CcUC08G146140 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G146140
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RNA-binding protein 7
Location	CicolChr08: 2038163 .. 2043019 (+)
RNA-Seq Expression	CcUC08G146140
Synteny	CcUC08G146140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGAAGCTCAGATGGATGCACCATTTACGTTGGTATGTTTGTTTTTATCTGTATCCATCTTAATTTATGTTTTCTGTATTCTAATTTGTTGAACTCTTTTGTTCTCCTTTCATGAGGATTCTGTTTGCATTTTAAGCTTCGTGTTTTTACTTCTGTGAAGTTTCGTATGAAAATTGTGCTTTTGGGTGGTTGGTTTTATATTAGTTGTGTTTATTTCTTTCTATTATGTTTTACTATTGGACCTATATGAACATATTTATTTGTTCCCTCACAAAGCTATGCTTAGATTTTTTGTTGGCTGGTTTCATAATTGAACAAAAAGGATTGGGTTATTTGCCGGATTTCTTACTCTCCAACTTTTTCCTCTCTTGCAAATATGTTTGATTTCTCTTTATAACATAATTGTTTGCTGCCTTTGGTGAAGAGGATTGAAAGTTAACTTATTTTCTTTTGATTTATTTTCTTTTGATTTTCATAGATCTCCTATATTTTCTTCGTTTTTGCTTTAACTGGCACATCTAAATTTTCACTTTCACCATTGTCTTCAATCTGCTTCTTTGTGGGCTTTACCCCATTTGAATACTGCTGCCCGTTTCTCTGTAATATTTCCTTAACATAACTGGTTGTTCAGTGAACTTACTTTTTTGGGGAATTTTTCTCCCCCTTTTATATTTTTATACAATAGTATCTATTAAATTCTAAGGATGCAGCCTACTTGAATTTAGATACCACATTTTCTTCTGAATTTAATTTTGTTACTTCACTTTTTGTAGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAAGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAACCGTACCTTGAAGTTTGCAGTATGTCATTTTTATTTCTTTCTCAACGAAAAATTTTCATTTTATCTCTGTTTTTCTTGATGAACTCTGTTTTCTAACTTATACACTTGCTTTATGATTCAGTATTCATGTCATAACCATCTCCTCTAATTTGACCCATTTTGATCAGTAACTCACGTTAGATATATATAGAGTCTATTAACTTGTGCGGTGCATCTGAAATTTTAGACCTTTTGTTTTATTATCGTATAATTTAATGAACTTAATTAAAAGTCGATGATTAAAATTTCTCAGAAGAATAGCTTATGATTTGATTTTATACTAAAGTTTATATGTACTACTACTAAATATATATTAACTAATGAAGTAATCTTTGTGATCATTTAGAATAGTCCAAAAATTGTCCTTCATATGCCTTATGCAGTATATTGCATATCTTTTTTGAAGTTTTAGAAATTAGATTTCATTCCAATTATATCACCTTTTCTTGTTATCACCAATTATATTACATTCCAAATATATTCATGGCTCACGATAAATTTAATCTAGTTTGGTGTATATCACCAGAATTACAAATGACTTGGTTAGAAAGCTTTTGGCTCTCCAATTTTAGACGATGAACATGAGGATTAGTACATTATTGAAAAACAGAAAGAAATGGAAAATATAATTTATTCACACTACTTCAGTACTCTAATGGCTTCATTGAAGAACAGAAAAAATTATCGGAGTTGGGAGAATGAATGTAGATGCTTAAACATGATTAGAAAATCGAAACAAGTCTAAATATGTAATTTCATCTTTTTTTAAAAAAATGATATCTATTAGTTTTCTAAAAAAGTGATGTCTTTTCTGGTTTTGTAAATAAATAAGAACAATATCAACAATGAAAAGTAAAACAGATACAAAGATTCCTTTTCCAGTTATAGATGGTTTCCTGATATATTATTGTTTACTGGCAGTCATACATTCCAATTTTATGATCTTTTTCTTTTGGGGAAAAAAAACAAGATTGTGGAATCTCCTTGTATCAGCCCTGATTGTGTGGTGAGCTATTTTGTTATGGGAATGTTAAGGCCCCTAGTTATGGAATTAATAGGAGTATTGGTAGAATATTAGTATGGTTATTAGTTGGGGCATATTCGTAAGTTGGTTAGGTCTTTTTGCTATAAATAGGAGAGTGGTTGGAGAAAGGTTTGAAGAATTTTAGGGATATTTGTACGGATGGCCCGCCTCGAAATTTGGCCTCAAATTAAAAAACACTTGAAATTTGGCTTTCTGCTGATGTCATTACTGTGCGAAATAACCACTTTAACCCTTCTTCCTTCTCTTCTTCCGCCATTTCTCTCCCGCTGTTTTTTTTTTCTTTTTCATTCATCGTTTTTTCTTCTTTTCTTCGTCGTCCTTCTTCAGGCATCTTCTTCGTCTTTTTTCATGCGTCTTTCCAGCGAGACGTTTTTGGGAGATGTTGCTCTATTCATTTTATTTAATTTATTTTTTCCATTTTCAATGGTACCAGCGAGACTTTCGTAATCAAAATGAGAAGAAGAAAACGATGCTGATCAAAAAGAGCGAGAGCAGCGAGATTGACGAGAGCGAGAGCGAGAGCGACTCATTCTCGTTCTCGTTCTCGTTCAACGTCAGAAGCACGATTTCGTTATCGCCAGCCTGCTACTGCTACTAATTAATGATCCTGTACGAATTTTCCATAAAATGCAAACAATTCTGACATTAAATTCAAAACAAGTTAAGAAGGATTGAATAAATGAATGTGTATATAAAAAGAGATCAACGTGAGTGAGAACGAGATCAGCGAAAGCGAGAACGAGATCAGCGAAATCAAGATTGATGAGAGCGAGAGCGAGTTGGATTAGTCATTTAAGAGTGATTGTGAGATCATTAGTCTCGCTTCCCATTCGCATGTCTACAAATACATCTCAATGGTCGTTCTTGGTCTCGTTCCACACTAGACGCACATTCTTGTTTAAAAATAAGTAAAATGTTTTTCCAAACGTCGCTCTTTCGAGTTCTCTTGCTTCCAAATCTCTCTCTTGTTTCTTCTTCTTCTGTCTGTGTGTTCTTGCTTTTCCCATATTCTCGCTCTCGTTGCTTCTTGTTGCTTCCCCCGAAATCTCTCTCGTTTCTTCTTGCTTCCCCGAATTCTCTCTCATTCTAAATCTCTCTCTCGTTTCACTATTGGTCTCACGCTGGGTGGTGGTGGTCTTAGGCTTGATGGTGATGGTGGTGGTGGTGGTCTCAGGCTTGTTGCTTTCCCCGAAATCTCTCTTTCGTTTCACTATTGGTCTCAGGCTTGGTGGTGGTGGTGGTGGTCTCAAGCTGGGTGGGGGAAGCAAGAAGAAACGAGAGAGAGATTTTGGGGGAAGCAACGAGAAGCAAAGAGAGCGAGAATATGGGAAAAGCAAGAACACATGGAAGAAGGAATGAGAGAGAGATTTGGGGGGAAGCAAGAGAATTTGAAAGATGGACGTTTGGAAAAACATTTGAGACTAATTTTTAAACAATAACATGCGTCTAGTGGAACGAAACCGAAAATGACCAGCAAGATGTATTTGTAGACACGCAAATGGGAAGCGAGACTAATGATCTCATAATCACTCTTAAATGACTAATCCAACTCGCTCTTGCTCTCATCAATTTCACTCTCGTTCACGCTGATCTCTTTTTAGATGCACATTCATTCATTCAATCCTTCTTAACTTGTTTTGAATTTAATGTCAGAATTGTTTGCATTTTATGTGAAATTTGTATAGGATCATTAATTAGCAGCAGCAGGCTGGCGGGAACAAAAATGTGCTCCTGACGTTGAACGAGAACGAGTAGCGTCTGGTGTGGAACGAGAACGCCTCGCTCTCGCTCTCGTCAATCTCGCTCTTTCTGATCAGCGTCGTTTTCTTCTTCTCATTCTGATTACGAATGTCTCGCTGGTACCGTTTAATATGAAAAAAAAAATTGAGCGACATCTCCGGAAATCGTCTCGCTGGGAAGACACATGAAAAAAGACGGAAGATGCTTGAAGAAGGACGACGAAGAAAAGCAGAAAAAACGATGAACGAAAAAAAACAACGGGAGTGAAATGGCGGAAAAAGGGTTAAAGTGGTAATTTCGCAGAGTGGTGACATCAGCAGAAGGCCAAATTTCGAGTGTTTTTGAATTTGAGGCCAAATTTCAAGTGGACCTCTCAAAATGAGCCATCCATACAAATATCCCAGAATTTTACGTGGGATTTCCTAATTGGGAATTTGGGAGAGGATTCTCAGCCCTCTAGAATGTGCTGAGGTATATTGTAATTTCTTCATTGATATTGCAATATAATTCTATCTTTTAGTTTTCTTGTTTGTTCTTGAGTTCACTTGTTAGGAGCACAGAATGACACATTGTTTTTGACTTTGTGCAAACAGGTGTCTGGGCAAGACAAGCCTTCAGCAGTTAGCTATGCAATCACTTCATCATCAAATATATCTAATAAATCGAGGTTGCAGATTGTTCCGGGTTGCTCTAATGAAATATCTCAGTATTCCAATCGCTTTTCCACATCATGTAAATTTACAACATATTCTGAGAACCATCTAGAAGGTGATTTTTCTTTATTTTTGTCTTTGCTTTGTTAGTTTGCTAAGAAATTGTGTATTTTTACTTTATTGGCCTTTCCCACGTAGTTCAACAAACTTTTGTTTCTTTTATTCAGCGCTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGCCAGAGGTATTCTGGGACAACTTTGGGTAGCCTTAGCCAACCTAAATCACGCCGGCATGATACGAGTTTTCCAGTAGATTATCCTCCTTACGACCTTTTGAACTAA

