CcUC08G146180 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G146180
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Cytochrome c oxidase subunit 1
Location	CicolChr08: 2098256 .. 2100961 (+)
RNA-Seq Expression	CcUC08G146180
Synteny	CcUC08G146180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTAAGGGTGGAAGGCAACTTAAAGAAGAGTTATATCTTTGGAGGCATGAGCGAAACCACACTCTATTTTTTGGATGACTAGGAAACTAGTTCTCACCCAAAAAGGTGCAATTGGTTGCGATAAACTTACAATAAATATTATCAATATTAGATGCCAAATCAGCATTAAAATATGTAGTAACATGCAAATCATCACTAGATTGAATGAGCATCCCAAAATGCTTTGTCCCACTTACGTACCAAAGAACTCATGCCAGTAAGTATCTATAGGAAGACGAAGGAATTGACTAAGGTGATTCACTATATAAGCAATGTCAAGTCTTGTATTTTGTTTAATATTGTAGGGTTCCAATCATACTTATATGTAAACAAACGAATCTATTCAATATAGCTGATAATCCTCTCCCAATCTTCAGCCTTGGCCATAATTATTTTCCTCCCTTCAACTATCAAAACCTTTCTTAAATGACAAAACTAGGGAAATTATTTTAAATGACAAAACTATTTTAAATGACAAAACTACTAAAAATATTTACAAATAATAGCAAAATATCACTGTCTATCTGCAATAGACCGCGATAGACTACTACTATCCACAGATAGTATATCCACCCTTAAGTGGTATAAACAACCATTCTGCAGGAGCACTTGATTCAGCAATTTCTTGTCTTCATCCATATGGTATTTCATTCATTTTAAGTTCTATCAATTTTATAACGACTATTTCCAACACCCTCTTTGTGTGGTTCGTTCTAGTGACAGCATTCTCACTTTTATTATCATTTCTGGTACTGGCAGGGACTATTACCATGTTATTAACCGATTGAAACTTTAATACAACCTTTTTCTGACCCCCATGGAGGGGGAGACCCCATATTATAACAGCATCTCTTTCTATTCTTCAATCATCTAGAGATGTATATTCTCATTCTGCTTGGATCTGGTATCATAAGTCATATCGTTTTGACTTTTTTGGGAAAATTGGTTTTTAGGTATCTAGGCATGGTTTATGCCATGATTAGTATAGGTGTTCTTAGATTTCTTGTTTGGGCTCATCATGTATTTACTGTGGGCTTTGATGTTGATGCCCGTGCCTACTTCACCGTTGCTACCATGATCATAGCAACCCCCACTAGAATAAAAATCTTTAGTTGGATTGCTACTATGGTGGGCGGGTTTGATATGATACAAAACACCCATGGTATCTGCTGTAGGGTCCATCTTTTTGTTCACCATAGGAGGACTCATTGGAATAGTCTCAGCAAATTCAGAGCTAGACATTACTCTACATGATACTTATGTGGTTGCATATTTCCATTATGTACTTTCTATGGAAGCCATTTTTGCTTTATTTGCAGGATTTCGCTATTGGGTGGGTAAAATCTTGGGTCGGACATACCCTGAAACTTTAGGTCAAATCCATTTTTGGAATCACTTTTTTTTTGGGTTAATTCAACCTCCTTCCCATGCATTTCTTTGGGCTTTCGGGTATGCCACATCACATTCCTGATTATCCAGATGCTTATGCTGGATGAAATACCCTTAGCAGTTTTTGCTCTTATATATCCATAGTTGGGATTCGTCGTTTCTTCGTGGTCATAACAATCACTCCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAATCCTTAAGCCATTGAATAGAATTCACCCACACTGAAATAGATGGTACAAAGTCCTCCAACTTTTCATACTTTTGAAGAACTTCCAGCTATCAAGTGTGTGAAAAGCTATATGAAGTAAAAGAATAAAGAGTCGTCGACTGCTACTAAGAACTTGACAGAACTGTTCAAAATGTAGGTTCTAAAACCACCTGTGTAGGTCAGGGTTGAAAATTGAGGGGTTAACAAAGTTAGGTCTATCACAGTTTATTACAATTATATAATAAAATTTTGCTATATTTATAGTTCATTTTTCTATATTTGAAAACACCACACCACACATGTGCTAAATTAAGAATCAAAACAGCATATACAAATAAAAATCTAAACCTTTTATTTCCATAATGTAATTCTTCTAGATTCCTTCATGAAACTTACTTTTCAATTAATGCTATCTTTGGTCTGAGACAAATACATTAGAGGAATTACAAATACAGAACCACAGTTGTTAGGGCTTGAATTTTTTTAAAAAAGGAATCACAAGCCAAACATAACACCCCTATGATTATAACCCAACTCAAAATGGTCACCCAAAATTACAACACAATGCATCTACATATCTACAGAAACCAAAGAGCTTGACTTTCAATCAACCCTTGAAGTTGATGTTTAGGGTACACTTCAAAAATGAGATACTGTCCTATAAGAACGTGACAGTCCATAAGCAATGTAATATATATGGGGAAACACCAACGGCACAGCAGGTAAACCCTCCAACAAATGCAAGCTCTATTTAAGAGGAATGTGGGACTACTGTAAAGAGAGAAACTGTGTTATTGTTTCTTGGTTTGCTCAACAGGAAAGTTTTCTTCCGCTTGCCGTTTCCAGAAGTAGTTTGATGCCTCTATCCACCGTGGATGGACCAGAAACTTCTCCTCTTTCAAAGCCCAACGTGACTTCTCCGTTCCAGCATCTGTTGAGACCATGTGTGTCACGGATCGGTCGAGTTCAGTTGAGCAAGTGCCCCCCAACTGCTCTACCATCTTCCAGAGATGATGGTTGTCAGCCTGAAATTTGGTAG

mRNA sequence

ATGAAATGCCAAATCAGCATTAAAATATGTAGTAACATGCAAATCATCACTAGATTGAATGAGCATCCCAAAATGCTTTGTCCCACTTACGTACCAAAGAACTCATGCCAGTATCTAGGCATGGTTTATGCCATGATTAGTATAGGTGTTCTTAGATTTCTTGTTTGGGCTCATCATGTATTTACTGTGGGCTTTGATGTTGATGCCCGTGCCTACTTCACCGTTGCTACCATGATCATAGCAACCCCCACTAGAATAAAAATCTTTAGTTGGATTGCTACTATGGTGGGCGGGTTTGATATGATACAAAACACCCATGGATTTCGCTATTGGGTGGGTAAAATCTTGGGTCGGACATACCCTGAAACTTTAGGTCAAATCCATTTTTGGAATCACTTTTTTTTTGGGTTAATTCAACCTCCTTCCCATGCATTTCTTTGGGCTTTCGGGGTACACTTCAAAAATGAGATACTGTCCTATAAGAACGTGACAGTCCATAAGCAATGTAATATATATGGGGAAACACCAACGGCACAGCAGGAAAGTTTTCTTCCGCTTGCCGTTTCCAGAAGTAGTTTGATGCCTCTATCCACCGTGGATGGACCAGAAACTTCTCCTCTTTCAAAGCCCAACGTGACTTCTCCGTTCCAGCATCTGTTGAGACCATGTGTGTCACGGATCGGTCGAGTTCAGTTGAGCAAGTGCCCCCCAACTGCTCTACCATCTTCCAGAGATGATGGTTGTCAGCCTGAAATTTGGTAG

Coding sequence (CDS)

ATGAAATGCCAAATCAGCATTAAAATATGTAGTAACATGCAAATCATCACTAGATTGAATGAGCATCCCAAAATGCTTTGTCCCACTTACGTACCAAAGAACTCATGCCAGTATCTAGGCATGGTTTATGCCATGATTAGTATAGGTGTTCTTAGATTTCTTGTTTGGGCTCATCATGTATTTACTGTGGGCTTTGATGTTGATGCCCGTGCCTACTTCACCGTTGCTACCATGATCATAGCAACCCCCACTAGAATAAAAATCTTTAGTTGGATTGCTACTATGGTGGGCGGGTTTGATATGATACAAAACACCCATGGATTTCGCTATTGGGTGGGTAAAATCTTGGGTCGGACATACCCTGAAACTTTAGGTCAAATCCATTTTTGGAATCACTTTTTTTTTGGGTTAATTCAACCTCCTTCCCATGCATTTCTTTGGGCTTTCGGGGTACACTTCAAAAATGAGATACTGTCCTATAAGAACGTGACAGTCCATAAGCAATGTAATATATATGGGGAAACACCAACGGCACAGCAGGAAAGTTTTCTTCCGCTTGCCGTTTCCAGAAGTAGTTTGATGCCTCTATCCACCGTGGATGGACCAGAAACTTCTCCTCTTTCAAAGCCCAACGTGACTTCTCCGTTCCAGCATCTGTTGAGACCATGTGTGTCACGGATCGGTCGAGTTCAGTTGAGCAAGTGCCCCCCAACTGCTCTACCATCTTCCAGAGATGATGGTTGTCAGCCTGAAATTTGGTAG

Protein sequence

MKCQISIKICSNMQIITRLNEHPKMLCPTYVPKNSCQYLGMVYAMISIGVLRFLVWAHHVFTVGFDVDARAYFTVATMIIATPTRIKIFSWIATMVGGFDMIQNTHGFRYWVGKILGRTYPETLGQIHFWNHFFFGLIQPPSHAFLWAFGVHFKNEILSYKNVTVHKQCNIYGETPTAQQESFLPLAVSRSSLMPLSTVDGPETSPLSKPNVTSPFQHLLRPCVSRIGRVQLSKCPPTALPSSRDDGCQPEIW

Homology

[Close]

BLAST of CcUC08G146180 vs. NCBI nr
Match: PPD89224.1 (hypothetical protein GOBAR_DD13839 [Gossypium barbadense])

HSP 1 Score: 150.2 bits (378), Expect = 2.4e-32
Identity = 82/134 (61.19%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 14  QIITRLNEHPKMLCP-------------TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHV 73
           Q + R   HP++  P             T+  K    YLGMVYAMISIGVL FLVWAHH+
Sbjct: 478 QHLFRFFGHPELYIPILPGSGIISHIVSTFSGKLVFGYLGMVYAMISIGVLGFLVWAHHM 537

Query: 74  FTVGFDVDARAYFTVATMIIATPTRIKIFSWIATMVGGFDMIQNTHGFRYWVGKILGRTY 133
           FTVG D+D RAYFT ATMIIA PT IKIFSWIATM G         GF+YWVGKI GRTY
Sbjct: 538 FTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWG---------GFQYWVGKIFGRTY 597

Query: 134 PETLGQIHFWNHFF 135
           PETLGQIHFW  FF
Sbjct: 598 PETLGQIHFWITFF 602

[Close]

BLAST of CcUC08G146180 vs. NCBI nr
Match: KAG4152000.1 (hypothetical protein ERO13_D04G096416v2 [Gossypium hirsutum])

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-30
Identity = 84/160 (52.50%), Postives = 96/160 (60.00%), Query Frame = 0


Query: 14  QIITRLNEHPKMLCP-------------TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHV 73
           Q + R   HP++  P             T++ K    YLGMVYAMISIGVL FLVWAHH+
Sbjct: 79  QHLFRFFSHPEVYIPILPGSGIISHIVSTFLGKLVFGYLGMVYAMISIGVLGFLVWAHHM 138

Query: 74  FTVGFDVDARAYFTVATMIIATPTRIKIFSWIATMVG-----GFDM-IQNTH-------- 133
           FTVG D+D RAYFT ATMIIA PT IKIFSWIATM G     G D+ + +T+        
Sbjct: 139 FTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMSGVSANSGLDIALHDTYYVVAHFHY 198

Query: 134 ------------GFRYWVGKILGRTYPETLGQIHFWNHFF 135
                       GF YWVGKI G+TYPETLGQIHFW  FF
Sbjct: 199 VLSMGAVFALFAGFHYWVGKIFGQTYPETLGQIHFWITFF 238

[Close]

BLAST of CcUC08G146180 vs. NCBI nr
Match: TYH76828.1 (hypothetical protein ES332_D04G113900v1 [Gossypium tomentosum])

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-30
Identity = 84/160 (52.50%), Postives = 96/160 (60.00%), Query Frame = 0


Query: 14  QIITRLNEHPKMLCP-------------TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHV 73
           Q + R   HP++  P             T++ K    YLGMVYAMISIGVL FLVWAHH+
Sbjct: 235 QHLFRFFSHPEVYIPILPGSGIISHIVLTFLGKLVFGYLGMVYAMISIGVLGFLVWAHHM 294

Query: 74  FTVGFDVDARAYFTVATMIIATPTRIKIFSWIATMVG-----GFDM-IQNTH-------- 133
           FTVG D+D RAYFT ATMIIA PT IKIFSWIATM G     G D+ + +T+        
Sbjct: 295 FTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWGVSANSGLDIALHDTYYVVAHFHY 354

Query: 134 ------------GFRYWVGKILGRTYPETLGQIHFWNHFF 135
                       GF YWVGKI G+TYPETLGQIHFW  FF
Sbjct: 355 VLSMGAVFALFAGFHYWVGKIFGQTYPETLGQIHFWITFF 394

[Close]

BLAST of CcUC08G146180 vs. NCBI nr
Match: TYG73552.1 (hypothetical protein ES288_D04G111000v1 [Gossypium darwinii])

HSP 1 Score: 139.4 bits (350), Expect = 4.2e-29
Identity = 77/138 (55.80%), Postives = 83/138 (60.14%), Query Frame = 0


Query: 38  YLGMVYAMISIGVLRFLVWAHHVFTVGFDVDARAYFTVATMIIATPTRIKIFSWIATMVG 97
           YLGMVYAMISIGVL FLVWAHH+FTVG D+D RAYFT ATMIIA PT IKIFSWIATM G
Sbjct: 205 YLGMVYAMISIGVLGFLVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWG 264

Query: 98  G----------------------------FDMIQNTH-------------GFRYWVGKIL 135
           G                            + ++ + H             GF YWVGKI 
Sbjct: 265 GSIQYKTPMLFAVGIVPANSVLDIALHDTYYVVAHFHYVLSMGAVFSLFAGFHYWVGKIF 324

[Close]

BLAST of CcUC08G146180 vs. NCBI nr
Match: YP_009306142.1 (cytochrome c oxidase subunit 1 [Corchorus olitorius] >AOO95977.1 cytochrome c oxidase subunit 1 [Corchorus olitorius])

HSP 1 Score: 138.7 bits (348), Expect = 7.2e-29
Identity = 80/159 (50.31%), Postives = 88/159 (55.35%), Query Frame = 0


Query: 29  TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHVFTVGFDVDARAYFTVATMIIATPTRIKI 88
           T+  KN   YLGMVYAMISIGVL FLVWAHH+FTVG DVD RAYFT ATMIIA PT IKI
Sbjct: 263 TFSKKNVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKI 322

Query: 89  FSWIATMVGG----------------------------------------FDMIQNTH-- 135
           FSWIATM GG                                        + ++ + H  
Sbjct: 323 FSWIATMWGGAIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGIDIALHDTYYVVAHFHYV 382

[Close]

BLAST of CcUC08G146180 vs. ExPASy Swiss-Prot
Match: P08743 (Cytochrome c oxidase subunit 1 OS=Oenothera berteroana OX=3950 GN=COX1 PE=3 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 4.7e-31
Identity = 81/159 (50.94%), Postives = 88/159 (55.35%), Query Frame = 0


Query: 29  TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHVFTVGFDVDARAYFTVATMIIATPTRIKI 88
           T+  K    YLGMVYAMISIGVL FLVWAHH+FTVG DVD RAYFT ATMIIA PT +KI
Sbjct: 263 TFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGVKI 322

Query: 89  FSWIATMVG--------------------------------GFDM-IQNTH--------- 135
           FSWIATM G                                G D+ + +T+         
Sbjct: 323 FSWIATMWGGSIQYKTPMLFAVGSIFLFTVGGLAGIVPANSGLDIALHDTYYAGAHFHYV 382

[Close]

BLAST of CcUC08G146180 vs. ExPASy Swiss-Prot
Match: P07506 (Cytochrome c oxidase subunit 1 OS=Glycine max OX=3847 GN=COX1 PE=3 SV=3)

HSP 1 Score: 136.3 bits (342), Expect = 4.7e-31
Identity = 80/159 (50.31%), Postives = 86/159 (54.09%), Query Frame = 0


Query: 29  TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHVFTVGFDVDARAYFTVATMIIATPTRIKI 88
           T+  K    YLGMVYAMISIGVL FLVWAHH+FTVG DVD RAYFT ATMIIA PT IKI
Sbjct: 263 TFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKI 322

Query: 89  FSWIATMVGG----------------------------------------FDMIQNTH-- 135
           FSWIATM GG                                        + ++ + H  
Sbjct: 323 FSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYV 382

[Close]

BLAST of CcUC08G146180 vs. ExPASy Swiss-Prot
Match: P68540 (Cytochrome c oxidase subunit 1 OS=Aegilops columnaris OX=4493 GN=COX1 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.9e-31
Identity = 80/159 (50.31%), Postives = 86/159 (54.09%), Query Frame = 0


Query: 29  TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHVFTVGFDVDARAYFTVATMIIATPTRIKI 88
           T+  K    YLGMVYAMISIGVL FLVWAHH+FTVG DVD RAYFT ATMIIA PT IKI
Sbjct: 263 TFSRKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKI 322

Query: 89  FSWIATMVGG----------------------------------------FDMIQNTH-- 135
           FSWIATM GG                                        + ++ + H  
Sbjct: 323 FSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYV 382

[Close]

BLAST of CcUC08G146180 vs. ExPASy Swiss-Prot
Match: P60620 (Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.9e-31
Identity = 80/159 (50.31%), Postives = 86/159 (54.09%), Query Frame = 0


Query: 29  TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHVFTVGFDVDARAYFTVATMIIATPTRIKI 88
           T+  K    YLGMVYAMISIGVL FLVWAHH+FTVG DVD RAYFT ATMIIA PT IKI
Sbjct: 263 TFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKI 322

Query: 89  FSWIATMVGG----------------------------------------FDMIQNTH-- 135
           FSWIATM GG                                        + ++ + H  
Sbjct: 323 FSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYV 382

[Close]

BLAST of CcUC08G146180 vs. ExPASy Swiss-Prot
Match: P24794 (Cytochrome c oxidase subunit 1 OS=Beta vulgaris OX=161934 GN=COX1 PE=3 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 7.9e-31
Identity = 80/159 (50.31%), Postives = 86/159 (54.09%), Query Frame = 0


Query: 29  TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHVFTVGFDVDARAYFTVATMIIATPTRIKI 88
           T+  K    YLGMVYAMISIGVL FLVWAHH+FTVG DVD RAYFT ATMIIA PT IKI
Sbjct: 263 TFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKI 322

Query: 89  FSWIATMVGG----------------------------------------FDMIQNTH-- 135
           FSWIATM GG                                        + ++ + H  
Sbjct: 323 FSWIATMWGGSIQYKTPMLFAVGFIFLFTVGGLTGIVLANSGLDIALHDTYYVVAHFHYV 382

[Close]

BLAST of CcUC08G146180 vs. ExPASy TrEMBL
Match: A0A5D2LCG6 (Cytochrome c oxidase subunit 1 OS=Gossypium tomentosum OX=34277 GN=ES332_D04G113900v1 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.3e-31
Identity = 84/160 (52.50%), Postives = 96/160 (60.00%), Query Frame = 0


Query: 14  QIITRLNEHPKMLCP-------------TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHV 73
           Q + R   HP++  P             T++ K    YLGMVYAMISIGVL FLVWAHH+
Sbjct: 235 QHLFRFFSHPEVYIPILPGSGIISHIVLTFLGKLVFGYLGMVYAMISIGVLGFLVWAHHM 294

Query: 74  FTVGFDVDARAYFTVATMIIATPTRIKIFSWIATMVG-----GFDM-IQNTH-------- 133
           FTVG D+D RAYFT ATMIIA PT IKIFSWIATM G     G D+ + +T+        
Sbjct: 295 FTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWGVSANSGLDIALHDTYYVVAHFHY 354

Query: 134 ------------GFRYWVGKILGRTYPETLGQIHFWNHFF 135
                       GF YWVGKI G+TYPETLGQIHFW  FF
Sbjct: 355 VLSMGAVFALFAGFHYWVGKIFGQTYPETLGQIHFWITFF 394

[Close]

BLAST of CcUC08G146180 vs. ExPASy TrEMBL
Match: A0A5D2CZ29 (Cytochrome c oxidase subunit 1 OS=Gossypium darwinii OX=34276 GN=ES288_D04G111000v1 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.0e-29
Identity = 77/138 (55.80%), Postives = 83/138 (60.14%), Query Frame = 0


Query: 38  YLGMVYAMISIGVLRFLVWAHHVFTVGFDVDARAYFTVATMIIATPTRIKIFSWIATMVG 97
           YLGMVYAMISIGVL FLVWAHH+FTVG D+D RAYFT ATMIIA PT IKIFSWIATM G
Sbjct: 205 YLGMVYAMISIGVLGFLVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWG 264

Query: 98  G----------------------------FDMIQNTH-------------GFRYWVGKIL 135
           G                            + ++ + H             GF YWVGKI 
Sbjct: 265 GSIQYKTPMLFAVGIVPANSVLDIALHDTYYVVAHFHYVLSMGAVFSLFAGFHYWVGKIF 324

[Close]

BLAST of CcUC08G146180 vs. ExPASy TrEMBL
Match: A0A1C9I9V9 (Cytochrome c oxidase subunit 1 OS=Corchorus olitorius OX=93759 GN=cox1 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.5e-29
Identity = 80/159 (50.31%), Postives = 88/159 (55.35%), Query Frame = 0


Query: 29  TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHVFTVGFDVDARAYFTVATMIIATPTRIKI 88
           T+  KN   YLGMVYAMISIGVL FLVWAHH+FTVG DVD RAYFT ATMIIA PT IKI
Sbjct: 263 TFSKKNVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKI 322

Query: 89  FSWIATMVGG----------------------------------------FDMIQNTH-- 135
           FSWIATM GG                                        + ++ + H  
Sbjct: 323 FSWIATMWGGAIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGIDIALHDTYYVVAHFHYV 382

[Close]

BLAST of CcUC08G146180 vs. ExPASy TrEMBL
Match: D7RMW7 (Cytochrome c oxidase subunit 1 OS=Silene noctiflora OX=39899 GN=cox1 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-28
Identity = 81/159 (50.94%), Postives = 87/159 (54.72%), Query Frame = 0


Query: 29  TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHVFTVGFDVDARAYFTVATMIIATPTRIKI 88
           T+  K    YLGMVYAMISIGVL FLVWAHH+FTVG DVD RAYFT ATMIIA PT IKI
Sbjct: 263 TFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKI 322

Query: 89  FSWIATMVGG----------------------------------------FDMIQNTH-- 135
           FSWIATM GG                                        + ++ + H  
Sbjct: 323 FSWIATMWGGSIQYKTPMLFAVGFIFLFTVGGLTGIVLANSGLDIALHDTYYVVAHFHYV 382

[Close]

BLAST of CcUC08G146180 vs. ExPASy TrEMBL
Match: Q94RS3 (Cytochrome c oxidase subunit 1 (Fragment) OS=Lachnocaulon anceps OX=76467 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-28
Identity = 81/159 (50.94%), Postives = 87/159 (54.72%), Query Frame = 0


Query: 29  TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHVFTVGFDVDARAYFTVATMIIATPTRIKI 88
           T+  K    YLGMVYAMISIGVL FLVWAHH+FTVG DVD RAYFT ATMIIA PT IKI
Sbjct: 185 TFSRKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKI 244

Query: 89  FSWIATMVGG----------------------------------------FDMIQNTH-- 135
           FSWIATM GG                                        + ++ + H  
Sbjct: 245 FSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYV 304

[Close]

BLAST of CcUC08G146180 vs. TAIR 10
Match: ATMG01360.1 (cytochrome oxidase )

HSP 1 Score: 135.6 bits (340), Expect = 5.6e-32
Identity = 80/159 (50.31%), Postives = 86/159 (54.09%), Query Frame = 0


Query: 29  TYVPKNSCQYLGMVYAMISIGVLRFLVWAHHVFTVGFDVDARAYFTVATMIIATPTRIKI 88
           T+  K    YLGMVYAMISIGVL FLVWAHH+FTVG DVD RAYFT ATMIIA PT IKI
Sbjct: 263 TFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKI 322

Query: 89  FSWIATMVGG----------------------------------------FDMIQNTH-- 135
           FSWIATM GG                                        + ++ + H  
Sbjct: 323 FSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYV 382

The following BLAST results are available for this feature:

BLAST of CcUC08G146180 vs. NCBI nr


Match Name	E-value	Identity	Description
PPD89224.1	2.4e-32	61.19	hypothetical protein GOBAR_DD13839 [Gossypium barbadense]	[more]
KAG4152000.1	1.0e-30	52.50	hypothetical protein ERO13_D04G096416v2 [Gossypium hirsutum]	[more]
TYH76828.1	1.3e-30	52.50	hypothetical protein ES332_D04G113900v1 [Gossypium tomentosum]	[more]
TYG73552.1	4.2e-29	55.80	hypothetical protein ES288_D04G111000v1 [Gossypium darwinii]	[more]
YP_009306142.1	7.2e-29	50.31	cytochrome c oxidase subunit 1 [Corchorus olitorius] >AOO95977.1 cytochrome c ox...	[more]

BLAST of CcUC08G146180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08743	4.7e-31	50.94	Cytochrome c oxidase subunit 1 OS=Oenothera berteroana OX=3950 GN=COX1 PE=3 SV=2	[more]
P07506	4.7e-31	50.31	Cytochrome c oxidase subunit 1 OS=Glycine max OX=3847 GN=COX1 PE=3 SV=3	[more]
P68540	7.9e-31	50.31	Cytochrome c oxidase subunit 1 OS=Aegilops columnaris OX=4493 GN=COX1 PE=3 SV=1	[more]
P60620	7.9e-31	50.31	Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1	[more]
P24794	7.9e-31	50.31	Cytochrome c oxidase subunit 1 OS=Beta vulgaris OX=161934 GN=COX1 PE=3 SV=2	[more]

BLAST of CcUC08G146180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2LCG6	6.3e-31	52.50	Cytochrome c oxidase subunit 1 OS=Gossypium tomentosum OX=34277 GN=ES332_D04G113...	[more]
A0A5D2CZ29	2.0e-29	55.80	Cytochrome c oxidase subunit 1 OS=Gossypium darwinii OX=34276 GN=ES288_D04G11100...	[more]
A0A1C9I9V9	3.5e-29	50.31	Cytochrome c oxidase subunit 1 OS=Corchorus olitorius OX=93759 GN=cox1 PE=3 SV=1	[more]
D7RMW7	1.0e-28	50.94	Cytochrome c oxidase subunit 1 OS=Silene noctiflora OX=39899 GN=cox1 PE=2 SV=1	[more]
Q94RS3	1.0e-28	50.94	Cytochrome c oxidase subunit 1 (Fragment) OS=Lachnocaulon anceps OX=76467 PE=3 S...	[more]

BLAST of CcUC08G146180 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG01360.1	5.6e-32	50.31	cytochrome oxidase	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000883	Cytochrome c oxidase subunit I	PRINTS	PR01165	CYCOXIDASEI	coord: 49..64 score: 71.09 coord: 73..94 score: 72.35
IPR000883	Cytochrome c oxidase subunit I	PFAM	PF00115	COX1	coord: 26..98 e-value: 3.1E-16 score: 59.3
IPR000883	Cytochrome c oxidase subunit I	PANTHER	PTHR10422	CYTOCHROME C OXIDASE SUBUNIT 1	coord: 25..99 coord: 104..136
IPR036927	Cytochrome c oxidase-like, subunit I superfamily	GENE3D	1.20.210.10		coord: 25..109 e-value: 4.3E-24 score: 86.8
IPR036927	Cytochrome c oxidase-like, subunit I superfamily	SUPERFAMILY	81442	Cytochrome c oxidase subunit I-like	coord: 26..135
None	No IPR available	PANTHER	PTHR10422:SF18	CYTOCHROME C OXIDASE SUBUNIT 1	coord: 25..99 coord: 104..136
IPR023616	Cytochrome c oxidase-like, subunit I domain	PROSITE	PS50855	COX1	coord: 28..136 score: 16.301231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G146180.1	CcUC08G146180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0020037	heme binding