CcUC08G146320 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G146320
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	succinate dehydrogenase assembly factor 1, mitochondrial
Location	CicolChr08: 2503877 .. 2504446 (+)
RNA-Seq Expression	CcUC08G146320
Synteny	CcUC08G146320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGATAGGGAGCAGTATACAATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTTCTCAGTCTATACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCCCTGAAGATCGACGCCAAATCGAATCGATTGTCACCGCCGAGTTCCGCCGAAACGCCAAGCAAATAGATCGTAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGCGCTGCCACTGTTCGATTGTCTTCGCTCAATCTCAATTCTGAGCCTTGAAACTGTATGTACATTTCTTCCATTCTTGCCTGTTGCTCTTCTCGGTTCTGTTTTGATCCATTTTGAACCCTAGAAAATAAACTGCGATTTATTTGCTTTCTTTCCTCTTGAATTTTGAGTCACTCTTTTGATTTGATTTGTTTGTCCTGCATGATTTTGCTTTTGCATTGCAGATCAGTAGGAGTGGATAGCAGAATCCTTCAAAAGCTTGAACATAAGGATAATGGATTTTGTTCGTTTGTAAACTTAAGGTATGAATCTAGTGGAGTGGCATGTTTATGA

mRNA sequence

ATGGTAGATAGGGAGCAGTATACAATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTTCTCAGTCTATACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCCCTGAAGATCGACGCCAAATCGAATCGATTGTCACCGCCGAGTTCCGCCGAAACGCCAAGCAAATAGATCGTAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGCGCTGCCACTGTTCGATTGTCATCAGTAGGAGTGGATAGCAGAATCCTTCAAAAGCTTGAACATAAGGATAATGGATTTTGTTCGTTTGTAAACTTAAGGTATGAATCTAGTGGAGTGGCATGTTTATGA

Coding sequence (CDS)

ATGGTAGATAGGGAGCAGTATACAATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTTCTCAGTCTATACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCCCTGAAGATCGACGCCAAATCGAATCGATTGTCACCGCCGAGTTCCGCCGAAACGCCAAGCAAATAGATCGTAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGCGCTGCCACTGTTCGATTGTCATCAGTAGGAGTGGATAGCAGAATCCTTCAAAAGCTTGAACATAAGGATAATGGATTTTGTTCGTTTGTAAACTTAAGGTATGAATCTAGTGGAGTGGCATGTTTATGA

Protein sequence

MVDREQYTMAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSAATVRLSSVGVDSRILQKLEHKDNGFCSFVNLRYESSGVACL

Homology

[Close]

BLAST of CcUC08G146320 vs. NCBI nr
Match: XP_038890134.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida])

HSP 1 Score: 139.8 bits (351), Expect = 1.5e-29
Identity = 75/85 (88.24%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLL 68
          MAKLSGLQKQVLSLYRAFLRAARSKS EDRRQIESIV AEFRRNAKQIDRKNFIHIEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 60

Query: 69 RRGNKQLDQLKSAATVRLSSVGVDS 94
          RRGNKQLDQLKS  TVR S++   S
Sbjct: 61 RRGNKQLDQLKSPGTVRFSTINPHS 85

[Close]

BLAST of CcUC08G146320 vs. NCBI nr
Match: XP_008459591.1 (PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 3.8e-28
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLL 68
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIV AEFRRNAKQIDRKNFI+IEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL 60

Query: 69 RRGNKQLDQLKSAATVRLSSV 90
          RRGNKQLDQLKS ATVRLS++
Sbjct: 61 RRGNKQLDQLKSPATVRLSTL 81

[Close]

BLAST of CcUC08G146320 vs. NCBI nr
Match: XP_011656085.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis sativus] >KGN52665.1 hypothetical protein Csa_008140 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLL 68
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIV  EFRRNAKQIDRKNFI+IEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLL 60

Query: 69 RRGNKQLDQLKSAATVRLSSV 90
          RRGNKQLDQLKS ATVRLS++
Sbjct: 61 RRGNKQLDQLKSPATVRLSTL 81

[Close]

BLAST of CcUC08G146320 vs. NCBI nr
Match: XP_023525064.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023525065.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 5.5e-27
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 11  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLLRR 70
           KLSG+Q+QVLSLYRAFLRAARSKS EDRRQIES+V+AEFRRNAK IDRKNFI+IEYLLRR
Sbjct: 34  KLSGMQRQVLSLYRAFLRAARSKSAEDRRQIESVVSAEFRRNAKLIDRKNFIYIEYLLRR 93

Query: 71  GNKQLDQLKSAATVRLSSVGVDSRILQKLE 101
           GNKQLDQL+S ATV LSS+ ++S   Q  E
Sbjct: 94  GNKQLDQLRSPATVGLSSLTLNSSPTQDSE 123

[Close]

BLAST of CcUC08G146320 vs. NCBI nr
Match: XP_022141880.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Momordica charantia])

HSP 1 Score: 131.0 bits (328), Expect = 7.2e-27
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 11 KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLLRR 70
          KLSGLQKQVLSLYR FLRAARSKS EDRRQ+ES+V AEFRRNA QID KNFI+IEYLLRR
Sbjct: 6  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRR 65

Query: 71 GNKQLDQLKSAATVRLSSVGVDS 94
          GNKQLDQLKS ATVRLSS+ V +
Sbjct: 66 GNKQLDQLKSPATVRLSSMNVSN 88

[Close]

BLAST of CcUC08G146320 vs. ExPASy Swiss-Prot
Match: B0K036 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Sdhaf1 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-07
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLL 68
          M++LS LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL 
Sbjct: 1  MSRLSRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHA-SLPRSDVLRIEYLY 60

Query: 69 RRGNKQLDQLKS 81
          RRG +QL  L+S
Sbjct: 61 RRGRRQLQLLRS 66

[Close]

BLAST of CcUC08G146320 vs. ExPASy Swiss-Prot
Match: A8PU71 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Bos taurus OX=9913 GN=SDHAF1 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-06
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLL 68
          M++ S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL 
Sbjct: 1  MSRHSRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHA-CLPRSDVLRIEYLY 60

Query: 69 RRGNKQLDQLKS 81
          RRG +QL  L+S
Sbjct: 61 RRGRRQLQMLRS 66

[Close]

BLAST of CcUC08G146320 vs. ExPASy Swiss-Prot
Match: A6NFY7 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Homo sapiens OX=9606 GN=SDHAF1 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLL 68
          M++ S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL 
Sbjct: 1  MSRHSRLQRQVLSLYRDLLRAGRGKPGAEAR-----VRAEFRQHA-GLPRSDVLRIEYLY 60

Query: 69 RRGNKQLDQLKS 81
          RRG +QL  L+S
Sbjct: 61 RRGRRQLQLLRS 66

[Close]

BLAST of CcUC08G146320 vs. ExPASy Swiss-Prot
Match: Q3U276 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Mus musculus OX=10090 GN=Sdhaf1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.5e-06
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLL 68
          M++ S LQ+QVLSLYR  LRA R     + R     V AEFR++A  + R + + IEYL 
Sbjct: 1  MSRPSRLQRQVLSLYRELLRAGRGTPGAEAR-----VRAEFRQHA-SLPRTDVLRIEYLY 60

Query: 69 RRGNKQLDQLKS 81
          RRG +QL  L+S
Sbjct: 61 RRGRRQLQLLRS 66

[Close]

BLAST of CcUC08G146320 vs. ExPASy Swiss-Prot
Match: A6ZYX9 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=SCY_1267 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-05
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 11 KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLLRR 70
          +LSGLQK+VL LYRA +R A +K  E++    + +  EF +  + + RK+F  IE+LLR 
Sbjct: 4  RLSGLQKEVLHLYRASIRTAHTKPKENQVNFVNYIHEEFGK-YRNLPRKDFTTIEHLLRV 63

Query: 71 GNKQL 76
          GNK++
Sbjct: 64 GNKKI 67

[Close]

BLAST of CcUC08G146320 vs. ExPASy TrEMBL
Match: A0A1S3CAJ2 (succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103498675 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.8e-28
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLL 68
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIV AEFRRNAKQIDRKNFI+IEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL 60

Query: 69 RRGNKQLDQLKSAATVRLSSV 90
          RRGNKQLDQLKS ATVRLS++
Sbjct: 61 RRGNKQLDQLKSPATVRLSTL 81

[Close]

BLAST of CcUC08G146320 vs. ExPASy TrEMBL
Match: A0A0A0KST3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649345 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.4e-28
Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLL 68
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIV  EFRRNAKQIDRKNFI+IEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLL 60

Query: 69 RRGNKQLDQLKSAATVRLSSV 90
          RRGNKQLDQLKS ATVRLS++
Sbjct: 61 RRGNKQLDQLKSPATVRLSTL 81

[Close]

BLAST of CcUC08G146320 vs. ExPASy TrEMBL
Match: A0A6J1CJC1 (succinate dehydrogenase assembly factor 1, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012137 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.5e-27
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 11 KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLLRR 70
          KLSGLQKQVLSLYR FLRAARSKS EDRRQ+ES+V AEFRRNA QID KNFI+IEYLLRR
Sbjct: 6  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRR 65

Query: 71 GNKQLDQLKSAATVRLSSVGVDS 94
          GNKQLDQLKS ATVRLSS+ V +
Sbjct: 66 GNKQLDQLKSPATVRLSSMNVSN 88

[Close]

BLAST of CcUC08G146320 vs. ExPASy TrEMBL
Match: A0A6J1EX50 (LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111438897 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.9e-26
Identity = 68/91 (74.73%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 11  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLLRR 70
           KLSG+QKQVLSLY AFLRAARSKS EDR++IES+V+AEFRRNAK IDRK+FI+IEYLLRR
Sbjct: 26  KLSGMQKQVLSLYXAFLRAARSKSAEDRKRIESVVSAEFRRNAKLIDRKDFIYIEYLLRR 85

Query: 71  GNKQLDQLKSAATVRLSSVGVDSRILQKLEH 102
           GNKQLDQL+S ATV LS++ ++S   Q  EH
Sbjct: 86  GNKQLDQLRSPATVGLSTLTLNSSPTQDSEH 116

[Close]

BLAST of CcUC08G146320 vs. ExPASy TrEMBL
Match: A0A1U8IIR1 (succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Gossypium hirsutum OX=3635 GN=LOC107895066 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.0e-26
Identity = 66/83 (79.52%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 11 KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLLRR 70
          KLSG+Q+QVLSLYR FLRAARSK  EDRRQIESIV+AEFRRN+KQ+DRKNF+HIEYLLRR
Sbjct: 8  KLSGMQRQVLSLYRGFLRAARSKPTEDRRQIESIVSAEFRRNSKQVDRKNFLHIEYLLRR 67

Query: 71 GNKQLDQLKSAATVRLSSVGVDS 94
          G KQLDQLKS  T+ LSS  V S
Sbjct: 68 GKKQLDQLKSPDTIGLSSCNVSS 90

[Close]

BLAST of CcUC08G146320 vs. TAIR 10
Match: AT2G39725.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 110.5 bits (275), Expect = 9.4e-25
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 10 AKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLLR 69
          +KLSG+QKQVLSLYR FLRAARS+  EDR++IE IV+ EFR N+K++DRKNF +IEYLLR
Sbjct: 4  SKLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQYIEYLLR 63

Query: 70 RGNKQLDQLKSAATVRLSSVGV 92
           G KQLDQLKS A V LSS+ V
Sbjct: 64 LGTKQLDQLKSPAIVSLSSIKV 85

[Close]

BLAST of CcUC08G146320 vs. TAIR 10
Match: AT2G39725.2 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 110.5 bits (275), Expect = 9.4e-25
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 10 AKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVTAEFRRNAKQIDRKNFIHIEYLLR 69
          +KLSG+QKQVLSLYR FLRAARS+  EDR++IE IV+ EFR N+K++DRKNF +IEYLLR
Sbjct: 4  SKLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQYIEYLLR 63

Query: 70 RGNKQLDQLKSAATVRLSSVGV 92
           G KQLDQLKS A V LSS+ V
Sbjct: 64 LGTKQLDQLKSPAIVSLSSIKV 85

The following BLAST results are available for this feature:

BLAST of CcUC08G146320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890134.1	1.5e-29	88.24	succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida]	[more]
XP_008459591.1	3.8e-28	88.89	PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis mel...	[more]
XP_011656085.1	1.1e-27	87.65	succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis sativus] >KGN5...	[more]
XP_023525064.1	5.5e-27	78.89	succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. ...	[more]
XP_022141880.1	7.2e-27	84.34	succinate dehydrogenase assembly factor 1, mitochondrial [Momordica charantia]	[more]

BLAST of CcUC08G146320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B0K036	2.3e-07	50.00	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus OX...	[more]
A8PU71	1.9e-06	48.61	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Bos taurus OX=9913 G...	[more]
A6NFY7	3.3e-06	48.61	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Homo sapiens OX=9606...	[more]
Q3U276	9.5e-06	47.22	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Mus musculus OX=1009...	[more]
A6ZYX9	1.6e-05	44.62	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevi...	[more]

BLAST of CcUC08G146320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAJ2	1.8e-28	88.89	succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucumis melo OX=3656...	[more]
A0A0A0KST3	5.4e-28	87.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649345 PE=4 SV=1	[more]
A0A6J1CJC1	3.5e-27	84.34	succinate dehydrogenase assembly factor 1, mitochondrial OS=Momordica charantia ...	[more]
A0A6J1EX50	3.9e-26	74.73	LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial OS...	[more]
A0A1U8IIR1	5.0e-26	79.52	succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Gossypium hirsu...	[more]

BLAST of CcUC08G146320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39725.1	9.4e-25	70.73	LYR family of Fe/S cluster biogenesis protein	[more]
AT2G39725.2	9.4e-25	70.73	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 17..77 e-value: 2.7E-14 score: 53.0
None	No IPR available	PANTHER	PTHR13675	LYR MOTIF-CONTAINING PROTEIN 2	coord: 10..89
None	No IPR available	PANTHER	PTHR13675:SF1	SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 1, MITOCHONDRIAL	coord: 10..89
None	No IPR available	CDD	cd20268	Complex1_LYR_SDHAF1_LYRM8	coord: 13..77 e-value: 1.46895E-26 score: 91.889

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G146320.1	CcUC08G146320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034553	mitochondrial respiratory chain complex II assembly
cellular_component	GO:0005739	mitochondrion