mRNA sequence

ATGTCAGGAAGCTCAGATGGATGCACCATTTACGTTGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAAGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAACCGTACCTTGAAGTTTGCAGTGTCTGGGCAAGACAAGCCTTCAGCAGTTAGCTATGCAATCACTTCATCATCAAATATATCTAATAAATCGAGGTTGCAGATTGTTCCGGGTTGCTCTAATGAAATATCTCAGTATTCCAATCGCTTTTCCACATCATGTAAATTTACAACATATTCTGAGAACCATCTAGAAGGTGATTTTTCTTTATTTTTGTCTTTGCTTTCGCTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGCCAGAGGTATTCTGGGACAACTTTGGGTAGCCTTAGCCAACCTAAATCACGCCGGCATGATACGAGTTTTCCAGTAGATTATCCTCCTTACGACCTTTTGAACTAA

Coding sequence (CDS)

ATGTCAGGAAGCTCAGATGGATGCACCATTTACGTTGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAAGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAACCGTACCTTGAAGTTTGCAGTGTCTGGGCAAGACAAGCCTTCAGCAGTTAGCTATGCAATCACTTCATCATCAAATATATCTAATAAATCGAGGTTGCAGATTGTTCCGGGTTGCTCTAATGAAATATCTCAGTATTCCAATCGCTTTTCCACATCATGTAAATTTACAACATATTCTGAGAACCATCTAGAAGGTGATTTTTCTTTATTTTTGTCTTTGCTTTCGCTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGCCAGAGGTATTCTGGGACAACTTTGGGTAGCCTTAGCCAACCTAAATCACGCCGGCATGATACGAGTTTTCCAGTAGATTATCCTCCTTACGACCTTTTGAACTAA

Protein sequence

MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSRLQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEGDFSLFLSLLSLLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN

Homology

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BLAST of CcUC08G146140 vs. NCBI nr
Match: XP_038890192.1 (RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890194.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida])

HSP 1 Score: 334.0 bits (855), Expect = 9.7e-88
Identity = 175/203 (86.21%), Postives = 180/203 (88.67%), Query Frame = 0


Query: 1   MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S+GCTIYVGN DERVS+RVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSRLQIVPGCSNEIS 120
           IANYAVKLFSGLVNLHNRTLKFAVSGQDKPS  S AITSSS ISNKSR QI  G SNEIS
Sbjct: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSNAITSSS-ISNKSRSQIFSGYSNEIS 120

Query: 121 QYSNRFSTSCKFTTYSENHLEGDFSLFLSLLSLLYPGLVNQYNGYGSHLDNYNKEYSQRY 180
           QYSNRFSTSC+FTTY ENHLE          +LLYPGLVNQYNGYGSHLDNYNKEYSQRY
Sbjct: 121 QYSNRFSTSCRFTTYPENHLE----------ALLYPGLVNQYNGYGSHLDNYNKEYSQRY 180

Query: 181 SGTTLGSLSQPKSRRHDTSFPVD 204
           SGTTL SL+QPKSRR DTSFPVD
Sbjct: 181 SGTTLDSLNQPKSRRRDTSFPVD 192

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BLAST of CcUC08G146140 vs. NCBI nr
Match: XP_008459559.1 (PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo])

HSP 1 Score: 328.2 bits (840), Expect = 5.3e-86
Identity = 171/207 (82.61%), Postives = 177/207 (85.51%), Query Frame = 0


Query: 1   MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S GCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSRLQIVPGCSNEIS 120
           IANYAVKLFSGLVNLH RTLKFAVSGQDKPS VS AITSS      SR QIV G SNEIS
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSS------SRSQIVSGYSNEIS 120

Query: 121 QYSNRFSTSCKFTTYSENHLEGDFSLFLSLLSLLYPGLVNQYNGYGSHLDNYNKEYSQRY 180
           QYSNRFS+SC+F TY ENHLE          +LL PGLVNQ+NGYGSHLDNYNKEYSQRY
Sbjct: 121 QYSNRFSSSCRFPTYPENHLE----------ALLNPGLVNQFNGYGSHLDNYNKEYSQRY 180

Query: 181 SGTTLGSLSQPKSRRHDTSFPVDYPPY 208
           SGT L S +QPKSRRHD+SFPVDYPPY
Sbjct: 181 SGTNLDSFNQPKSRRHDSSFPVDYPPY 191

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BLAST of CcUC08G146140 vs. NCBI nr
Match: XP_023523852.1 (RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319.7 bits (818), Expect = 1.9e-83
Identity = 161/211 (76.30%), Postives = 177/211 (83.89%), Query Frame = 0


Query: 1   MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSRLQIVPGCSNEIS 120
           I NYAVKLFSGLV LHNRTLKFAVSGQDKPS  S AITSSSNIS+KSR QIVPG SNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QYSNRFSTSCKFTTYSENHLEGDFSLFLSLLSLLYPGLVNQYNGYGSHLDNYNKEYSQRY 180
            YSNR S SC+F+ Y ENHLE             YPGLVNQ NGYGS+ D++N +YSQRY
Sbjct: 121 SYSNRLSNSCRFSAYRENHLEAP----------PYPGLVNQSNGYGSNSDHHNNQYSQRY 180

Query: 181 SGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 212
           SGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 181 SGTNLDSFNHPKSRRHDTSYPVHYPPYELLN 201

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BLAST of CcUC08G146140 vs. NCBI nr
Match: XP_022973396.1 (RNA-binding protein 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 318.9 bits (816), Expect = 3.2e-83
Identity = 161/211 (76.30%), Postives = 177/211 (83.89%), Query Frame = 0


Query: 1   MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSRLQIVPGCSNEIS 120
           I NYAVKLFSGLV LHNRTLKFAVSGQDKPS  S AITSSSNIS+KSR QIVPG SNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QYSNRFSTSCKFTTYSENHLEGDFSLFLSLLSLLYPGLVNQYNGYGSHLDNYNKEYSQRY 180
            YSNR S SC+F+ Y ENHLE             YPGLVNQ NGYGS+ D++N +YSQRY
Sbjct: 121 SYSNRLSNSCRFSAYPENHLEAP----------PYPGLVNQSNGYGSNSDHHNNQYSQRY 180

Query: 181 SGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 212
           SGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 181 SGTNLDSFNHPKSRRHDTSYPVYYPPYELLN 201

[Close]

BLAST of CcUC08G146140 vs. NCBI nr
Match: XP_022932504.1 (RNA-binding protein 7 isoform X1 [Cucurbita moschata])

HSP 1 Score: 317.8 bits (813), Expect = 7.2e-83
Identity = 160/211 (75.83%), Postives = 177/211 (83.89%), Query Frame = 0


Query: 1   MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSRLQIVPGCSNEIS 120
           I NYAVKLFSGLV LHNRTLKFAVSGQDKPS  S AITSSSNIS+KSR QIVPG SNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QYSNRFSTSCKFTTYSENHLEGDFSLFLSLLSLLYPGLVNQYNGYGSHLDNYNKEYSQRY 180
            YSNR S SC+F+ Y ENH+E             YPGLVNQ NGYGS+ D++N +YSQRY
Sbjct: 121 SYSNRLSNSCRFSAYPENHVEAP----------PYPGLVNQSNGYGSNSDHHNNQYSQRY 180

Query: 181 SGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 212
           SGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 181 SGTNLDSFNHPKSRRHDTSYPVYYPPYELLN 201

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BLAST of CcUC08G146140 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-12
Identity = 31/81 (38.27%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S  +   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHNRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of CcUC08G146140 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-12
Identity = 31/81 (38.27%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S  +   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHNRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of CcUC08G146140 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-12
Identity = 31/81 (38.27%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S  +   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHNRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of CcUC08G146140 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 5.3e-12
Identity = 30/73 (41.10%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 9  TIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKL 68
          TIYVG LDE+VS+ +L+++++QAG VV +++P+D+ +   +GF F E+  EE A+YA+K+
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73

Query: 69 FSGLVNLHNRTLK 82
           + ++ L+ + +K
Sbjct: 74 LN-MIKLYGKPIK 85

[Close]

BLAST of CcUC08G146140 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-11
Identity = 32/81 (39.51%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 9  TIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKL 68
          TIY+GNLDE+V+D +L+++ +QAG VV++HIPRD+      GF F E+  E+   YA ++
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71

Query: 69 FSGLVNLHNRTLKFAVSGQDK 90
           +  V L  + ++   + QD+
Sbjct: 72 LN-QVKLFGKPIRVNRASQDR 91

[Close]

BLAST of CcUC08G146140 vs. ExPASy TrEMBL
Match: A0A1S3CAZ4 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.6e-86
Identity = 171/207 (82.61%), Postives = 177/207 (85.51%), Query Frame = 0


Query: 1   MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S GCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSRLQIVPGCSNEIS 120
           IANYAVKLFSGLVNLH RTLKFAVSGQDKPS VS AITSS      SR QIV G SNEIS
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSS------SRSQIVSGYSNEIS 120

Query: 121 QYSNRFSTSCKFTTYSENHLEGDFSLFLSLLSLLYPGLVNQYNGYGSHLDNYNKEYSQRY 180
           QYSNRFS+SC+F TY ENHLE          +LL PGLVNQ+NGYGSHLDNYNKEYSQRY
Sbjct: 121 QYSNRFSSSCRFPTYPENHLE----------ALLNPGLVNQFNGYGSHLDNYNKEYSQRY 180

Query: 181 SGTTLGSLSQPKSRRHDTSFPVDYPPY 208
           SGT L S +QPKSRRHD+SFPVDYPPY
Sbjct: 181 SGTNLDSFNQPKSRRHDSSFPVDYPPY 191

[Close]

BLAST of CcUC08G146140 vs. ExPASy TrEMBL
Match: A0A6J1I8J0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471946 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.6e-83
Identity = 161/211 (76.30%), Postives = 177/211 (83.89%), Query Frame = 0


Query: 1   MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSRLQIVPGCSNEIS 120
           I NYAVKLFSGLV LHNRTLKFAVSGQDKPS  S AITSSSNIS+KSR QIVPG SNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QYSNRFSTSCKFTTYSENHLEGDFSLFLSLLSLLYPGLVNQYNGYGSHLDNYNKEYSQRY 180
            YSNR S SC+F+ Y ENHLE             YPGLVNQ NGYGS+ D++N +YSQRY
Sbjct: 121 SYSNRLSNSCRFSAYPENHLEAP----------PYPGLVNQSNGYGSNSDHHNNQYSQRY 180

Query: 181 SGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 212
           SGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 181 SGTNLDSFNHPKSRRHDTSYPVYYPPYELLN 201

[Close]

BLAST of CcUC08G146140 vs. ExPASy TrEMBL
Match: A0A6J1EX61 (RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.5e-83
Identity = 160/211 (75.83%), Postives = 177/211 (83.89%), Query Frame = 0


Query: 1   MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSRLQIVPGCSNEIS 120
           I NYAVKLFSGLV LHNRTLKFAVSGQDKPS  S AITSSSNIS+KSR QIVPG SNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QYSNRFSTSCKFTTYSENHLEGDFSLFLSLLSLLYPGLVNQYNGYGSHLDNYNKEYSQRY 180
            YSNR S SC+F+ Y ENH+E             YPGLVNQ NGYGS+ D++N +YSQRY
Sbjct: 121 SYSNRLSNSCRFSAYPENHVEAP----------PYPGLVNQSNGYGSNSDHHNNQYSQRY 180

Query: 181 SGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 212
           SGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 181 SGTNLDSFNHPKSRRHDTSYPVYYPPYELLN 201

[Close]

BLAST of CcUC08G146140 vs. ExPASy TrEMBL
Match: A0A5A7T7S6 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00940 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.7e-80
Identity = 160/195 (82.05%), Postives = 167/195 (85.64%), Query Frame = 0


Query: 13  GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 72
           GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL
Sbjct: 103 GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 162

Query: 73  VNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSRLQIVPGCSNEISQYSNRFSTSCKF 132
           VNLH RTLKFAVSGQDKPS VS AITSS      SR QIV G SNEISQY+NRFS+SC+F
Sbjct: 163 VNLHKRTLKFAVSGQDKPSPVSNAITSS------SRSQIVSGYSNEISQYTNRFSSSCRF 222

Query: 133 TTYSENHLEGDFSLFLSLLSLLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPK 192
            TY ENHLE          +LL PGLVNQ+NGYGSHLDNYNKEYSQRYSGT L S +QPK
Sbjct: 223 PTYPENHLE----------ALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPK 281

Query: 193 SRRHDTSFPVDYPPY 208
           SRRHD+SFPVDYPPY
Sbjct: 283 SRRHDSSFPVDYPPY 281

[Close]

BLAST of CcUC08G146140 vs. ExPASy TrEMBL
Match: A0A6J1CKW6 (RNA-binding protein 7 OS=Momordica charantia OX=3673 GN=LOC111012090 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 8.0e-80
Identity = 157/211 (74.41%), Postives = 172/211 (81.52%), Query Frame = 0


Query: 1   MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S+ CT+YVGNLD+RVSDRVLYDILIQAGR+VDLHIPRDKESGKPKG+AFAEYESEE
Sbjct: 1   MSGRSNCCTVYVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSRLQIVPGCSNEIS 120
           IANYAVKLFSGLV LHNR LKFAVSGQDKPS  S AI SSSNIS+K R Q VPG S+EIS
Sbjct: 61  IANYAVKLFSGLVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEIS 120

Query: 121 QYSNRFSTSCKFTTYSENHLEGDFSLFLSLLSLLYPGLVNQYNGYGSHLDNYNKEYSQRY 180
           QYSNR STSC+F+ Y ENHLE            LYPGLVNQ NGYGSH+ NYN EYSQRY
Sbjct: 121 QYSNRLSTSCRFSAYPENHLEAP----------LYPGLVNQSNGYGSHMGNYNNEYSQRY 180

Query: 181 SGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 212
            GTTL S +  + RR++TS PV YPPY+ LN
Sbjct: 181 CGTTLDSFNHSRPRRYETSNPVYYPPYEFLN 201

[Close]

BLAST of CcUC08G146140 vs. TAIR 10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-38
Identity = 97/196 (49.49%), Postives = 130/196 (66.33%), Query Frame = 0


Query: 1   MSGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG+S+ CT+Y+GN+DERVSDRVLYDI+IQAGRV+DLHIPRDKE+ KPKGFAFAEYE+EE
Sbjct: 1   MSGTSN-CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSRLQIVPGCSNEIS 120
           IA+YAVKLFSGLV+L+NRTLKFA+SGQDK        ++S+N  +++R Q +    ++ +
Sbjct: 61  IADYAVKLFSGLVSLYNRTLKFAISGQDKLQ------SNSANSGHRARPQSLAFEHSDRA 120

Query: 121 QYSNRFSTSCKFTTYSENHLEGDFSLFLSLLSLLYPGLVNQYNGYGSHLDNYNKEYSQRY 180
            Y               +HLE   S  +S  S L P    Q        +  + EYS+R 
Sbjct: 121 AY---------------HHLERFSSQLISPPSPL-PLDYTQEPPPPGVSNGASLEYSRRV 173

Query: 181 SGTTLGSLSQPKSRRH 197
            G+ L S++  + RR+
Sbjct: 181 LGSALDSINHSRPRRY 173

[Close]

BLAST of CcUC08G146140 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 74.7 bits (182), Expect = 9.9e-14
Identity = 31/83 (37.35%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 9   TIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKL 68
           T+YVG LD ++S+ +L+++ +QAG VV++++P+D+ +   + + F EY SEE A+YA+K+
Sbjct: 26  TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85

Query: 69  FSGLVNLHNRTLKFAVSGQDKPS 92
            + ++ LH + ++   + QDK S
Sbjct: 86  LN-MIKLHGKPIRVNKASQDKKS 107

[Close]

BLAST of CcUC08G146140 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 2   SGSSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEI 61
           SG+  G  +YVGNL   V D  L  +  + G+VV+  +  D++SG+ KGF F  Y+S + 
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257

Query: 62  ANYAVKLFSG 72
              A+K   G
Sbjct: 258 VQNAIKSLDG 267

[Close]

BLAST of CcUC08G146140 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 52.8 bits (125), Expect = 4.0e-07
Identity = 33/105 (31.43%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 5   SDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANY 64
           SD  ++ V N+  R +   LY +  + G+VVD+ IPRD+ +G  +GFAF  Y+ ++ A+ 
Sbjct: 13  SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72

Query: 65  AVKLFSG-LVNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSR 109
           AV+   G +V+    T++FA  G +        +      S +SR
Sbjct: 73  AVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSR 117

[Close]

BLAST of CcUC08G146140 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 52.8 bits (125), Expect = 4.0e-07
Identity = 33/105 (31.43%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 5   SDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANY 64
           SD  ++ V N+  R +   LY +  + G+VVD+ IPRD+ +G  +GFAF  Y+ ++ A+ 
Sbjct: 13  SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72

Query: 65  AVKLFSG-LVNLHNRTLKFAVSGQDKPSAVSYAITSSSNISNKSR 109
           AV+   G +V+    T++FA  G +        +      S +SR
Sbjct: 73  AVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSR 117

The following BLAST results are available for this feature:

BLAST of CcUC08G146140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890192.1	9.7e-88	86.21	RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-bi...	[more]
XP_008459559.1	5.3e-86	82.61	PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 ...	[more]
XP_023523852.1	1.9e-83	76.30	RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022973396.1	3.2e-83	76.30	RNA-binding protein 7-like isoform X1 [Cucurbita maxima]	[more]
XP_022932504.1	7.2e-83	75.83	RNA-binding protein 7 isoform X1 [Cucurbita moschata]	[more]

BLAST of CcUC08G146140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15427	1.4e-12	38.27	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
Q8QZY9	1.4e-12	38.27	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
Q6AYL5	1.4e-12	38.27	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
Q09442	5.3e-12	41.10	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
O14102	2.6e-11	39.51	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of CcUC08G146140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAZ4	2.6e-86	82.61	RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE...	[more]
A0A6J1I8J0	1.6e-83	76.30	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147194...	[more]
A0A6J1EX61	3.5e-83	75.83	RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 P...	[more]
A0A5A7T7S6	4.7e-80	82.05	RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1CKW6	8.0e-80	74.41	RNA-binding protein 7 OS=Momordica charantia OX=3673 GN=LOC111012090 PE=4 SV=1	[more]

BLAST of CcUC08G146140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10110.1	1.5e-38	49.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	9.9e-14	37.35	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	2.1e-08	37.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G64200.1	4.0e-07	31.43	ortholog of human splicing factor SC35	[more]
AT5G64200.2	4.0e-07	31.43	ortholog of human splicing factor SC35	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..83 e-value: 1.3E-17 score: 74.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..81 e-value: 2.6E-14 score: 52.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..98 score: 15.408587
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..95 e-value: 2.8E-19 score: 71.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..211
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 1..207
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 1..207
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G146140.1	CcUC08G146140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding