CcUC08G146940 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G146940
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 4543564 .. 4544156 (-)
RNA-Seq ExpressionCcUC08G146940
SyntenyCcUC08G146940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGCGAGAGAAAACACATATCATTATTCCTCAAGTGTACACTGCTGCCAATTGTGAGTTTTCTGCTTCGTTGGTCGTCATTTGTGGTAGCAGCTGGCCGTGCAGCTGTTCGTCCGCCGCTAGTCGTCTGCCCTTCTTCCGTCAGATTGTGCCGCTGCCGTCGTGTCTCTACAGCAGTTCGTCAGATTGTGCCTTTACAGTTTGTTGTAACAGGTTCTGTAGTTTCGATCCTCCTCCAGCCCAAATATTTGGCTTACGGGTGCTTGAACTGAAGGAACAGGGTGTCAGTGAGGAGCAAGCCATGGCAGTAGCCAATGTATGGATTGCTTACTATTCTTTTATTCATATACTTCTCTTGAATCTCTTCGGCCAATAATGTCTTTTGTCATCCAAATGAATACCGGGCAGAGAAAAAGGCGAAAAAGAAGGCTTACTCTCGCTTGAAGCAAATTGCACGTCTTCAAGGGAAGAAACCTCCTCCTAACTCTTATCCAAGTGCTGTTAAGGAGATATAAGCTGAGGAAAGACAATTCGTCCACGATCGTTTCTTCGACCCCAAATGAATACCGGGCAGTTGAAATGAAGGAAAGAATG

mRNA sequence

AGGCGAGAGAAAACACATATCATTATTCCTCAAGTGTACACTGCTGCCAATTGTGAGTTTTCTGCTTCGTTGGTCGTCATTTGTGGTAGCAGCTGGCCGTGCAGCTGTTCGTCCGCCGCTAGTCGTCTGCCCTTCTTCCGTCAGATTGTGCCGCTGCCGTCGTGTCTCTACAGCAGTTCGTCAGATTGTGCCTTTACAGTTTGTTGTAACAGGTTCTGTAGTTTCGATCCTCCTCCAGCCCAAATATTTGGCTTACGGGTGCTTGAACTGAAGGAACAGGGTGTCAGTGAGGAGCAAGCCATGGCAGTAGCCAATGGAAGAAACCTCCTCCTAACTCTTATCCAAGTGCTGTTAAGGAGATATAAGCTGAGGAAAGACAATTCGTCCACGATCGTTTCTTCGACCCCAAATGAATACCGGGCAGTTGAAATGAAGGAAAGAATG

Coding sequence (CDS)

AGGCGAGAGAAAACACATATCATTATTCCTCAAGTGTACACTGCTGCCAATTGTGAGTTTTCTGCTTCGTTGGTCGTCATTTGTGGTAGCAGCTGGCCGTGCAGCTGTTCGTCCGCCGCTAGTCGTCTGCCCTTCTTCCGTCAGATTGTGCCGCTGCCGTCGTGTCTCTACAGCAGTTCGTCAGATTGTGCCTTTACAGTTTGTTGTAACAGGTTCTGTAGTTTCGATCCTCCTCCAGCCCAAATATTTGGCTTACGGGTGCTTGAACTGAAGGAACAGGGTGTCAGTGAGGAGCAAGCCATGGCAGTAGCCAATGGAAGAAACCTCCTCCTAACTCTTATCCAAGTGCTGTTAAGGAGATATAAGCTGAGGAAAGACAATTCGTCCACGATCGTTTCTTCGACCCCAAATGAATACCGGGCAGTTGAAATGAAGGAAAGAATG

Protein sequence

RREKTHIIIPQVYTAANCEFSASLVVICGSSWPCSCSSAASRLPFFRQIVPLPSCLYSSSSDCAFTVCCNRFCSFDPPPAQIFGLRVLELKEQGVSEEQAMAVANGRNLLLTLIQVLLRRYKLRKDNSSTIVSSTPNEYRAVEMKERM
Homology
BLAST of CcUC08G146940 vs. NCBI nr
Match: XP_022996766.1 (uncharacterized protein LOC111491881 [Cucurbita maxima] >XP_022996833.1 uncharacterized protein LOC111491881 [Cucurbita maxima] >XP_022996916.1 uncharacterized protein LOC111491881 [Cucurbita maxima] >XP_022996999.1 uncharacterized protein LOC111491881 [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 71  RFCSFDPPPAQIFGLRVLELKEQGVSEEQAMAVAN 106
           +FCSFDPPPA+IFGLRVLELKEQGVSEE+AMAVAN
Sbjct: 73  KFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVAN 107

BLAST of CcUC08G146940 vs. NCBI nr
Match: XP_022957544.1 (uncharacterized protein LOC111458914 [Cucurbita moschata] >XP_022957545.1 uncharacterized protein LOC111458914 [Cucurbita moschata] >XP_022957546.1 uncharacterized protein LOC111458914 [Cucurbita moschata] >XP_022957547.1 uncharacterized protein LOC111458914 [Cucurbita moschata] >XP_023513675.1 uncharacterized protein LOC111778212 [Cucurbita pepo subsp. pepo] >XP_023513683.1 uncharacterized protein LOC111778212 [Cucurbita pepo subsp. pepo] >XP_023513691.1 uncharacterized protein LOC111778212 [Cucurbita pepo subsp. pepo] >XP_023513699.1 uncharacterized protein LOC111778212 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 71  RFCSFDPPPAQIFGLRVLELKEQGVSEEQAMAVAN 106
           +FCSFDPPPA+IFGLRVLELKEQGVSEE+AMAVAN
Sbjct: 73  KFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVAN 107

BLAST of CcUC08G146940 vs. NCBI nr
Match: KAG7032230.1 (hypothetical protein SDJN02_06273 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 71  RFCSFDPPPAQIFGLRVLELKEQGVSEEQAMAVAN 106
           +FCSFDPPPA+IFGLRVLELKEQGVSEE+AMAVAN
Sbjct: 73  KFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVAN 107

BLAST of CcUC08G146940 vs. NCBI nr
Match: KAG6601448.1 (Galactoside 2-alpha-L-fucosyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 71  RFCSFDPPPAQIFGLRVLELKEQGVSEEQAMAVAN 106
           +FCSFDPPPA+IFGLRVLELKEQGVSEE+AMAVAN
Sbjct: 660 KFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVAN 694

BLAST of CcUC08G146940 vs. NCBI nr
Match: XP_022151151.1 (uncharacterized protein LOC111019147 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 4.1e-08
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 71  RFCSFDPPPAQIFGLRVLELKEQGVSEEQAMAVAN 106
           +FCSFDPPPA+IFGLRVLELKEQGV EE+AMAVAN
Sbjct: 73  KFCSFDPPPARIFGLRVLELKEQGVGEEEAMAVAN 107

BLAST of CcUC08G146940 vs. ExPASy TrEMBL
Match: A0A6J1KC52 (uncharacterized protein LOC111491881 OS=Cucurbita maxima OX=3661 GN=LOC111491881 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.8e-09
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 71  RFCSFDPPPAQIFGLRVLELKEQGVSEEQAMAVAN 106
           +FCSFDPPPA+IFGLRVLELKEQGVSEE+AMAVAN
Sbjct: 73  KFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVAN 107

BLAST of CcUC08G146940 vs. ExPASy TrEMBL
Match: A0A6J1GZF0 (uncharacterized protein LOC111458914 OS=Cucurbita moschata OX=3662 GN=LOC111458914 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.8e-09
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 71  RFCSFDPPPAQIFGLRVLELKEQGVSEEQAMAVAN 106
           +FCSFDPPPA+IFGLRVLELKEQGVSEE+AMAVAN
Sbjct: 73  KFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVAN 107

BLAST of CcUC08G146940 vs. ExPASy TrEMBL
Match: A0A6J1DDQ7 (uncharacterized protein LOC111019147 OS=Momordica charantia OX=3673 GN=LOC111019147 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-08
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 71  RFCSFDPPPAQIFGLRVLELKEQGVSEEQAMAVAN 106
           +FCSFDPPPA+IFGLRVLELKEQGV EE+AMAVAN
Sbjct: 73  KFCSFDPPPARIFGLRVLELKEQGVGEEEAMAVAN 107

BLAST of CcUC08G146940 vs. ExPASy TrEMBL
Match: A0A7N2LBH9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-07
Identity = 28/35 (80.00%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 71  RFCSFDPPPAQIFGLRVLELKEQGVSEEQAMAVAN 106
           + CSFDPPPA++FGLRVL+LKEQGVSEE+AMAVA+
Sbjct: 73  KICSFDPPPARLFGLRVLDLKEQGVSEEEAMAVAD 107

BLAST of CcUC08G146940 vs. ExPASy TrEMBL
Match: A0A7N2R7A3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.3e-07
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 71  RFCSFDPPPAQIFGLRVLELKEQGVSEEQAMAVAN 106
           + C FDPPPA+IFGLRVL+LKEQGVSEE+AMAVA+
Sbjct: 44  KICGFDPPPARIFGLRVLDLKEQGVSEEEAMAVAD 78

BLAST of CcUC08G146940 vs. TAIR 10
Match: AT1G26750.1 (unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 2.2e-04
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 0

Query: 71  RFCSFDPPPAQIFGLRVLELKEQGVSEEQAMAVAN 106
           +  +F P  A+++G RVLELKE G+SE  AM+VAN
Sbjct: 73  KISAFIPDQARVYGCRVLELKEHGISEGDAMSVAN 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022996766.11.4e-0891.43uncharacterized protein LOC111491881 [Cucurbita maxima] >XP_022996833.1 uncharac... [more]
XP_022957544.11.4e-0891.43uncharacterized protein LOC111458914 [Cucurbita moschata] >XP_022957545.1 unchar... [more]
KAG7032230.11.4e-0891.43hypothetical protein SDJN02_06273 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6601448.11.4e-0891.43Galactoside 2-alpha-L-fucosyltransferase, partial [Cucurbita argyrosperma subsp.... [more]
XP_022151151.14.1e-0888.57uncharacterized protein LOC111019147 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KC526.8e-0991.43uncharacterized protein LOC111491881 OS=Cucurbita maxima OX=3661 GN=LOC111491881... [more]
A0A6J1GZF06.8e-0991.43uncharacterized protein LOC111458914 OS=Cucurbita moschata OX=3662 GN=LOC1114589... [more]
A0A6J1DDQ72.0e-0888.57uncharacterized protein LOC111019147 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A7N2LBH94.9e-0780.00Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A7N2R7A38.3e-0780.00Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G26750.12.2e-0454.29unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G146940.1CcUC08G146940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane