047654.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MGSVVEQCLRHIFHEYSINRSGSGSGPSGSSTTTDKPIVSDSDTIRNDCDPTEKLGEKFE 60
           MG+VVEQC R +FHEYS  RSGS  G S +STT+ + +      I  D D  E +GE F 
Sbjct: 409 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTVSGFDANI--DFDSNENVGEDFV 468

Query: 61  YDTVIEELE 70
           YDT++EE E
Sbjct: 469 YDTIVEEFE 475

[Close]

BLAST of CcUC08G147420 vs. ExPASy TrEMBL
Match: A0A5A7SGU9 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00520 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1   MGSVVEQCLRHIFHEYSINRSGSGSGPSGSSTTTDKPIVSDSDTIRNDCDPTEKLGEKFE 60
           MG+VVEQC RH+FHEYS  RSGS  G S +STT+ + +      I  D D  E +GE F 
Sbjct: 278 MGNVVEQCCRHLFHEYSTTRSGSRQGCSSTSTTSTQTVSGLDANI--DFDSNENVGEDFV 337

Query: 61  YDTVIEELE 70
           YDT++EE E
Sbjct: 338 YDTIVEEFE 344

[Close]

BLAST of CcUC08G147420 vs. ExPASy TrEMBL
Match: A0A5A7U523 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43G00190 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.2e-08
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1   MGSVVEQCLRHIFHEYSINRSGSGSGPSGSSTTTDKPIVSDSDTIRNDCDPTEKLGEKFE 60
           MG+VVEQC R +FHEYS  RSGS  G S +STT+ + IVS  D    D D  E +GE F 
Sbjct: 260 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQ-IVSGLDA-NIDFDSNENVGEDFV 319

Query: 61  YDTVIEELE 70
           YDT++EE E
Sbjct: 320 YDTIVEEFE 326

[Close]

BLAST of CcUC08G147420 vs. ExPASy TrEMBL
Match: A0A5D3CM18 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001050 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.1e-08
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1  MGSVVEQCLRHIFHEYSINRSGSGSGPSGSSTTTDKPIVSDSDTIRNDCDPTEKLGEKFE 60
          MG+VVEQC RH+FHEYSI +SGS  G S +STT  + +      I  D D  + +GE F 
Sbjct: 1  MGNVVEQCCRHLFHEYSITQSGSRQGCSSTSTTCTQTVSCLDANI--DFDSNKNVGEDFV 60

Query: 61 YDTVIEELE 70
          YDT++EE E
Sbjct: 61 YDTIVEEFE 67

[Close]

BLAST of CcUC08G147420 vs. ExPASy TrEMBL
Match: A0A5A7TXF5 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G001450 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MGSVVEQCLRHIFHEYSINRSGSGSGPSGSSTTTDKPIVSDSDTIRNDCDPTEKLGEKFE 60
           MG+VVEQC R +FHEYS  RSGS  G S +STT+ + +      I  D D  E +GE F 
Sbjct: 409 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTVSGFDANI--DFDSNENVGEDFV 468

Query: 61  YDTVIEELE 70
           YDT++EE E
Sbjct: 469 YDTIVEEFE 475

[Close]

BLAST of CcUC08G147420 vs. ExPASy TrEMBL
Match: A0A5D3CXI1 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004160 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MGSVVEQCLRHIFHEYSINRSGSGSGPSGSSTTTDKPIVSDSDTIRNDCDPTEKLGEKFE 60
           MG+VVEQC R +FHEYS  RSGS  G S +STT+ + +      I  D D  E +GE F 
Sbjct: 410 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTVSGLDANI--DFDSNENVGEDFV 469

Query: 61  YDTVIEELE 70
           YDT++EE E
Sbjct: 470 YDTIVEEFE 476

The following BLAST results are available for this feature:

BLAST of CcUC08G147420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885835.1	1.2e-08	62.50	zinc finger BED domain-containing protein RICESLEEPER 2-like [Benincasa hispida]	[more]
KAA0025368.1	3.4e-08	52.17	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0048725.1	1.3e-07	55.07	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
TYK11249.1	1.7e-07	50.72	transposase [Cucumis melo var. makuwa]	[more]
KAA0047654.1	2.2e-07	50.72	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]

BLAST of CcUC08G147420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC08G147420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SGU9	1.6e-08	52.17	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7U523	6.2e-08	55.07	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5D3CM18	8.1e-08	50.72	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001050 P...	[more]
A0A5A7TXF5	1.1e-07	50.72	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5D3CXI1	1.4e-07	50.72	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]

BLAST of CcUC08G147420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G147420.1	CcUC08G147420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding